RNA–Protein interactions for RNA: ENST00000286835.11

SCAF4-201, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SCAF4, Length 4,193 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-201ENST00000286835 CNTLNQ9NXG0 1405 aa17.87■□□□□ 0.45
SCAF4-201ENST00000286835 CHGAP10645 457 aaKnown RBP17.87■□□□□ 0.45
SCAF4-201ENST00000286835 RGL3Q3MIN7 710 aa17.87■□□□□ 0.45
SCAF4-201ENST00000286835 HFM1A2PYH4 1435 aa17.85■□□□□ 0.45
SCAF4-201ENST00000286835 PTPRKQ15262 1439 aa17.85■□□□□ 0.45
SCAF4-201ENST00000286835 MYOM3Q5VTT5 1437 aa17.85■□□□□ 0.45
SCAF4-201ENST00000286835 NCOA2Q15596 1464 aa17.85■□□□□ 0.45
SCAF4-201ENST00000286835 NEFMP07197 916 aa17.85■□□□□ 0.45
SCAF4-201ENST00000286835 NAIPQ13075 1403 aa17.85■□□□□ 0.45
SCAF4-201ENST00000286835 AKNAQ7Z591 1439 aa17.85■□□□□ 0.45
SCAF4-201ENST00000286835 PLPPR3Q6T4P5 718 aa17.84■□□□□ 0.45
SCAF4-201ENST00000286835 IPO9Q96P70 1041 aaKnown RBP17.84■□□□□ 0.45
SCAF4-201ENST00000286835 ZNF644Q9H582 1327 aaPredicted RBP17.83■□□□□ 0.45
SCAF4-201ENST00000286835 PKD2Q13563 968 aa17.83■□□□□ 0.45
SCAF4-201ENST00000286835 FYCO1Q9BQS8 1478 aa17.83■□□□□ 0.44
SCAF4-201ENST00000286835 MAP3K1Q13233 1512 aa17.79■□□□□ 0.44
SCAF4-201ENST00000286835 DCAF11Q8TEB1 546 aa17.79■□□□□ 0.44
SCAF4-201ENST00000286835 CC2D1BQ5T0F9 858 aaKnown RBP17.79■□□□□ 0.44
SCAF4-201ENST00000286835 SENP3Q9H4L4 574 aaPredicted RBP17.78■□□□□ 0.44
SCAF4-201ENST00000286835 EXOC6Q8TAG9 804 aa17.78■□□□□ 0.44
SCAF4-201ENST00000286835 CARMIL2Q6F5E8 1435 aa17.77■□□□□ 0.44
SCAF4-201ENST00000286835 TOPBP1Q92547 1522 aa17.77■□□□□ 0.44
SCAF4-201ENST00000286835 POLA1P09884 1462 aaPredicted RBP17.77■□□□□ 0.43
SCAF4-201ENST00000286835 EIF5BO60841 1220 aaKnown RBP17.75■□□□□ 0.43
SCAF4-201ENST00000286835 RCAN3Q9UKA8 241 aa17.75■□□□□ 0.43
SCAF4-201ENST00000286835 PLIN1O60240 522 aa17.74■□□□□ 0.43
SCAF4-201ENST00000286835 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.72■□□□□ 0.435e-6■■■■■ 46.2
SCAF4-201ENST00000286835 ST20-MTHFSA0A0A6YYL1 179 aa17.72■□□□□ 0.43
SCAF4-201ENST00000286835 USP47Q96K76 1375 aa17.72■□□□□ 0.43
SCAF4-201ENST00000286835 ESF1Q9H501 851 aaKnown RBP17.7■□□□□ 0.42
SCAF4-201ENST00000286835 PTPN23Q9H3S7 1636 aa17.69■□□□□ 0.42
SCAF4-201ENST00000286835 RGS3P49796 1198 aa17.68■□□□□ 0.42
SCAF4-201ENST00000286835 SLC4A3P48751 1232 aa17.68■□□□□ 0.42
SCAF4-201ENST00000286835 ARXQ96QS3 562 aa17.68■□□□□ 0.42
SCAF4-201ENST00000286835 PDE4AP27815 886 aa17.67■□□□□ 0.42
SCAF4-201ENST00000286835 CANXP27824 592 aaKnown RBP17.66■□□□□ 0.42
SCAF4-201ENST00000286835 RRP1P56182 461 aaKnown RBP17.66■□□□□ 0.42
SCAF4-201ENST00000286835 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.66■□□□□ 0.42
SCAF4-201ENST00000286835 STAG3Q9UJ98 1225 aa17.66■□□□□ 0.42
SCAF4-201ENST00000286835 EFCAB5A4FU69 1503 aa17.65■□□□□ 0.42
SCAF4-201ENST00000286835 SKAP1Q86WV1 359 aa17.64■□□□□ 0.41
SCAF4-201ENST00000286835 WDR43Q15061 677 aaKnown RBP eCLIP17.64■□□□□ 0.41
SCAF4-201ENST00000286835 NUP155O75694 1391 aa17.64■□□□□ 0.41
SCAF4-201ENST00000286835 TCERG1O14776 1098 aaKnown RBP17.63■□□□□ 0.41
SCAF4-201ENST00000286835 MRC2Q9UBG0 1479 aa17.63■□□□□ 0.41
SCAF4-201ENST00000286835 CDCA7LQ96GN5 454 aa17.62■□□□□ 0.41
SCAF4-201ENST00000286835 IL27Q8NEV9 243 aa17.62■□□□□ 0.41
SCAF4-201ENST00000286835 PPM1GO15355 546 aaPredicted RBP17.61■□□□□ 0.41
SCAF4-201ENST00000286835 PNISRQ8TF01 805 aaKnown RBP17.61■□□□□ 0.41
SCAF4-201ENST00000286835 NCOA1Q15788 1441 aa17.61■□□□□ 0.41
SCAF4-201ENST00000286835 HNRNPMP52272 730 aaKnown RBP eCLIP17.6■□□□□ 0.41
SCAF4-201ENST00000286835 GRIN2BQ13224 1484 aa17.59■□□□□ 0.41
SCAF4-201ENST00000286835 DDRGK1Q96HY6 314 aa17.58■□□□□ 0.41
SCAF4-201ENST00000286835 PTPRGP23470 1445 aa17.58■□□□□ 0.4
SCAF4-201ENST00000286835 ROCK2O75116 1388 aaKnown RBP17.58■□□□□ 0.4
SCAF4-201ENST00000286835 MYBBP1AQ9BQG0 1328 aaKnown RBP17.58■□□□□ 0.4
SCAF4-201ENST00000286835 RALBP1Q15311 655 aa17.58■□□□□ 0.4
SCAF4-201ENST00000286835 SMG6Q86US8 1419 aaKnown RBP17.58■□□□□ 0.4
SCAF4-201ENST00000286835 CFAP43Q8NDM7 1665 aa17.57■□□□□ 0.4
SCAF4-201ENST00000286835 ANO8Q9HCE9 1232 aaPredicted RBP17.57■□□□□ 0.4
SCAF4-201ENST00000286835 DNMBPQ6XZF7 1577 aa17.57■□□□□ 0.4
SCAF4-201ENST00000286835 CRBNQ96SW2 442 aa17.57■□□□□ 0.4
SCAF4-201ENST00000286835 CDK13Q14004 1512 aaKnown RBP17.56■□□□□ 0.4
SCAF4-201ENST00000286835 KTN1Q86UP2 1357 aaKnown RBP17.56■□□□□ 0.4
SCAF4-201ENST00000286835 KIF15Q9NS87 1388 aa17.56■□□□□ 0.4
SCAF4-201ENST00000286835 NLRP13Q86W25 1043 aa17.56■□□□□ 0.4
SCAF4-201ENST00000286835 ANKRD30BQ9BXX2 1392 aa17.56■□□□□ 0.4
SCAF4-201ENST00000286835 SUPT6HQ7KZ85 1726 aaKnown RBP17.55■□□□□ 0.4
SCAF4-201ENST00000286835 EHBP1L1Q8N3D4 1523 aa17.55■□□□□ 0.4
SCAF4-201ENST00000286835 ABCA10Q8WWZ4 1543 aa17.54■□□□□ 0.4
SCAF4-201ENST00000286835 LAMC3Q9Y6N6 1575 aa17.53■□□□□ 0.4
SCAF4-201ENST00000286835 URB2Q14146 1524 aaKnown RBP17.53■□□□□ 0.4
SCAF4-201ENST00000286835 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.52■□□□□ 0.4
SCAF4-201ENST00000286835 CYB5RLQ6IPT4 315 aa17.51■□□□□ 0.39
SCAF4-201ENST00000286835 KNSTRNQ9Y448 316 aa17.51■□□□□ 0.39
SCAF4-201ENST00000286835 ANKRD30AQ9BXX3 1397 aa17.51■□□□□ 0.39
SCAF4-201ENST00000286835 OSCARQ8IYS5 282 aa17.5■□□□□ 0.39
SCAF4-201ENST00000286835 NEUROD2Q15784 382 aa17.5■□□□□ 0.39
SCAF4-201ENST00000286835 EFCAB2Q5VUJ9 269 aa17.5■□□□□ 0.39
SCAF4-201ENST00000286835 SNAPC4Q5SXM2 1469 aa17.49■□□□□ 0.39
SCAF4-201ENST00000286835 IFT140Q96RY7 1462 aa17.49■□□□□ 0.39
SCAF4-201ENST00000286835 PANK3Q9H999 370 aa17.49■□□□□ 0.39
SCAF4-201ENST00000286835 ARID4BQ4LE39 1312 aaPredicted RBP17.48■□□□□ 0.39
SCAF4-201ENST00000286835 DAPK1P53355 1430 aa17.47■□□□□ 0.39
SCAF4-201ENST00000286835 GGT6Q6P531 493 aa17.47■□□□□ 0.39
SCAF4-201ENST00000286835 EPRSP07814 1512 aaKnown RBP17.46■□□□□ 0.39
SCAF4-201ENST00000286835 CCDC146Q8IYE0 955 aa17.46■□□□□ 0.39
SCAF4-201ENST00000286835 RPRD2Q5VT52 1461 aaKnown RBP17.46■□□□□ 0.39
SCAF4-201ENST00000286835 MLECQ14165 292 aa17.45■□□□□ 0.38
SCAF4-201ENST00000286835 BACH2Q9BYV9 841 aa17.45■□□□□ 0.38
SCAF4-201ENST00000286835 TRHP20396 242 aaPredicted RBP17.44■□□□□ 0.38
SCAF4-201ENST00000286835 TMF1P82094 1093 aa17.44■□□□□ 0.38
SCAF4-201ENST00000286835 PDE3BQ13370 1112 aa17.44■□□□□ 0.38
SCAF4-201ENST00000286835 NBPF1Q3BBV0 1214 aa17.44■□□□□ 0.38
SCAF4-201ENST00000286835 ZNF608Q9ULD9 1512 aaPredicted RBP17.44■□□□□ 0.38
SCAF4-201ENST00000286835 FRAT1Q92837 279 aaPredicted RBP17.44■□□□□ 0.38
SCAF4-201ENST00000286835 MIA2Q96PC5 1412 aa17.43■□□□□ 0.38
SCAF4-201ENST00000286835 TNNT2P45379 298 aaPredicted RBP17.43■□□□□ 0.38
SCAF4-201ENST00000286835 PRDM2Q13029 1718 aa17.43■□□□□ 0.38
SCAF4-201ENST00000286835 BRPF3Q9ULD4 1205 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms