RNA–Protein interactions for RNA: ENST00000309279.11

CHD6-201, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 1 (best) BASIC

Gene CHD6, Length 1,635 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-201ENST00000309279 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.79□□□□□ -0.36
CHD6-201ENST00000309279 CD109Q6YHK3 1445 aa12.78□□□□□ -0.36
CHD6-201ENST00000309279 MTUS2Q5JR59 1369 aa12.78□□□□□ -0.36
CHD6-201ENST00000309279 KIF14Q15058 1648 aa12.77□□□□□ -0.36
CHD6-201ENST00000309279 GTF3C3Q9Y5Q9 886 aa12.77□□□□□ -0.36
CHD6-201ENST00000309279 PPRC1Q5VV67 1664 aaKnown RBP12.77□□□□□ -0.37
CHD6-201ENST00000309279 TSPOAP1O95153 1857 aa12.77□□□□□ -0.37
CHD6-201ENST00000309279 SLC4A1APQ9BWU0 796 aaKnown RBP12.77□□□□□ -0.37
CHD6-201ENST00000309279 LRRC9Q6ZRR7 1453 aa12.76□□□□□ -0.37
CHD6-201ENST00000309279 EHBP1L1Q8N3D4 1523 aa12.76□□□□□ -0.37
CHD6-201ENST00000309279 PLCB2Q00722 1185 aa12.76□□□□□ -0.37
CHD6-201ENST00000309279 TTC37Q6PGP7 1564 aa12.75□□□□□ -0.37
CHD6-201ENST00000309279 KANK4Q5T7N3 995 aaPredicted RBP12.74□□□□□ -0.37
CHD6-201ENST00000309279 TEX14Q8IWB6 1497 aa12.73□□□□□ -0.37
CHD6-201ENST00000309279 PLCH2O75038 1416 aa12.73□□□□□ -0.37
CHD6-201ENST00000309279 ARAP3Q8WWN8 1544 aa12.72□□□□□ -0.37
CHD6-201ENST00000309279 MYO5CQ9NQX4 1742 aa12.72□□□□□ -0.37
CHD6-201ENST00000309279 SUPT6HQ7KZ85 1726 aaKnown RBP12.71□□□□□ -0.37
CHD6-201ENST00000309279 CDC42BPAQ5VT25 1732 aa12.7□□□□□ -0.38
CHD6-201ENST00000309279 NCOA2Q15596 1464 aa12.7□□□□□ -0.38
CHD6-201ENST00000309279 PHLDB1Q86UU1 1377 aa12.7□□□□□ -0.38
CHD6-201ENST00000309279 CDC42BPBQ9Y5S2 1711 aa12.69□□□□□ -0.38
CHD6-201ENST00000309279 GPATCH8Q9UKJ3 1502 aaKnown RBP12.69□□□□□ -0.38
CHD6-201ENST00000309279 NEO1Q92859 1461 aa12.69□□□□□ -0.38
CHD6-201ENST00000309279 PREX2Q70Z35 1606 aa12.68□□□□□ -0.38
CHD6-201ENST00000309279 FANCAO15360 1455 aa12.68□□□□□ -0.38
CHD6-201ENST00000309279 CCNB3Q8WWL7 1395 aa12.67□□□□□ -0.38
CHD6-201ENST00000309279 EFCAB2Q5VUJ9 269 aa12.66□□□□□ -0.38
CHD6-201ENST00000309279 CFAP74Q9C0B2 1584 aa12.66□□□□□ -0.38
CHD6-201ENST00000309279 AKNAQ7Z591 1439 aa12.65□□□□□ -0.38
CHD6-201ENST00000309279 ARHGAP5Q13017 1502 aa12.65□□□□□ -0.38
CHD6-201ENST00000309279 ITSN2Q9NZM3 1697 aa12.64□□□□□ -0.39
CHD6-201ENST00000309279 COL17A1Q9UMD9 1497 aaPredicted RBP12.64□□□□□ -0.39
CHD6-201ENST00000309279 CFDP1Q9UEE9 299 aaPredicted RBP12.63□□□□□ -0.39
CHD6-201ENST00000309279 KDM6BO15054 1643 aa12.63□□□□□ -0.39
CHD6-201ENST00000309279 MYOM3Q5VTT5 1437 aa12.62□□□□□ -0.39
CHD6-201ENST00000309279 ADGRL1O94910 1474 aa12.6□□□□□ -0.39
CHD6-201ENST00000309279 MIA2Q96PC5 1412 aa12.6□□□□□ -0.39
CHD6-201ENST00000309279 SAMD9LQ8IVG5 1584 aa12.6□□□□□ -0.39
CHD6-201ENST00000309279 SCAPERQ9BY12 1400 aa12.59□□□□□ -0.39
CHD6-201ENST00000309279 KIAA1107Q9UPP5 1409 aa12.59□□□□□ -0.39
CHD6-201ENST00000309279 ABCC1P33527 1531 aa12.59□□□□□ -0.39
CHD6-201ENST00000309279 DENND4BO75064 1496 aaPredicted RBP12.59□□□□□ -0.39
CHD6-201ENST00000309279 PLEKHH2Q8IVE3 1493 aa12.58□□□□□ -0.4
CHD6-201ENST00000309279 NPM2Q86SE8 214 aaKnown RBP12.58□□□□□ -0.4
CHD6-201ENST00000309279 ARHGEF12Q9NZN5 1544 aa12.58□□□□□ -0.4
CHD6-201ENST00000309279 RICTORQ6R327 1708 aa12.57□□□□□ -0.4
CHD6-201ENST00000309279 ZNF644Q9H582 1327 aaPredicted RBP12.57□□□□□ -0.4
CHD6-201ENST00000309279 RAPGEF3O95398 923 aa12.57□□□□□ -0.4
CHD6-201ENST00000309279 HAP1P54257 671 aaPredicted RBP12.57□□□□□ -0.4
CHD6-201ENST00000309279 PPARGC1BQ86YN6 1023 aaKnown RBP12.57□□□□□ -0.4
CHD6-201ENST00000309279 ZNF777Q9ULD5 760 aaPredicted RBP12.57□□□□□ -0.4
CHD6-201ENST00000309279 FRMPD1Q5SYB0 1578 aa12.56□□□□□ -0.4
CHD6-201ENST00000309279 FGD6Q6ZV73 1430 aa12.56□□□□□ -0.4
CHD6-201ENST00000309279 POGZQ7Z3K3 1410 aa12.56□□□□□ -0.4
CHD6-201ENST00000309279 MBD5Q9P267 1494 aa12.55□□□□□ -0.4
CHD6-201ENST00000309279 CAMSAP2Q08AD1 1489 aa12.55□□□□□ -0.4
CHD6-201ENST00000309279 ZNF518AQ6AHZ1 1483 aa12.55□□□□□ -0.4
CHD6-201ENST00000309279 SYCP2Q9BX26 1530 aa12.54□□□□□ -0.4
CHD6-201ENST00000309279 HNRNPMP52272 730 aaKnown RBP eCLIP12.54□□□□□ -0.44e-7■■■■□ 20.9
CHD6-201ENST00000309279 RSPH4AQ5TD94 716 aa12.54□□□□□ -0.4
CHD6-201ENST00000309279 AFAP1Q8N556 730 aa12.54□□□□□ -0.4
CHD6-201ENST00000309279 TRAPPC8Q9Y2L5 1435 aa12.54□□□□□ -0.4
CHD6-201ENST00000309279 PTPN23Q9H3S7 1636 aa12.53□□□□□ -0.4
CHD6-201ENST00000309279 TCOF1Q13428 1488 aaKnown RBP12.53□□□□□ -0.4
CHD6-201ENST00000309279 KDM5CP41229 1560 aa12.53□□□□□ -0.4
CHD6-201ENST00000309279 ZMYM4Q5VZL5 1548 aa12.53□□□□□ -0.4
CHD6-201ENST00000309279 MAGI2Q86UL8 1455 aa12.51□□□□□ -0.41
CHD6-201ENST00000309279 ARHGEF5Q12774 1597 aa12.51□□□□□ -0.41
CHD6-201ENST00000309279 MLH3Q9UHC1 1453 aa12.5□□□□□ -0.41
CHD6-201ENST00000309279 TMEM132AQ24JP5 1023 aa12.5□□□□□ -0.41
CHD6-201ENST00000309279 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.49□□□□□ -0.41
CHD6-201ENST00000309279 CCDC141Q6ZP82 1450 aa12.49□□□□□ -0.41
CHD6-201ENST00000309279 RRBP1Q9P2E9 1410 aaKnown RBP12.48□□□□□ -0.41
CHD6-201ENST00000309279 HECW2Q9P2P5 1572 aa12.48□□□□□ -0.41
CHD6-201ENST00000309279 FBXO3Q9UK99 471 aa12.48□□□□□ -0.41
CHD6-201ENST00000309279 KIDINS220Q9ULH0 1771 aa12.47□□□□□ -0.41
CHD6-201ENST00000309279 RTEL1-TNFRSF6BF6WH68 1400 aa12.47□□□□□ -0.41
CHD6-201ENST00000309279 SPAG9O60271 1321 aaKnown RBP12.47□□□□□ -0.41
CHD6-201ENST00000309279 DNMT1P26358 1616 aaKnown RBP12.46□□□□□ -0.41
CHD6-201ENST00000309279 ZFYVE16Q7Z3T8 1539 aa12.46□□□□□ -0.42
CHD6-201ENST00000309279 ARHGEF40Q8TER5 1519 aa12.46□□□□□ -0.42
CHD6-201ENST00000309279 INO80Q9ULG1 1556 aaPredicted RBP12.46□□□□□ -0.42
CHD6-201ENST00000309279 ABCC5O15440 1437 aa12.45□□□□□ -0.42
CHD6-201ENST00000309279 YEATS2Q9ULM3 1422 aa12.45□□□□□ -0.42
CHD6-201ENST00000309279 TSPY4P0CV99 314 aa12.45□□□□□ -0.42
CHD6-201ENST00000309279 TSPY10P0CW01 314 aa12.45□□□□□ -0.42
CHD6-201ENST00000309279 ATP7AQ04656 1500 aa12.44□□□□□ -0.42
CHD6-201ENST00000309279 FAM50AQ14320 339 aaKnown RBP12.44□□□□□ -0.42
CHD6-201ENST00000309279 MAST1Q9Y2H9 1570 aa12.44□□□□□ -0.42
CHD6-201ENST00000309279 DAPK1P53355 1430 aa12.44□□□□□ -0.42
CHD6-201ENST00000309279 CROCC2H7BZ55 1655 aa12.43□□□□□ -0.42
CHD6-201ENST00000309279 ATP10AO60312 1499 aa12.43□□□□□ -0.42
CHD6-201ENST00000309279 SHANK2Q9UPX8 1470 aa12.43□□□□□ -0.42
CHD6-201ENST00000309279 DIP2CQ9Y2E4 1556 aa12.42□□□□□ -0.42
CHD6-201ENST00000309279 ABCA6Q8N139 1617 aa12.42□□□□□ -0.42
CHD6-201ENST00000309279 C9orf84Q5VXU9 1444 aa12.42□□□□□ -0.42
CHD6-201ENST00000309279 MYT1LQ9UL68 1186 aa12.41□□□□□ -0.42
CHD6-201ENST00000309279 REREQ9P2R6 1566 aa12.41□□□□□ -0.42
CHD6-201ENST00000309279 ADGBQ8N7X0 1667 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms