RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 ABCC1P33527 1531 aa12.34□□□□□ -0.43
CNOT4-201ENST00000315544 NEO1Q92859 1461 aa12.34□□□□□ -0.43
CNOT4-201ENST00000315544 DNMT1P26358 1616 aaKnown RBP12.33□□□□□ -0.44
CNOT4-201ENST00000315544 AKNAQ7Z591 1439 aa12.33□□□□□ -0.44
CNOT4-201ENST00000315544 ARHGEF5Q12774 1597 aa12.33□□□□□ -0.44
CNOT4-201ENST00000315544 KIDINS220Q9ULH0 1771 aa12.33□□□□□ -0.44
CNOT4-201ENST00000315544 RNF17Q9BXT8 1623 aaKnown RBP12.32□□□□□ -0.44
CNOT4-201ENST00000315544 EIF2AK4Q9P2K8 1649 aaKnown RBP12.31□□□□□ -0.44
CNOT4-201ENST00000315544 ASXL2Q76L83 1435 aa12.31□□□□□ -0.44
CNOT4-201ENST00000315544 ZNF142P52746 1687 aaPredicted RBP12.31□□□□□ -0.44
CNOT4-201ENST00000315544 MBD5Q9P267 1494 aa12.31□□□□□ -0.44
CNOT4-201ENST00000315544 SAMD9LQ8IVG5 1584 aa12.31□□□□□ -0.44
CNOT4-201ENST00000315544 JPH4Q96JJ6 628 aa12.29□□□□□ -0.44
CNOT4-201ENST00000315544 KDM5AP29375 1690 aaKnown RBP12.29□□□□□ -0.44
CNOT4-201ENST00000315544 EHBP1L1Q8N3D4 1523 aa12.29□□□□□ -0.44
CNOT4-201ENST00000315544 FAM9AQ8IZU1 332 aaPredicted RBP12.28□□□□□ -0.44
CNOT4-201ENST00000315544 ABCA6Q8N139 1617 aa12.28□□□□□ -0.44
CNOT4-201ENST00000315544 FER1L4A9Z1Z3 1794 aa12.27□□□□□ -0.45
CNOT4-201ENST00000315544 TSPOAP1O95153 1857 aa12.26□□□□□ -0.45
CNOT4-201ENST00000315544 ZC3H13Q5T200 1668 aaKnown RBP12.25□□□□□ -0.45
CNOT4-201ENST00000315544 AGLP35573 1532 aa12.25□□□□□ -0.45
CNOT4-201ENST00000315544 CHMP7Q8WUX9 453 aaPredicted RBP12.25□□□□□ -0.45
CNOT4-201ENST00000315544 KDM5DQ9BY66 1539 aa12.25□□□□□ -0.45
CNOT4-201ENST00000315544 HFM1A2PYH4 1435 aa12.24□□□□□ -0.45
CNOT4-201ENST00000315544 DIP2CQ9Y2E4 1556 aa12.24□□□□□ -0.45
CNOT4-201ENST00000315544 MROH1Q8NDA8 1641 aa12.24□□□□□ -0.45
CNOT4-201ENST00000315544 FHOD3Q2V2M9 1422 aa12.23□□□□□ -0.45
CNOT4-201ENST00000315544 COL17A1Q9UMD9 1497 aaPredicted RBP12.23□□□□□ -0.45
CNOT4-201ENST00000315544 PTPRGP23470 1445 aa12.23□□□□□ -0.45
CNOT4-201ENST00000315544 TEX14Q8IWB6 1497 aa12.22□□□□□ -0.45
CNOT4-201ENST00000315544 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.22□□□□□ -0.45
CNOT4-201ENST00000315544 VWDEQ8N2E2 1590 aa12.22□□□□□ -0.45
CNOT4-201ENST00000315544 HECW2Q9P2P5 1572 aa12.22□□□□□ -0.45
CNOT4-201ENST00000315544 NCOA2Q15596 1464 aa12.22□□□□□ -0.45
CNOT4-201ENST00000315544 FMN1Q68DA7 1419 aa12.21□□□□□ -0.45
CNOT4-201ENST00000315544 CCNB3Q8WWL7 1395 aa12.21□□□□□ -0.45
CNOT4-201ENST00000315544 ARHGEF12Q9NZN5 1544 aa12.21□□□□□ -0.45
CNOT4-201ENST00000315544 MAGI2Q86UL8 1455 aa12.2□□□□□ -0.46
CNOT4-201ENST00000315544 NAIPQ13075 1403 aa12.18□□□□□ -0.46
CNOT4-201ENST00000315544 CDK13Q14004 1512 aaKnown RBP12.18□□□□□ -0.46
CNOT4-201ENST00000315544 ZFYVE16Q7Z3T8 1539 aa12.18□□□□□ -0.46
CNOT4-201ENST00000315544 CAMSAP2Q08AD1 1489 aa12.17□□□□□ -0.46
CNOT4-201ENST00000315544 FGD6Q6ZV73 1430 aa12.17□□□□□ -0.46
CNOT4-201ENST00000315544 ADGRL2O95490 1459 aa12.16□□□□□ -0.46
CNOT4-201ENST00000315544 NEUROD1Q13562 356 aa12.15□□□□□ -0.46
CNOT4-201ENST00000315544 SPATA31E1Q6ZUB1 1445 aa12.15□□□□□ -0.47
CNOT4-201ENST00000315544 LAMC1P11047 1609 aa12.15□□□□□ -0.47
CNOT4-201ENST00000315544 MLH3Q9UHC1 1453 aa12.13□□□□□ -0.47
CNOT4-201ENST00000315544 RAB3GAP2Q9H2M9 1393 aa12.13□□□□□ -0.47
CNOT4-201ENST00000315544 PLCH2O75038 1416 aa12.13□□□□□ -0.47
CNOT4-201ENST00000315544 TROQ12816 1431 aaPredicted RBP12.12□□□□□ -0.47
CNOT4-201ENST00000315544 SHANK2Q9UPX8 1470 aa12.11□□□□□ -0.47
CNOT4-201ENST00000315544 UNC13BO14795 1591 aa12.11□□□□□ -0.47
CNOT4-201ENST00000315544 C3P01024 1663 aa12.11□□□□□ -0.47
CNOT4-201ENST00000315544 ACIN1Q9UKV3 1341 aaKnown RBP12.1□□□□□ -0.47
CNOT4-201ENST00000315544 POGZQ7Z3K3 1410 aa12.1□□□□□ -0.47
CNOT4-201ENST00000315544 PREX1Q8TCU6 1659 aa12.09□□□□□ -0.47
CNOT4-201ENST00000315544 IFT172Q9UG01 1749 aa12.09□□□□□ -0.47
CNOT4-201ENST00000315544 KIAA1107Q9UPP5 1409 aa12.09□□□□□ -0.47
CNOT4-201ENST00000315544 MYOM3Q5VTT5 1437 aa12.07□□□□□ -0.48
CNOT4-201ENST00000315544 PIK3C2BO00750 1634 aa12.07□□□□□ -0.48
CNOT4-201ENST00000315544 SETD5Q9C0A6 1442 aa12.07□□□□□ -0.48
CNOT4-201ENST00000315544 PZPP20742 1482 aa12.06□□□□□ -0.48
CNOT4-201ENST00000315544 PRDM15P57071 1507 aaPredicted RBP12.06□□□□□ -0.48
CNOT4-201ENST00000315544 GPATCH8Q9UKJ3 1502 aaKnown RBP12.06□□□□□ -0.48
CNOT4-201ENST00000315544 LMTK2Q8IWU2 1503 aa12.05□□□□□ -0.48
CNOT4-201ENST00000315544 MIA2Q96PC5 1412 aa12.04□□□□□ -0.48
CNOT4-201ENST00000315544 NEURL4Q96JN8 1562 aa12.04□□□□□ -0.48
CNOT4-201ENST00000315544 STRCQ7RTU9 1775 aa12.03□□□□□ -0.48
CNOT4-201ENST00000315544 ZNF316A6NFI3 1004 aaPredicted RBP12.02□□□□□ -0.48
CNOT4-201ENST00000315544 TRPM1Q7Z4N2 1603 aa12.02□□□□□ -0.48
CNOT4-201ENST00000315544 PPP1R15AO75807 674 aaPredicted RBP12.02□□□□□ -0.49
CNOT4-201ENST00000315544 MADDQ8WXG6 1647 aa12.01□□□□□ -0.49
CNOT4-201ENST00000315544 RTEL1-TNFRSF6BF6WH68 1400 aa12.01□□□□□ -0.49
CNOT4-201ENST00000315544 ROCK1Q13464 1354 aa11.99□□□□□ -0.49
CNOT4-201ENST00000315544 MYOM1P52179 1685 aa11.98□□□□□ -0.49
CNOT4-201ENST00000315544 IQGAP3Q86VI3 1631 aa11.98□□□□□ -0.49
CNOT4-201ENST00000315544 ATP7AQ04656 1500 aa11.98□□□□□ -0.49
CNOT4-201ENST00000315544 MYO3AQ8NEV4 1616 aa11.98□□□□□ -0.49
CNOT4-201ENST00000315544 CAMSAP1Q5T5Y3 1602 aa11.97□□□□□ -0.49
CNOT4-201ENST00000315544 ZNF518AQ6AHZ1 1483 aa11.96□□□□□ -0.49
CNOT4-201ENST00000315544 SETD1AO15047 1707 aaKnown RBP11.96□□□□□ -0.49
CNOT4-201ENST00000315544 PLEKHH2Q8IVE3 1493 aa11.96□□□□□ -0.5
CNOT4-201ENST00000315544 FANCAO15360 1455 aa11.96□□□□□ -0.5
CNOT4-201ENST00000315544 RPRD2Q5VT52 1461 aaKnown RBP11.95□□□□□ -0.5
CNOT4-201ENST00000315544 IQGAP1P46940 1657 aa11.95□□□□□ -0.5
CNOT4-201ENST00000315544 CD109Q6YHK3 1445 aa11.95□□□□□ -0.5
CNOT4-201ENST00000315544 DIEXFQ68CQ4 756 aaKnown RBP11.94□□□□□ -0.5
CNOT4-201ENST00000315544 MIER1Q8N108 512 aa11.94□□□□□ -0.5
CNOT4-201ENST00000315544 SYCP2Q9BX26 1530 aa11.94□□□□□ -0.5
CNOT4-201ENST00000315544 RIMS1Q86UR5 1692 aaKnown RBP11.93□□□□□ -0.5
CNOT4-201ENST00000315544 ABCC5O15440 1437 aa11.93□□□□□ -0.5
CNOT4-201ENST00000315544 SPATA31D1Q6ZQQ2 1576 aa11.93□□□□□ -0.5
CNOT4-201ENST00000315544 UHRF1BP1Q6BDS2 1440 aa11.92□□□□□ -0.5
CNOT4-201ENST00000315544 CEP152O94986 1710 aa11.92□□□□□ -0.5
CNOT4-201ENST00000315544 CLTCQ00610 1675 aaKnown RBP11.91□□□□□ -0.5
CNOT4-201ENST00000315544 DAPK1P53355 1430 aa11.9□□□□□ -0.5
CNOT4-201ENST00000315544 UBR1Q8IWV7 1749 aa11.9□□□□□ -0.51
CNOT4-201ENST00000315544 TET3O43151 1660 aa11.89□□□□□ -0.51
CNOT4-201ENST00000315544 SPHKAPQ2M3C7 1700 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms