RNA–Protein interactions for RNA: ENST00000261769.9

CDH1-201, Transcript of cadherin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH1, Length 4,889 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-201ENST00000261769 CCDC136Q96JN2 1154 aa18.3■□□□□ 0.52
CDH1-201ENST00000261769 TNNT2P45379 298 aaPredicted RBP18.3■□□□□ 0.52
CDH1-201ENST00000261769 HSP90AA1P07900 732 aaKnown RBP18.28■□□□□ 0.52
CDH1-201ENST00000261769 NESP48681 1621 aa18.28■□□□□ 0.52
CDH1-201ENST00000261769 U2SURPO15042 1029 aaKnown RBP18.28■□□□□ 0.52
CDH1-201ENST00000261769 FOXD1Q16676 465 aa18.27■□□□□ 0.52
CDH1-201ENST00000261769 RUSC2Q8N2Y8 1516 aa18.27■□□□□ 0.51
CDH1-201ENST00000261769 MORC1Q86VD1 984 aa18.26■□□□□ 0.51
CDH1-201ENST00000261769 SOX12O15370 315 aa18.25■□□□□ 0.51
CDH1-201ENST00000261769 RAB3GAP2Q9H2M9 1393 aa18.25■□□□□ 0.51
CDH1-201ENST00000261769 EIF3AQ14152 1382 aaKnown RBP18.24■□□□□ 0.51
CDH1-201ENST00000261769 NEUROD2Q15784 382 aa18.24■□□□□ 0.51
CDH1-201ENST00000261769 CC2D1BQ5T0F9 858 aaKnown RBP18.24■□□□□ 0.51
CDH1-201ENST00000261769 PAK3O75914 559 aaPredicted RBP18.24■□□□□ 0.51
CDH1-201ENST00000261769 MIER1Q8N108 512 aa18.23■□□□□ 0.51
CDH1-201ENST00000261769 NPHP1O15259 732 aa18.22■□□□□ 0.51
CDH1-201ENST00000261769 LAS1LQ9Y4W2 734 aaKnown RBP18.22■□□□□ 0.51
CDH1-201ENST00000261769 ROCK2O75116 1388 aaKnown RBP18.22■□□□□ 0.51
CDH1-201ENST00000261769 AEBP2Q6ZN18 517 aaPredicted RBP18.2■□□□□ 0.5
CDH1-201ENST00000261769 VGFO15240 615 aaPredicted RBP18.18■□□□□ 0.5
CDH1-201ENST00000261769 TERF2IPQ9NYB0 399 aa18.18■□□□□ 0.5
CDH1-201ENST00000261769 PRG4Q92954 1404 aaPredicted RBP18.18■□□□□ 0.5
CDH1-201ENST00000261769 CSB-PGBD3P0DP91 1061 aa18.17■□□□□ 0.5
CDH1-201ENST00000261769 UACAQ9BZF9 1416 aa18.17■□□□□ 0.5
CDH1-201ENST00000261769 TOPBP1Q92547 1522 aa18.17■□□□□ 0.5
CDH1-201ENST00000261769 CHMP4BQ9H444 224 aaKnown RBP18.16■□□□□ 0.5
CDH1-201ENST00000261769 FTSJ3Q8IY81 847 aaKnown RBP18.16■□□□□ 0.5
CDH1-201ENST00000261769 NGDNQ8NEJ9 315 aaKnown RBP18.15■□□□□ 0.5
CDH1-201ENST00000261769 DNAJC5BQ9UF47 199 aa18.15■□□□□ 0.5
CDH1-201ENST00000261769 HSPA5P11021 654 aaKnown RBP18.14■□□□□ 0.49
CDH1-201ENST00000261769 MYOM3Q5VTT5 1437 aa18.14■□□□□ 0.49
CDH1-201ENST00000261769 CCDC144AA2RUR9 1427 aa18.13■□□□□ 0.49
CDH1-201ENST00000261769 RTF1Q92541 710 aaKnown RBP18.13■□□□□ 0.49
CDH1-201ENST00000261769 MS4A1P11836 297 aa18.13■□□□□ 0.49
CDH1-201ENST00000261769 SYNJ2O15056 1496 aa18.12■□□□□ 0.49
CDH1-201ENST00000261769 NUTM2DQ5VT03 806 aaPredicted RBP18.12■□□□□ 0.49
CDH1-201ENST00000261769 POLA1P09884 1462 aaPredicted RBP18.09■□□□□ 0.49
CDH1-201ENST00000261769 L3MBTL2Q969R5 705 aa18.09■□□□□ 0.49
CDH1-201ENST00000261769 KTN1Q86UP2 1357 aaKnown RBP18.08■□□□□ 0.49
CDH1-201ENST00000261769 CCDC9Q9Y3X0 531 aaKnown RBP18.08■□□□□ 0.48
CDH1-201ENST00000261769 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.07■□□□□ 0.48
CDH1-201ENST00000261769 CHMP4AQ9BY43 222 aa18.07■□□□□ 0.48
CDH1-201ENST00000261769 LAMC3Q9Y6N6 1575 aa18.07■□□□□ 0.48
CDH1-201ENST00000261769 BICRAQ9NZM4 1560 aa18.06■□□□□ 0.48
CDH1-201ENST00000261769 SNAPC4Q5SXM2 1469 aa18.05■□□□□ 0.48
CDH1-201ENST00000261769 EIF5BO60841 1220 aaKnown RBP18.04■□□□□ 0.48
CDH1-201ENST00000261769 TRAK1Q9UPV9 953 aa18.04■□□□□ 0.48
CDH1-201ENST00000261769 CALD1Q05682 793 aaKnown RBP18.04■□□□□ 0.48
CDH1-201ENST00000261769 DNMBPQ6XZF7 1577 aa18.04■□□□□ 0.48
CDH1-201ENST00000261769 CUX1P39880 1505 aa18.01■□□□□ 0.47
CDH1-201ENST00000261769 KIF15Q9NS87 1388 aa18.01■□□□□ 0.47
CDH1-201ENST00000261769 CASKIN1Q8WXD9 1431 aa18.01■□□□□ 0.47
CDH1-201ENST00000261769 PRDM2Q13029 1718 aa18.01■□□□□ 0.47
CDH1-201ENST00000261769 U2AF1L5P0DN76 240 aaPredicted RBP18.01■□□□□ 0.47
CDH1-201ENST00000261769 U2AF1Q01081 240 aaKnown RBP eCLIP18.01■□□□□ 0.47
CDH1-201ENST00000261769 RALBP1Q15311 655 aa18■□□□□ 0.47
CDH1-201ENST00000261769 STAC3Q96MF2 364 aa18■□□□□ 0.47
CDH1-201ENST00000261769 SENP3-EIF4A1A0A087X0R7 540 aa18■□□□□ 0.47
CDH1-201ENST00000261769 FRAT1Q92837 279 aaPredicted RBP18■□□□□ 0.47
CDH1-201ENST00000261769 AMPHP49418 695 aa17.98■□□□□ 0.47
CDH1-201ENST00000261769 ERICH3Q5RHP9 1530 aa17.98■□□□□ 0.47
CDH1-201ENST00000261769 NUTM2FA1L443 756 aa17.98■□□□□ 0.47
CDH1-201ENST00000261769 CASC1Q6TDU7 716 aa17.98■□□□□ 0.47
CDH1-201ENST00000261769 OS9Q13438 667 aaPredicted RBP17.98■□□□□ 0.47
CDH1-201ENST00000261769 IRX6P78412 446 aaPredicted RBP17.97■□□□□ 0.47
CDH1-201ENST00000261769 AFAP1Q8N556 730 aa17.96■□□□□ 0.47
CDH1-201ENST00000261769 FGD6Q6ZV73 1430 aa17.96■□□□□ 0.46
CDH1-201ENST00000261769 ANP32BQ92688 251 aaKnown RBP17.95■□□□□ 0.46
CDH1-201ENST00000261769 ARHGAP5Q13017 1502 aa17.95■□□□□ 0.46
CDH1-201ENST00000261769 EVC2Q86UK5 1308 aa17.95■□□□□ 0.46
CDH1-201ENST00000261769 GOLGA2Q08379 1002 aa17.95■□□□□ 0.46
CDH1-201ENST00000261769 ZNF644Q9H582 1327 aaPredicted RBP17.95■□□□□ 0.46
CDH1-201ENST00000261769 SYNJ1O43426 1573 aa17.94■□□□□ 0.46
CDH1-201ENST00000261769 TOP2BQ02880 1626 aa17.94■□□□□ 0.46
CDH1-201ENST00000261769 FYCO1Q9BQS8 1478 aa17.94■□□□□ 0.46
CDH1-201ENST00000261769 CCER2I3L3R5 266 aa17.93■□□□□ 0.46
CDH1-201ENST00000261769 KIAA0586Q9BVV6 1533 aa17.92■□□□□ 0.46
CDH1-201ENST00000261769 EFCAB5A4FU69 1503 aa17.92■□□□□ 0.46
CDH1-201ENST00000261769 PLEKHH2Q8IVE3 1493 aa17.92■□□□□ 0.46
CDH1-201ENST00000261769 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.9■□□□□ 0.46
CDH1-201ENST00000261769 ANKRD50Q9ULJ7 1429 aa17.9■□□□□ 0.46
CDH1-201ENST00000261769 IPO8O15397 1037 aaKnown RBP17.89■□□□□ 0.45
CDH1-201ENST00000261769 LRRC9Q6ZRR7 1453 aa17.88■□□□□ 0.45
CDH1-201ENST00000261769 NCOA2Q15596 1464 aa17.88■□□□□ 0.45
CDH1-201ENST00000261769 LMOD3Q0VAK6 560 aa17.88■□□□□ 0.45
CDH1-201ENST00000261769 ABCA10Q8WWZ4 1543 aa17.88■□□□□ 0.45
CDH1-201ENST00000261769 KIF21BO75037 1637 aa17.87■□□□□ 0.45
CDH1-201ENST00000261769 ATF3P18847 181 aa17.87■□□□□ 0.45
CDH1-201ENST00000261769 COG3Q96JB2 828 aa17.87■□□□□ 0.45
CDH1-201ENST00000261769 MINK1Q8N4C8 1332 aaPredicted RBP17.87■□□□□ 0.45
CDH1-201ENST00000261769 PRXQ9BXM0 1461 aa17.86■□□□□ 0.45
CDH1-201ENST00000261769 ST20-MTHFSA0A0A6YYL1 179 aa17.86■□□□□ 0.45
CDH1-201ENST00000261769 POGZQ7Z3K3 1410 aa17.86■□□□□ 0.45
CDH1-201ENST00000261769 TROQ12816 1431 aaPredicted RBP17.85■□□□□ 0.45
CDH1-201ENST00000261769 EVA1CP58658 441 aa17.85■□□□□ 0.45
CDH1-201ENST00000261769 LTV1Q96GA3 475 aaPredicted RBP17.85■□□□□ 0.45
CDH1-201ENST00000261769 ZNF330Q9Y3S2 320 aaPredicted RBP17.85■□□□□ 0.45
CDH1-201ENST00000261769 TMX4Q9H1E5 349 aaPredicted RBP17.85■□□□□ 0.45
CDH1-201ENST00000261769 SUPT16HQ9Y5B9 1047 aaKnown RBP17.85■□□□□ 0.45
CDH1-201ENST00000261769 DHX57Q6P158 1386 aaKnown RBP17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms