RNA–Protein interactions for RNA: ENST00000286835.11

SCAF4-201, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SCAF4, Length 4,193 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-201ENST00000286835 NISCHQ9Y2I1 1504 aa25.02■■□□□ 1.6
SCAF4-201ENST00000286835 DCAF8L2P0C7V8 631 aa23.47■■□□□ 1.35
SCAF4-201ENST00000286835 SHROOM4Q9ULL8 1493 aa23.01■■□□□ 1.27
SCAF4-201ENST00000286835 SUPT5HO00267 1087 aaKnown RBP22.96■■□□□ 1.27
SCAF4-201ENST00000286835 PCGF6Q9BYE7 350 aa22.15■■□□□ 1.14
SCAF4-201ENST00000286835 HRCP23327 699 aa21.88■■□□□ 1.09
SCAF4-201ENST00000286835 CHIC1Q5VXU3 224 aa21.77■■□□□ 1.08
SCAF4-201ENST00000286835 PPARGC1BQ86YN6 1023 aaKnown RBP21.77■■□□□ 1.08
SCAF4-201ENST00000286835 EHMT2Q96KQ7 1210 aa21.66■■□□□ 1.06
SCAF4-201ENST00000286835 LOC105371045A0A1W2PR82 267 aa21.58■■□□□ 1.04
SCAF4-201ENST00000286835 FAM9AQ8IZU1 332 aaPredicted RBP21.42■■□□□ 1.02
SCAF4-201ENST00000286835 MYO15BQ96JP2 1530 aa21.39■■□□□ 1.01
SCAF4-201ENST00000286835 TRIM26Q12899 539 aaPredicted RBP21.19■□□□□ 0.98
SCAF4-201ENST00000286835 ABCC9O60706 1549 aa21.09■□□□□ 0.97
SCAF4-201ENST00000286835 TRIM41Q8WV44 630 aa21.09■□□□□ 0.97
SCAF4-201ENST00000286835 ZCCHC6Q5VYS8 1495 aaKnown RBP21.07■□□□□ 0.96
SCAF4-201ENST00000286835 TTBK1Q5TCY1 1321 aaPredicted RBP20.99■□□□□ 0.95
SCAF4-201ENST00000286835 ZEB1P37275 1124 aaPredicted RBP20.94■□□□□ 0.94
SCAF4-201ENST00000286835 DCAF1Q9Y4B6 1507 aa20.77■□□□□ 0.92
SCAF4-201ENST00000286835 CCER1Q8TC90 406 aaPredicted RBP20.77■□□□□ 0.91
SCAF4-201ENST00000286835 PELP1Q8IZL8 1130 aaKnown RBP20.67■□□□□ 0.9
SCAF4-201ENST00000286835 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.64■□□□□ 0.9
SCAF4-201ENST00000286835 PABPN1Q86U42 306 aaKnown RBP eCLIP20.63■□□□□ 0.89
SCAF4-201ENST00000286835 CCDC180Q9P1Z9 1646 aa20.52■□□□□ 0.87
SCAF4-201ENST00000286835 SCAF1Q9H7N4 1312 aaKnown RBP20.51■□□□□ 0.87
SCAF4-201ENST00000286835 YTHDC1Q96MU7 727 aaKnown RBP20.46■□□□□ 0.87
SCAF4-201ENST00000286835 CENPBP07199 599 aaPredicted RBP20.45■□□□□ 0.86
SCAF4-201ENST00000286835 DIEXFQ68CQ4 756 aaKnown RBP20.33■□□□□ 0.85
SCAF4-201ENST00000286835 RANGAP1P46060 587 aaPredicted RBP20.31■□□□□ 0.84
SCAF4-201ENST00000286835 UBTFP17480 764 aaKnown RBP20.3■□□□□ 0.84
SCAF4-201ENST00000286835 GTF3C3Q9Y5Q9 886 aa20.29■□□□□ 0.84
SCAF4-201ENST00000286835 ACIN1Q9UKV3 1341 aaKnown RBP20.24■□□□□ 0.83
SCAF4-201ENST00000286835 NEUROD1Q13562 356 aa20.23■□□□□ 0.83
SCAF4-201ENST00000286835 SCRIBQ14160 1630 aa20.21■□□□□ 0.83
SCAF4-201ENST00000286835 RSF1Q96T23 1441 aaPredicted RBP20.18■□□□□ 0.82
SCAF4-201ENST00000286835 HNRNPUL2Q1KMD3 747 aaKnown RBP20.13■□□□□ 0.81
SCAF4-201ENST00000286835 APLP2Q06481 763 aa20.1■□□□□ 0.81
SCAF4-201ENST00000286835 RB1CC1Q8TDY2 1594 aa19.96■□□□□ 0.79
SCAF4-201ENST00000286835 ZNF316A6NFI3 1004 aaPredicted RBP19.9■□□□□ 0.78
SCAF4-201ENST00000286835 CECR2Q9BXF3 1484 aa19.82■□□□□ 0.76
SCAF4-201ENST00000286835 ATP1B4Q9UN42 357 aaPredicted RBP19.79■□□□□ 0.76
SCAF4-201ENST00000286835 MYT1Q01538 1121 aa19.75■□□□□ 0.75
SCAF4-201ENST00000286835 CSRNP3Q8WYN3 585 aa19.74■□□□□ 0.75
SCAF4-201ENST00000286835 MIER1Q8N108 512 aa19.73■□□□□ 0.75
SCAF4-201ENST00000286835 ITGAEP38570 1179 aa19.7■□□□□ 0.74
SCAF4-201ENST00000286835 NACADO15069 1562 aa19.68■□□□□ 0.74
SCAF4-201ENST00000286835 CEP162Q5TB80 1403 aa19.64■□□□□ 0.73
SCAF4-201ENST00000286835 MROH2BQ7Z745 1585 aa19.63■□□□□ 0.73
SCAF4-201ENST00000286835 SOGA1O94964 1423 aa19.53■□□□□ 0.72
SCAF4-201ENST00000286835 ABCC8Q09428 1581 aa19.51■□□□□ 0.71
SCAF4-201ENST00000286835 WIZO95785 1651 aa19.5■□□□□ 0.71
SCAF4-201ENST00000286835 CCDC88BA6NC98 1476 aa19.48■□□□□ 0.71
SCAF4-201ENST00000286835 BCANQ96GW7 911 aa19.47■□□□□ 0.71
SCAF4-201ENST00000286835 TNIKQ9UKE5 1360 aa19.41■□□□□ 0.7
SCAF4-201ENST00000286835 RUSC2Q8N2Y8 1516 aa19.32■□□□□ 0.68
SCAF4-201ENST00000286835 CLIP1P30622 1438 aa19.31■□□□□ 0.68
SCAF4-201ENST00000286835 NEFLP07196 543 aa19.29■□□□□ 0.68
SCAF4-201ENST00000286835 GOLGA3Q08378 1498 aa19.28■□□□□ 0.68
SCAF4-201ENST00000286835 BAZ1AQ9NRL2 1556 aaPredicted RBP19.23■□□□□ 0.67
SCAF4-201ENST00000286835 WRNQ14191 1432 aaPredicted RBP eCLIP19.22■□□□□ 0.671e-8■■■■■ 41.8
SCAF4-201ENST00000286835 EEA1Q15075 1411 aa19.18■□□□□ 0.66
SCAF4-201ENST00000286835 FAM50AQ14320 339 aaKnown RBP19.18■□□□□ 0.66
SCAF4-201ENST00000286835 SUPT16HQ9Y5B9 1047 aaKnown RBP19.16■□□□□ 0.66
SCAF4-201ENST00000286835 DDX10Q13206 875 aaKnown RBP19.13■□□□□ 0.65
SCAF4-201ENST00000286835 FBLN2P98095 1184 aa19.13■□□□□ 0.65
SCAF4-201ENST00000286835 FKBP8Q14318 412 aa19.12■□□□□ 0.65
SCAF4-201ENST00000286835 HIRIP3Q9BW71 556 aaPredicted RBP19.12■□□□□ 0.65
SCAF4-201ENST00000286835 BAZ1BQ9UIG0 1483 aaKnown RBP19.11■□□□□ 0.65
SCAF4-201ENST00000286835 P3H3Q8IVL6 736 aa19.1■□□□□ 0.65
SCAF4-201ENST00000286835 CEP164Q9UPV0 1460 aa19.08■□□□□ 0.64
SCAF4-201ENST00000286835 ERICH6Q7L0X2 663 aa19.08■□□□□ 0.64
SCAF4-201ENST00000286835 TRIM52Q96A61 297 aa19.04■□□□□ 0.64
SCAF4-201ENST00000286835 KANK4Q5T7N3 995 aaPredicted RBP19.04■□□□□ 0.64
SCAF4-201ENST00000286835 TOP2AP11388 1531 aaKnown RBP19.03■□□□□ 0.64
SCAF4-201ENST00000286835 VPS8Q8N3P4 1428 aa19.02■□□□□ 0.63
SCAF4-201ENST00000286835 KCNH8Q96L42 1107 aa19.01■□□□□ 0.63
SCAF4-201ENST00000286835 CNGB1Q14028 1251 aaPredicted RBP18.99■□□□□ 0.63
SCAF4-201ENST00000286835 CLSPNQ9HAW4 1339 aa18.95■□□□□ 0.62
SCAF4-201ENST00000286835 ARID3CA6NKF2 412 aa18.95■□□□□ 0.62
SCAF4-201ENST00000286835 ANP32CO43423 234 aa18.95■□□□□ 0.62
SCAF4-201ENST00000286835 SMARCA2P51531 1590 aa18.94■□□□□ 0.62
SCAF4-201ENST00000286835 RAPGEF2Q9Y4G8 1499 aa18.93■□□□□ 0.62
SCAF4-201ENST00000286835 SIN3AQ96ST3 1273 aa18.92■□□□□ 0.62
SCAF4-201ENST00000286835 TSHZ2Q9NRE2 1034 aa18.92■□□□□ 0.62
SCAF4-201ENST00000286835 SMARCA4P51532 1647 aa18.89■□□□□ 0.61
SCAF4-201ENST00000286835 DHX57Q6P158 1386 aaKnown RBP18.88■□□□□ 0.61
SCAF4-201ENST00000286835 ANP32EQ9BTT0 268 aa18.87■□□□□ 0.61
SCAF4-201ENST00000286835 IRX6P78412 446 aaPredicted RBP18.85■□□□□ 0.61
SCAF4-201ENST00000286835 POLR3GLQ9BT43 218 aa18.79■□□□□ 0.6
SCAF4-201ENST00000286835 CCNB3Q8WWL7 1395 aa18.78■□□□□ 0.6
SCAF4-201ENST00000286835 HNRNPUQ00839 825 aaKnown RBP eCLIP18.76■□□□□ 0.59
SCAF4-201ENST00000286835 MYT1LQ9UL68 1186 aa18.75■□□□□ 0.59
SCAF4-201ENST00000286835 ATAD2BQ9ULI0 1458 aa18.73■□□□□ 0.59
SCAF4-201ENST00000286835 CDK11AQ9UQ88 783 aaPredicted RBP18.71■□□□□ 0.59
SCAF4-201ENST00000286835 RAB3GAP2Q9H2M9 1393 aa18.7■□□□□ 0.58
SCAF4-201ENST00000286835 EIF4G1Q04637 1599 aaKnown RBP18.69■□□□□ 0.58
SCAF4-201ENST00000286835 TONSLQ96HA7 1378 aa18.69■□□□□ 0.58
SCAF4-201ENST00000286835 SYNJ1O43426 1573 aa18.68■□□□□ 0.58
SCAF4-201ENST00000286835 KIF21BO75037 1637 aa18.68■□□□□ 0.58
SCAF4-201ENST00000286835 RBM19Q9Y4C8 960 aaKnown RBP18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms