RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 TCERG1O14776 1098 aaKnown RBP19.25■□□□□ 0.67
TCOF1-201ENST00000323668 HSP90AA1P07900 732 aaKnown RBP19.25■□□□□ 0.67
TCOF1-201ENST00000323668 RGS3P49796 1198 aa19.25■□□□□ 0.67
TCOF1-201ENST00000323668 BECN1Q14457 450 aa19.25■□□□□ 0.67
TCOF1-201ENST00000323668 CCDC7Q96M83 1385 aa19.23■□□□□ 0.67
TCOF1-201ENST00000323668 WDR97A6NE52 1622 aa19.23■□□□□ 0.67
TCOF1-201ENST00000323668 NLRP13Q86W25 1043 aa19.23■□□□□ 0.67
TCOF1-201ENST00000323668 CARMIL2Q6F5E8 1435 aa19.23■□□□□ 0.67
TCOF1-201ENST00000323668 IPO9Q96P70 1041 aaKnown RBP19.22■□□□□ 0.67
TCOF1-201ENST00000323668 NCOA2Q15596 1464 aa19.22■□□□□ 0.67
TCOF1-201ENST00000323668 NPM1P06748 294 aaKnown RBP eCLIP19.22■□□□□ 0.67
TCOF1-201ENST00000323668 BICRAQ9NZM4 1560 aa19.22■□□□□ 0.67
TCOF1-201ENST00000323668 GAPVD1Q14C86 1478 aa19.21■□□□□ 0.67
TCOF1-201ENST00000323668 PEG3Q9GZU2 1588 aa19.2■□□□□ 0.66
TCOF1-201ENST00000323668 ST20-MTHFSA0A0A6YYL1 179 aa19.2■□□□□ 0.66
TCOF1-201ENST00000323668 PDE3BQ13370 1112 aa19.2■□□□□ 0.66
TCOF1-201ENST00000323668 HMGXB3Q12766 1538 aa19.2■□□□□ 0.66
TCOF1-201ENST00000323668 CNTLNQ9NXG0 1405 aa19.19■□□□□ 0.66
TCOF1-201ENST00000323668 KIF7Q2M1P5 1343 aa19.19■□□□□ 0.66
TCOF1-201ENST00000323668 USP47Q96K76 1375 aa19.19■□□□□ 0.66
TCOF1-201ENST00000323668 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.18■□□□□ 0.66
TCOF1-201ENST00000323668 HFM1A2PYH4 1435 aa19.18■□□□□ 0.66
TCOF1-201ENST00000323668 KIF15Q9NS87 1388 aa19.18■□□□□ 0.66
TCOF1-201ENST00000323668 NEUROD2Q15784 382 aa19.17■□□□□ 0.66
TCOF1-201ENST00000323668 CFAP53Q96M91 514 aa19.17■□□□□ 0.66
TCOF1-201ENST00000323668 SLC24A1O60721 1099 aa19.16■□□□□ 0.66
TCOF1-201ENST00000323668 MYBBP1AQ9BQG0 1328 aaKnown RBP19.16■□□□□ 0.66
TCOF1-201ENST00000323668 ERCC6Q03468 1493 aa19.16■□□□□ 0.66
TCOF1-201ENST00000323668 STAG3Q9UJ98 1225 aa19.15■□□□□ 0.66
TCOF1-201ENST00000323668 ARXQ96QS3 562 aa19.14■□□□□ 0.66
TCOF1-201ENST00000323668 HNRNPMP52272 730 aaKnown RBP eCLIP19.14■□□□□ 0.65
TCOF1-201ENST00000323668 EFCAB5A4FU69 1503 aa19.13■□□□□ 0.65
TCOF1-201ENST00000323668 ZNF644Q9H582 1327 aaPredicted RBP19.13■□□□□ 0.65
TCOF1-201ENST00000323668 ANP32BQ92688 251 aaKnown RBP19.12■□□□□ 0.65
TCOF1-201ENST00000323668 FRAT1Q92837 279 aaPredicted RBP19.12■□□□□ 0.65
TCOF1-201ENST00000323668 MAP3K1Q13233 1512 aa19.12■□□□□ 0.65
TCOF1-201ENST00000323668 JPH4Q96JJ6 628 aa19.1■□□□□ 0.65
TCOF1-201ENST00000323668 RSPH4AQ5TD94 716 aa19.1■□□□□ 0.65
TCOF1-201ENST00000323668 RTN4Q9NQC3 1192 aaKnown RBP19.08■□□□□ 0.65
TCOF1-201ENST00000323668 TNNT2P45379 298 aaPredicted RBP19.07■□□□□ 0.64
TCOF1-201ENST00000323668 ARID4BQ4LE39 1312 aaPredicted RBP19.07■□□□□ 0.64
TCOF1-201ENST00000323668 RRP1P56182 461 aaKnown RBP19.07■□□□□ 0.64
TCOF1-201ENST00000323668 FTSJ3Q8IY81 847 aaKnown RBP19.07■□□□□ 0.64
TCOF1-201ENST00000323668 EXOC6Q8TAG9 804 aa19.06■□□□□ 0.64
TCOF1-201ENST00000323668 NAIPQ13075 1403 aa19.05■□□□□ 0.64
TCOF1-201ENST00000323668 NBPF8Q3BBV2 869 aa19.04■□□□□ 0.64
TCOF1-201ENST00000323668 GOLGA2Q08379 1002 aa19.03■□□□□ 0.64
TCOF1-201ENST00000323668 PDE4AP27815 886 aa19.03■□□□□ 0.64
TCOF1-201ENST00000323668 CCDC184Q52MB2 194 aa19.03■□□□□ 0.64
TCOF1-201ENST00000323668 POLA1P09884 1462 aaPredicted RBP19.02■□□□□ 0.64
TCOF1-201ENST00000323668 PANK3Q9H999 370 aa19.02■□□□□ 0.64
TCOF1-201ENST00000323668 BIVM-ERCC5R4GMW8 1640 aa19.01■□□□□ 0.63
TCOF1-201ENST00000323668 CCDC144AA2RUR9 1427 aa19■□□□□ 0.63
TCOF1-201ENST00000323668 TOPBP1Q92547 1522 aa19■□□□□ 0.63
TCOF1-201ENST00000323668 KANK1Q14678 1352 aa19■□□□□ 0.63
TCOF1-201ENST00000323668 EFCAB2Q5VUJ9 269 aa19■□□□□ 0.63
TCOF1-201ENST00000323668 SENP3Q9H4L4 574 aaPredicted RBP19■□□□□ 0.63
TCOF1-201ENST00000323668 MYH16Q9H6N6 1097 aa19■□□□□ 0.63
TCOF1-201ENST00000323668 MORC1Q86VD1 984 aa18.99■□□□□ 0.63
TCOF1-201ENST00000323668 MIA2Q96PC5 1412 aa18.99■□□□□ 0.63
TCOF1-201ENST00000323668 EHBP1L1Q8N3D4 1523 aa18.98■□□□□ 0.63
TCOF1-201ENST00000323668 PCF11O94913 1555 aaKnown RBP18.98■□□□□ 0.63
TCOF1-201ENST00000323668 PLIN1O60240 522 aa18.98■□□□□ 0.63
TCOF1-201ENST00000323668 MS4A1P11836 297 aa18.97■□□□□ 0.63
TCOF1-201ENST00000323668 ESF1Q9H501 851 aaKnown RBP18.97■□□□□ 0.63
TCOF1-201ENST00000323668 AQRO60306 1485 aaKnown RBP eCLIP18.97■□□□□ 0.635e-7■■■■■ 40.3
TCOF1-201ENST00000323668 MAPK8IP3Q9UPT6 1336 aa18.97■□□□□ 0.63
TCOF1-201ENST00000323668 MAPKBP1O60336 1514 aa18.95■□□□□ 0.62
TCOF1-201ENST00000323668 ANKRD50Q9ULJ7 1429 aa18.94■□□□□ 0.62
TCOF1-201ENST00000323668 UNC13AQ9UPW8 1703 aa18.94■□□□□ 0.62
TCOF1-201ENST00000323668 USP35Q9P2H5 1018 aa18.94■□□□□ 0.62
TCOF1-201ENST00000323668 NESP48681 1621 aa18.93■□□□□ 0.62
TCOF1-201ENST00000323668 U2SURPO15042 1029 aaKnown RBP18.93■□□□□ 0.62
TCOF1-201ENST00000323668 ABCA10Q8WWZ4 1543 aa18.92■□□□□ 0.62
TCOF1-201ENST00000323668 CRBNQ96SW2 442 aa18.92■□□□□ 0.62
TCOF1-201ENST00000323668 BRD4O60885 1362 aaPredicted RBP18.91■□□□□ 0.62
TCOF1-201ENST00000323668 CCDC146Q8IYE0 955 aa18.9■□□□□ 0.62
TCOF1-201ENST00000323668 CENPQQ7L2Z9 268 aaPredicted RBP18.9■□□□□ 0.62
TCOF1-201ENST00000323668 PNISRQ8TF01 805 aaKnown RBP18.9■□□□□ 0.62
TCOF1-201ENST00000323668 C11orf95C9JLR9 678 aaPredicted RBP18.89■□□□□ 0.61
TCOF1-201ENST00000323668 DNMBPQ6XZF7 1577 aa18.89■□□□□ 0.61
TCOF1-201ENST00000323668 GOLGA6L22H0YM25 854 aa18.88■□□□□ 0.61
TCOF1-201ENST00000323668 EIF3AQ14152 1382 aaKnown RBP18.88■□□□□ 0.61
TCOF1-201ENST00000323668 GLIPR1L2Q4G1C9 344 aa18.87■□□□□ 0.61
TCOF1-201ENST00000323668 TRIM44Q96DX7 344 aaPredicted RBP18.87■□□□□ 0.61
TCOF1-201ENST00000323668 SUPT6HQ7KZ85 1726 aaKnown RBP18.87■□□□□ 0.61
TCOF1-201ENST00000323668 AKNAQ7Z591 1439 aa18.87■□□□□ 0.61
TCOF1-201ENST00000323668 POGKQ9P215 609 aa18.86■□□□□ 0.61
TCOF1-201ENST00000323668 KIAA1107Q9UPP5 1409 aa18.85■□□□□ 0.61
TCOF1-201ENST00000323668 FAM161AQ3B820 660 aa18.85■□□□□ 0.61
TCOF1-201ENST00000323668 SMG6Q86US8 1419 aaKnown RBP18.84■□□□□ 0.61
TCOF1-201ENST00000323668 SPAG9O60271 1321 aaKnown RBP18.84■□□□□ 0.61
TCOF1-201ENST00000323668 RWDD1Q9H446 243 aaPredicted RBP18.84■□□□□ 0.61
TCOF1-201ENST00000323668 KIF3BO15066 747 aa18.84■□□□□ 0.61
TCOF1-201ENST00000323668 PTPRGP23470 1445 aa18.84■□□□□ 0.61
TCOF1-201ENST00000323668 GRIN2BQ13224 1484 aa18.84■□□□□ 0.61
TCOF1-201ENST00000323668 CHMP4BQ9H444 224 aaKnown RBP18.83■□□□□ 0.61
TCOF1-201ENST00000323668 CENPJQ9HC77 1338 aaPredicted RBP18.83■□□□□ 0.61
TCOF1-201ENST00000323668 U2AF1L5P0DN76 240 aaPredicted RBP18.83■□□□□ 0.6
TCOF1-201ENST00000323668 U2AF1Q01081 240 aaKnown RBP eCLIP18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms