RNA–Protein interactions for RNA: ENST00000258499.7

USP44-201, Transcript of ubiquitin specific peptidase 44, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP44, Length 4,022 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP44-201ENST00000258499 PLEKHD1A6NEE1 506 aa6.36□□□□□ -1.39
USP44-201ENST00000258499 C11orf95C9JLR9 678 aaPredicted RBP6.36□□□□□ -1.39
USP44-201ENST00000258499 NBPF8Q3BBV2 869 aa6.36□□□□□ -1.39
USP44-201ENST00000258499 HFM1A2PYH4 1435 aa6.36□□□□□ -1.39
USP44-201ENST00000258499 NAIPQ13075 1403 aa6.36□□□□□ -1.39
USP44-201ENST00000258499 GAPVD1Q14C86 1478 aa6.36□□□□□ -1.39
USP44-201ENST00000258499 PTPRKQ15262 1439 aa6.36□□□□□ -1.39
USP44-201ENST00000258499 KIF7Q2M1P5 1343 aa6.36□□□□□ -1.39
USP44-201ENST00000258499 CCDC7Q96M83 1385 aa6.35□□□□□ -1.39
USP44-201ENST00000258499 PDS5BQ9NTI5 1447 aa6.35□□□□□ -1.39
USP44-201ENST00000258499 NOP58Q9Y2X3 529 aaKnown RBP6.34□□□□□ -1.39
USP44-201ENST00000258499 TOPBP1Q92547 1522 aa6.34□□□□□ -1.39
USP44-201ENST00000258499 CC2D1BQ5T0F9 858 aaKnown RBP6.34□□□□□ -1.39
USP44-201ENST00000258499 MAP3K1Q13233 1512 aa6.34□□□□□ -1.39
USP44-201ENST00000258499 ZBED9Q6R2W3 1325 aa6.33□□□□□ -1.4
USP44-201ENST00000258499 AQRO60306 1485 aaKnown RBP eCLIP6.33□□□□□ -1.4
USP44-201ENST00000258499 NUP155O75694 1391 aa6.33□□□□□ -1.4
USP44-201ENST00000258499 CNTLNQ9NXG0 1405 aa6.33□□□□□ -1.4
USP44-201ENST00000258499 ERICH6BQ5W0A0 696 aa6.33□□□□□ -1.4
USP44-201ENST00000258499 NUDCQ9Y266 331 aa6.33□□□□□ -1.4
USP44-201ENST00000258499 ST20-MTHFSA0A0A6YYL1 179 aa6.32□□□□□ -1.4
USP44-201ENST00000258499 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.32□□□□□ -1.4
USP44-201ENST00000258499 LAS1LQ9Y4W2 734 aaKnown RBP6.32□□□□□ -1.4
USP44-201ENST00000258499 DEKP35659 375 aaKnown RBP6.32□□□□□ -1.4
USP44-201ENST00000258499 USP47Q96K76 1375 aa6.31□□□□□ -1.4
USP44-201ENST00000258499 EFCAB5A4FU69 1503 aa6.31□□□□□ -1.4
USP44-201ENST00000258499 FANCIQ9NVI1 1328 aa6.31□□□□□ -1.4
USP44-201ENST00000258499 ABCA10Q8WWZ4 1543 aa6.31□□□□□ -1.4
USP44-201ENST00000258499 HNRNPMP52272 730 aaKnown RBP eCLIP6.31□□□□□ -1.4
USP44-201ENST00000258499 PLPPR3Q6T4P5 718 aa6.3□□□□□ -1.4
USP44-201ENST00000258499 CC2D2AQ9P2K1 1620 aa6.3□□□□□ -1.4
USP44-201ENST00000258499 WDR43Q15061 677 aaKnown RBP eCLIP6.29□□□□□ -1.4
USP44-201ENST00000258499 CANXP27824 592 aaKnown RBP6.29□□□□□ -1.4
USP44-201ENST00000258499 AKNAQ7Z591 1439 aa6.29□□□□□ -1.4
USP44-201ENST00000258499 RCAN3Q9UKA8 241 aa6.29□□□□□ -1.4
USP44-201ENST00000258499 CDK13Q14004 1512 aaKnown RBP6.29□□□□□ -1.4
USP44-201ENST00000258499 ANKRD30AQ9BXX3 1397 aa6.29□□□□□ -1.4
USP44-201ENST00000258499 ROCK2O75116 1388 aaKnown RBP6.28□□□□□ -1.4
USP44-201ENST00000258499 DNMBPQ6XZF7 1577 aa6.28□□□□□ -1.4
USP44-201ENST00000258499 PLIN1O60240 522 aa6.28□□□□□ -1.4
USP44-201ENST00000258499 CHGAP10645 457 aaKnown RBP6.28□□□□□ -1.4
USP44-201ENST00000258499 EXOC6Q8TAG9 804 aa6.28□□□□□ -1.4
USP44-201ENST00000258499 JPH4Q96JJ6 628 aa6.28□□□□□ -1.4
USP44-201ENST00000258499 PTPN23Q9H3S7 1636 aa6.27□□□□□ -1.41
USP44-201ENST00000258499 PAK3O75914 559 aaPredicted RBP6.27□□□□□ -1.41
USP44-201ENST00000258499 EHBP1L1Q8N3D4 1523 aa6.27□□□□□ -1.41
USP44-201ENST00000258499 RTN4Q9NQC3 1192 aaKnown RBP6.27□□□□□ -1.41
USP44-201ENST00000258499 NEFMP07197 916 aa6.26□□□□□ -1.41
USP44-201ENST00000258499 KNSTRNQ9Y448 316 aa6.26□□□□□ -1.41
USP44-201ENST00000258499 ANKRD30BQ9BXX2 1392 aa6.26□□□□□ -1.41
USP44-201ENST00000258499 RGS3P49796 1198 aa6.26□□□□□ -1.41
USP44-201ENST00000258499 IPO9Q96P70 1041 aaKnown RBP6.26□□□□□ -1.41
USP44-201ENST00000258499 RALBP1Q15311 655 aa6.26□□□□□ -1.41
USP44-201ENST00000258499 NLRP13Q86W25 1043 aa6.26□□□□□ -1.41
USP44-201ENST00000258499 EPRSP07814 1512 aaKnown RBP6.26□□□□□ -1.41
USP44-201ENST00000258499 KTN1Q86UP2 1357 aaKnown RBP6.25□□□□□ -1.41
USP44-201ENST00000258499 URB2Q14146 1524 aaKnown RBP6.25□□□□□ -1.41
USP44-201ENST00000258499 PRG4Q92954 1404 aaPredicted RBP6.25□□□□□ -1.41
USP44-201ENST00000258499 PNISRQ8TF01 805 aaKnown RBP6.25□□□□□ -1.41
USP44-201ENST00000258499 SNAPC4Q5SXM2 1469 aa6.25□□□□□ -1.41
USP44-201ENST00000258499 MYBBP1AQ9BQG0 1328 aaKnown RBP6.25□□□□□ -1.41
USP44-201ENST00000258499 KIF15Q9NS87 1388 aa6.24□□□□□ -1.41
USP44-201ENST00000258499 SUPT6HQ7KZ85 1726 aaKnown RBP6.24□□□□□ -1.41
USP44-201ENST00000258499 DAPK1P53355 1430 aa6.24□□□□□ -1.41
USP44-201ENST00000258499 RRP1P56182 461 aaKnown RBP6.24□□□□□ -1.41
USP44-201ENST00000258499 NEUROD2Q15784 382 aa6.24□□□□□ -1.41
USP44-201ENST00000258499 CDCA7LQ96GN5 454 aa6.24□□□□□ -1.41
USP44-201ENST00000258499 ERCC6Q03468 1493 aa6.24□□□□□ -1.41
USP44-201ENST00000258499 NCOA1Q15788 1441 aa6.24□□□□□ -1.41
USP44-201ENST00000258499 MIA2Q96PC5 1412 aa6.24□□□□□ -1.41
USP44-201ENST00000258499 TMF1P82094 1093 aa6.24□□□□□ -1.41
USP44-201ENST00000258499 PANK3Q9H999 370 aa6.24□□□□□ -1.41
USP44-201ENST00000258499 ANKRD50Q9ULJ7 1429 aa6.24□□□□□ -1.41
USP44-201ENST00000258499 TNNT2P45379 298 aaPredicted RBP6.23□□□□□ -1.41
USP44-201ENST00000258499 GRIN2BQ13224 1484 aa6.23□□□□□ -1.41
USP44-201ENST00000258499 NBPF1Q3BBV0 1214 aa6.23□□□□□ -1.41
USP44-201ENST00000258499 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.23□□□□□ -1.41
USP44-201ENST00000258499 ABCC5O15440 1437 aa6.23□□□□□ -1.41
USP44-201ENST00000258499 CARMIL2Q6F5E8 1435 aa6.23□□□□□ -1.41
USP44-201ENST00000258499 PRDM2Q13029 1718 aa6.23□□□□□ -1.41
USP44-201ENST00000258499 CFAP43Q8NDM7 1665 aa6.22□□□□□ -1.41
USP44-201ENST00000258499 PDE4AP27815 886 aa6.22□□□□□ -1.41
USP44-201ENST00000258499 ARXQ96QS3 562 aa6.22□□□□□ -1.41
USP44-201ENST00000258499 TCERG1O14776 1098 aaKnown RBP6.22□□□□□ -1.41
USP44-201ENST00000258499 SKAP1Q86WV1 359 aa6.22□□□□□ -1.41
USP44-201ENST00000258499 SLC4A3P48751 1232 aa6.22□□□□□ -1.41
USP44-201ENST00000258499 CCDC146Q8IYE0 955 aa6.22□□□□□ -1.41
USP44-201ENST00000258499 CUL7Q14999 1698 aa6.21□□□□□ -1.41
USP44-201ENST00000258499 CRBNQ96SW2 442 aa6.21□□□□□ -1.42
USP44-201ENST00000258499 RPRD2Q5VT52 1461 aaKnown RBP6.21□□□□□ -1.42
USP44-201ENST00000258499 KIAA1107Q9UPP5 1409 aa6.21□□□□□ -1.42
USP44-201ENST00000258499 HOXD11P31277 338 aaPredicted RBP6.21□□□□□ -1.42
USP44-201ENST00000258499 UGGT2Q9NYU1 1516 aa6.21□□□□□ -1.42
USP44-201ENST00000258499 THOC2Q8NI27 1593 aaKnown RBP6.2□□□□□ -1.42
USP44-201ENST00000258499 FRAT1Q92837 279 aaPredicted RBP6.2□□□□□ -1.42
USP44-201ENST00000258499 CCDC144AA2RUR9 1427 aa6.2□□□□□ -1.42
USP44-201ENST00000258499 HECW1Q76N89 1606 aa6.2□□□□□ -1.42
USP44-201ENST00000258499 SMG6Q86US8 1419 aaKnown RBP6.2□□□□□ -1.42
USP44-201ENST00000258499 DDRGK1Q96HY6 314 aa6.2□□□□□ -1.42
USP44-201ENST00000258499 ROCK1Q13464 1354 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms