RNA–Protein interactions for RNA: ENST00000287936.8

HMGCR-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA reductase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCR, Length 4,585 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCR-201ENST00000287936 ROCK1Q13464 1354 aa13.66□□□□□ -0.22
HMGCR-201ENST00000287936 PTPRKQ15262 1439 aa13.66□□□□□ -0.22
HMGCR-201ENST00000287936 PKD2Q13563 968 aa13.65□□□□□ -0.22
HMGCR-201ENST00000287936 TCOF1Q13428 1488 aaKnown RBP13.65□□□□□ -0.22
HMGCR-201ENST00000287936 ADAMTS12P58397 1594 aa13.64□□□□□ -0.23
HMGCR-201ENST00000287936 DAPK1P53355 1430 aa13.64□□□□□ -0.23
HMGCR-201ENST00000287936 DNAJC5BQ9UF47 199 aa13.63□□□□□ -0.23
HMGCR-201ENST00000287936 TMC1Q8TDI8 760 aa13.63□□□□□ -0.23
HMGCR-201ENST00000287936 KDM2AQ9Y2K7 1162 aa13.63□□□□□ -0.23
HMGCR-201ENST00000287936 TROQ12816 1431 aaPredicted RBP13.62□□□□□ -0.23
HMGCR-201ENST00000287936 CARD11Q9BXL7 1154 aa13.62□□□□□ -0.23
HMGCR-201ENST00000287936 ERICH6BQ5W0A0 696 aa13.61□□□□□ -0.23
HMGCR-201ENST00000287936 CNTLNQ9NXG0 1405 aa13.6□□□□□ -0.23
HMGCR-201ENST00000287936 NUP155O75694 1391 aa13.6□□□□□ -0.23
HMGCR-201ENST00000287936 ZNF644Q9H582 1327 aaPredicted RBP13.6□□□□□ -0.23
HMGCR-201ENST00000287936 TSHZ2Q9NRE2 1034 aa13.6□□□□□ -0.23
HMGCR-201ENST00000287936 GRIN2AQ12879 1464 aa13.6□□□□□ -0.23
HMGCR-201ENST00000287936 PBRM1Q86U86 1689 aa13.6□□□□□ -0.23
HMGCR-201ENST00000287936 CCDC7Q96M83 1385 aa13.59□□□□□ -0.23
HMGCR-201ENST00000287936 TARBP1Q13395 1621 aaKnown RBP13.58□□□□□ -0.23
HMGCR-201ENST00000287936 RSPH4AQ5TD94 716 aa13.58□□□□□ -0.23
HMGCR-201ENST00000287936 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.58□□□□□ -0.231e-8■■■■■ 27.7
HMGCR-201ENST00000287936 WASHC2AQ641Q2 1341 aa13.58□□□□□ -0.24
HMGCR-201ENST00000287936 WDR62O43379 1518 aa13.58□□□□□ -0.24
HMGCR-201ENST00000287936 IRX6P78412 446 aaPredicted RBP13.58□□□□□ -0.24
HMGCR-201ENST00000287936 MAGI1Q96QZ7 1491 aaPredicted RBP13.57□□□□□ -0.24
HMGCR-201ENST00000287936 PPP4R2Q9NY27 417 aa13.57□□□□□ -0.24
HMGCR-201ENST00000287936 PRKRIP1Q9H875 184 aaPredicted RBP13.56□□□□□ -0.24
HMGCR-201ENST00000287936 ABCC5O15440 1437 aa13.56□□□□□ -0.24
HMGCR-201ENST00000287936 ROCK2O75116 1388 aaKnown RBP13.56□□□□□ -0.24
HMGCR-201ENST00000287936 ZNF608Q9ULD9 1512 aaPredicted RBP13.56□□□□□ -0.24
HMGCR-201ENST00000287936 PRG4Q92954 1404 aaPredicted RBP13.55□□□□□ -0.24
HMGCR-201ENST00000287936 SYNJ2O15056 1496 aa13.54□□□□□ -0.24
HMGCR-201ENST00000287936 ANKRD50Q9ULJ7 1429 aa13.54□□□□□ -0.24
HMGCR-201ENST00000287936 RAPGEF6Q8TEU7 1601 aa13.54□□□□□ -0.24
HMGCR-201ENST00000287936 ANKRD30BQ9BXX2 1392 aa13.53□□□□□ -0.24
HMGCR-201ENST00000287936 KIAA0556O60303 1618 aa13.53□□□□□ -0.24
HMGCR-201ENST00000287936 DCAF11Q8TEB1 546 aa13.53□□□□□ -0.24
HMGCR-201ENST00000287936 PTPRGP23470 1445 aa13.53□□□□□ -0.24
HMGCR-201ENST00000287936 KIAA1107Q9UPP5 1409 aa13.52□□□□□ -0.24
HMGCR-201ENST00000287936 ARID4BQ4LE39 1312 aaPredicted RBP13.52□□□□□ -0.25
HMGCR-201ENST00000287936 USP47Q96K76 1375 aa13.52□□□□□ -0.25
HMGCR-201ENST00000287936 CAMSAP2Q08AD1 1489 aa13.51□□□□□ -0.25
HMGCR-201ENST00000287936 ARHGEF11O15085 1522 aa13.51□□□□□ -0.25
HMGCR-201ENST00000287936 GCC2Q8IWJ2 1684 aa13.51□□□□□ -0.25
HMGCR-201ENST00000287936 RPRD2Q5VT52 1461 aaKnown RBP13.51□□□□□ -0.25
HMGCR-201ENST00000287936 KIF7Q2M1P5 1343 aa13.51□□□□□ -0.25
HMGCR-201ENST00000287936 NUP153P49790 1475 aaKnown RBP13.5□□□□□ -0.25
HMGCR-201ENST00000287936 HNRNPMP52272 730 aaKnown RBP eCLIP13.5□□□□□ -0.251e-7■■■■■ 40.9
HMGCR-201ENST00000287936 MAGI3Q5TCQ9 1506 aa13.5□□□□□ -0.25
HMGCR-201ENST00000287936 ANP32EQ9BTT0 268 aa13.5□□□□□ -0.25
HMGCR-201ENST00000287936 RGL3Q3MIN7 710 aa13.49□□□□□ -0.25
HMGCR-201ENST00000287936 ZBED9Q6R2W3 1325 aa13.49□□□□□ -0.25
HMGCR-201ENST00000287936 NBPF8Q3BBV2 869 aa13.49□□□□□ -0.25
HMGCR-201ENST00000287936 CCDC136Q96JN2 1154 aa13.49□□□□□ -0.25
HMGCR-201ENST00000287936 ITSN2Q9NZM3 1697 aa13.47□□□□□ -0.25
HMGCR-201ENST00000287936 KIF15Q9NS87 1388 aa13.47□□□□□ -0.25
HMGCR-201ENST00000287936 PLB1Q6P1J6 1458 aa13.47□□□□□ -0.25
HMGCR-201ENST00000287936 C9orf84Q5VXU9 1444 aa13.47□□□□□ -0.25
HMGCR-201ENST00000287936 RALBP1Q15311 655 aa13.47□□□□□ -0.25
HMGCR-201ENST00000287936 RBM19Q9Y4C8 960 aaKnown RBP13.46□□□□□ -0.25
HMGCR-201ENST00000287936 NCOA1Q15788 1441 aa13.46□□□□□ -0.25
HMGCR-201ENST00000287936 DNMT1P26358 1616 aaKnown RBP13.46□□□□□ -0.25
HMGCR-201ENST00000287936 DISP1Q96F81 1524 aa13.46□□□□□ -0.26
HMGCR-201ENST00000287936 KIF14Q15058 1648 aa13.44□□□□□ -0.26
HMGCR-201ENST00000287936 CCDC144AA2RUR9 1427 aa13.44□□□□□ -0.26
HMGCR-201ENST00000287936 GPATCH8Q9UKJ3 1502 aaKnown RBP13.44□□□□□ -0.26
HMGCR-201ENST00000287936 EIF4G3O43432 1585 aaKnown RBP13.43□□□□□ -0.26
HMGCR-201ENST00000287936 ANP32AP39687 249 aaKnown RBP13.43□□□□□ -0.26
HMGCR-201ENST00000287936 CDCA8Q53HL2 280 aa13.43□□□□□ -0.26
HMGCR-201ENST00000287936 EFCAB2Q5VUJ9 269 aa13.43□□□□□ -0.26
HMGCR-201ENST00000287936 KTN1Q86UP2 1357 aaKnown RBP13.42□□□□□ -0.26
HMGCR-201ENST00000287936 TMF1P82094 1093 aa13.41□□□□□ -0.26
HMGCR-201ENST00000287936 NUDCQ9Y266 331 aa13.41□□□□□ -0.26
HMGCR-201ENST00000287936 ST20-MTHFSA0A0A6YYL1 179 aa13.4□□□□□ -0.26
HMGCR-201ENST00000287936 B4GALNT3Q6L9W6 998 aa13.39□□□□□ -0.27
HMGCR-201ENST00000287936 SALL2Q9Y467 1007 aaPredicted RBP13.39□□□□□ -0.27
HMGCR-201ENST00000287936 MYBBP1AQ9BQG0 1328 aaKnown RBP13.38□□□□□ -0.27
HMGCR-201ENST00000287936 WDR43Q15061 677 aaKnown RBP eCLIP13.38□□□□□ -0.27
HMGCR-201ENST00000287936 NPM1P06748 294 aaKnown RBP eCLIP13.37□□□□□ -0.27
HMGCR-201ENST00000287936 KANK1Q14678 1352 aa13.37□□□□□ -0.27
HMGCR-201ENST00000287936 PLEKHH2Q8IVE3 1493 aa13.37□□□□□ -0.27
HMGCR-201ENST00000287936 C11orf95C9JLR9 678 aaPredicted RBP13.36□□□□□ -0.27
HMGCR-201ENST00000287936 DAXXQ9UER7 740 aaPredicted RBP13.36□□□□□ -0.27
HMGCR-201ENST00000287936 LRRIQ1Q96JM4 1722 aa13.36□□□□□ -0.27
HMGCR-201ENST00000287936 ADGRL2O95490 1459 aa13.36□□□□□ -0.27
HMGCR-201ENST00000287936 RTL5Q5HYW3 569 aaPredicted RBP13.36□□□□□ -0.27
HMGCR-201ENST00000287936 CCDC141Q6ZP82 1450 aa13.36□□□□□ -0.27
HMGCR-201ENST00000287936 NLRP13Q86W25 1043 aa13.36□□□□□ -0.27
HMGCR-201ENST00000287936 KNSTRNQ9Y448 316 aa13.36□□□□□ -0.27
HMGCR-201ENST00000287936 NUP160Q12769 1436 aa13.36□□□□□ -0.27
HMGCR-201ENST00000287936 ARHGAP5Q13017 1502 aa13.35□□□□□ -0.27
HMGCR-201ENST00000287936 SLC24A1O60721 1099 aa13.35□□□□□ -0.27
HMGCR-201ENST00000287936 SHANK2Q9UPX8 1470 aa13.35□□□□□ -0.27
HMGCR-201ENST00000287936 TEX14Q8IWB6 1497 aa13.34□□□□□ -0.27
HMGCR-201ENST00000287936 PZPP20742 1482 aa13.33□□□□□ -0.28
HMGCR-201ENST00000287936 KDM6BO15054 1643 aa13.33□□□□□ -0.28
HMGCR-201ENST00000287936 ATP10BO94823 1461 aa13.33□□□□□ -0.28
HMGCR-201ENST00000287936 CCDC184Q52MB2 194 aa13.32□□□□□ -0.28
HMGCR-201ENST00000287936 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms