RNA–Protein interactions for RNA: ENST00000258499.7

USP44-201, Transcript of ubiquitin specific peptidase 44, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP44, Length 4,022 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP44-201ENST00000258499 AEBP2Q6ZN18 517 aaPredicted RBP9.7□□□□□ -0.86
USP44-201ENST00000258499 CHIC1Q5VXU3 224 aa9.03□□□□□ -0.96
USP44-201ENST00000258499 POTEDQ86YR6 584 aa8.98□□□□□ -0.97
USP44-201ENST00000258499 NISCHQ9Y2I1 1504 aa8.98□□□□□ -0.97
USP44-201ENST00000258499 SENP3Q9H4L4 574 aaPredicted RBP8.45□□□□□ -1.06
USP44-201ENST00000258499 SHROOM4Q9ULL8 1493 aa8.23□□□□□ -1.09
USP44-201ENST00000258499 SUPT5HO00267 1087 aaKnown RBP8.19□□□□□ -1.1
USP44-201ENST00000258499 DCAF8L2P0C7V8 631 aa8.19□□□□□ -1.1
USP44-201ENST00000258499 PHF23Q9BUL5 403 aaPredicted RBP8.07□□□□□ -1.12
USP44-201ENST00000258499 FOXD1Q16676 465 aa7.9□□□□□ -1.14
USP44-201ENST00000258499 MSH5O43196 834 aa7.86□□□□□ -1.15
USP44-201ENST00000258499 PCGF6Q9BYE7 350 aa7.81□□□□□ -1.16
USP44-201ENST00000258499 EHMT2Q96KQ7 1210 aa7.74□□□□□ -1.17
USP44-201ENST00000258499 HRCP23327 699 aa7.66□□□□□ -1.18
USP44-201ENST00000258499 LOC105371045A0A1W2PR82 267 aa7.65□□□□□ -1.18
USP44-201ENST00000258499 FAM9AQ8IZU1 332 aaPredicted RBP7.65□□□□□ -1.18
USP44-201ENST00000258499 PPARGC1BQ86YN6 1023 aaKnown RBP7.62□□□□□ -1.19
USP44-201ENST00000258499 ZCCHC6Q5VYS8 1495 aaKnown RBP7.55□□□□□ -1.2
USP44-201ENST00000258499 TRIM41Q8WV44 630 aa7.54□□□□□ -1.2
USP44-201ENST00000258499 MYO15BQ96JP2 1530 aa7.53□□□□□ -1.2
USP44-201ENST00000258499 TRIM26Q12899 539 aaPredicted RBP7.49□□□□□ -1.21
USP44-201ENST00000258499 TTBK1Q5TCY1 1321 aaPredicted RBP7.48□□□□□ -1.21
USP44-201ENST00000258499 ZEB1P37275 1124 aaPredicted RBP7.38□□□□□ -1.23
USP44-201ENST00000258499 CCER1Q8TC90 406 aaPredicted RBP7.36□□□□□ -1.23
USP44-201ENST00000258499 CCDC180Q9P1Z9 1646 aa7.35□□□□□ -1.23
USP44-201ENST00000258499 DCAF1Q9Y4B6 1507 aa7.32□□□□□ -1.24
USP44-201ENST00000258499 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.3□□□□□ -1.24
USP44-201ENST00000258499 RANGAP1P46060 587 aaPredicted RBP7.29□□□□□ -1.24
USP44-201ENST00000258499 UBTFP17480 764 aaKnown RBP7.28□□□□□ -1.24
USP44-201ENST00000258499 ABCC9O60706 1549 aa7.26□□□□□ -1.25
USP44-201ENST00000258499 SCRIBQ14160 1630 aa7.25□□□□□ -1.25
USP44-201ENST00000258499 RSF1Q96T23 1441 aaPredicted RBP7.23□□□□□ -1.25
USP44-201ENST00000258499 APLP2Q06481 763 aa7.2□□□□□ -1.26
USP44-201ENST00000258499 YTHDC1Q96MU7 727 aaKnown RBP7.2□□□□□ -1.26
USP44-201ENST00000258499 CENPBP07199 599 aaPredicted RBP7.19□□□□□ -1.26
USP44-201ENST00000258499 HNRNPUL2Q1KMD3 747 aaKnown RBP7.17□□□□□ -1.26
USP44-201ENST00000258499 DIEXFQ68CQ4 756 aaKnown RBP7.16□□□□□ -1.26
USP44-201ENST00000258499 PELP1Q8IZL8 1130 aaKnown RBP7.15□□□□□ -1.27
USP44-201ENST00000258499 PABPN1Q86U42 306 aaKnown RBP eCLIP7.13□□□□□ -1.27
USP44-201ENST00000258499 SCAF1Q9H7N4 1312 aaKnown RBP7.13□□□□□ -1.27
USP44-201ENST00000258499 CECR2Q9BXF3 1484 aa7.11□□□□□ -1.27
USP44-201ENST00000258499 RB1CC1Q8TDY2 1594 aa7.11□□□□□ -1.27
USP44-201ENST00000258499 GTF3C3Q9Y5Q9 886 aa7.09□□□□□ -1.27
USP44-201ENST00000258499 ACIN1Q9UKV3 1341 aaKnown RBP7.07□□□□□ -1.28
USP44-201ENST00000258499 CSRNP3Q8WYN3 585 aa7.07□□□□□ -1.28
USP44-201ENST00000258499 NEUROD1Q13562 356 aa7.07□□□□□ -1.28
USP44-201ENST00000258499 ITGAEP38570 1179 aa7.04□□□□□ -1.28
USP44-201ENST00000258499 MROH2BQ7Z745 1585 aa7.03□□□□□ -1.28
USP44-201ENST00000258499 ZNF316A6NFI3 1004 aaPredicted RBP7.02□□□□□ -1.29
USP44-201ENST00000258499 ATP1B4Q9UN42 357 aaPredicted RBP7.01□□□□□ -1.29
USP44-201ENST00000258499 CEP162Q5TB80 1403 aa6.99□□□□□ -1.29
USP44-201ENST00000258499 SOGA1O94964 1423 aa6.97□□□□□ -1.29
USP44-201ENST00000258499 NACADO15069 1562 aa6.96□□□□□ -1.3
USP44-201ENST00000258499 WIZO95785 1651 aa6.95□□□□□ -1.3
USP44-201ENST00000258499 CCDC88BA6NC98 1476 aa6.95□□□□□ -1.3
USP44-201ENST00000258499 ABCC8Q09428 1581 aa6.95□□□□□ -1.3
USP44-201ENST00000258499 MIER1Q8N108 512 aa6.94□□□□□ -1.3
USP44-201ENST00000258499 PIAS4Q8N2W9 510 aaPredicted RBP6.94□□□□□ -1.3
USP44-201ENST00000258499 TNIKQ9UKE5 1360 aa6.92□□□□□ -1.3
USP44-201ENST00000258499 BAZ1AQ9NRL2 1556 aaPredicted RBP6.91□□□□□ -1.3
USP44-201ENST00000258499 CLIP1P30622 1438 aa6.89□□□□□ -1.31
USP44-201ENST00000258499 WRNQ14191 1432 aaPredicted RBP eCLIP6.88□□□□□ -1.31
USP44-201ENST00000258499 RUSC2Q8N2Y8 1516 aa6.88□□□□□ -1.31
USP44-201ENST00000258499 GOLGA3Q08378 1498 aa6.88□□□□□ -1.31
USP44-201ENST00000258499 FAM50AQ14320 339 aaKnown RBP6.86□□□□□ -1.31
USP44-201ENST00000258499 CACNB1Q02641 598 aaPredicted RBP6.86□□□□□ -1.31
USP44-201ENST00000258499 EEA1Q15075 1411 aa6.86□□□□□ -1.31
USP44-201ENST00000258499 P3H3Q8IVL6 736 aa6.85□□□□□ -1.31
USP44-201ENST00000258499 BCANQ96GW7 911 aa6.85□□□□□ -1.31
USP44-201ENST00000258499 NEFLP07196 543 aa6.82□□□□□ -1.32
USP44-201ENST00000258499 CEP164Q9UPV0 1460 aa6.82□□□□□ -1.32
USP44-201ENST00000258499 TOP2AP11388 1531 aaKnown RBP6.81□□□□□ -1.32
USP44-201ENST00000258499 MYT1Q01538 1121 aa6.81□□□□□ -1.32
USP44-201ENST00000258499 KANK4Q5T7N3 995 aaPredicted RBP6.79□□□□□ -1.32
USP44-201ENST00000258499 HIRIP3Q9BW71 556 aaPredicted RBP6.79□□□□□ -1.32
USP44-201ENST00000258499 POTEHQ6S545 545 aa6.78□□□□□ -1.32
USP44-201ENST00000258499 DDX10Q13206 875 aaKnown RBP6.78□□□□□ -1.32
USP44-201ENST00000258499 VPS8Q8N3P4 1428 aa6.78□□□□□ -1.32
USP44-201ENST00000258499 BAZ1BQ9UIG0 1483 aaKnown RBP6.77□□□□□ -1.33
USP44-201ENST00000258499 SMARCA4P51532 1647 aa6.77□□□□□ -1.33
USP44-201ENST00000258499 SMARCA2P51531 1590 aa6.77□□□□□ -1.33
USP44-201ENST00000258499 CNGB1Q14028 1251 aaPredicted RBP6.77□□□□□ -1.33
USP44-201ENST00000258499 RAPGEF2Q9Y4G8 1499 aa6.76□□□□□ -1.33
USP44-201ENST00000258499 FKBP8Q14318 412 aa6.73□□□□□ -1.33
USP44-201ENST00000258499 TRIM52Q96A61 297 aa6.73□□□□□ -1.33
USP44-201ENST00000258499 SIN3AQ96ST3 1273 aa6.73□□□□□ -1.33
USP44-201ENST00000258499 ANP32CO43423 234 aa6.72□□□□□ -1.33
USP44-201ENST00000258499 ARID3CA6NKF2 412 aa6.72□□□□□ -1.33
USP44-201ENST00000258499 POLR3GLQ9BT43 218 aa6.72□□□□□ -1.33
USP44-201ENST00000258499 SUPT16HQ9Y5B9 1047 aaKnown RBP6.71□□□□□ -1.34
USP44-201ENST00000258499 ERICH6Q7L0X2 663 aa6.7□□□□□ -1.34
USP44-201ENST00000258499 KIF27Q86VH2 1401 aa6.7□□□□□ -1.34
USP44-201ENST00000258499 CCNB3Q8WWL7 1395 aa6.7□□□□□ -1.34
USP44-201ENST00000258499 KCNH8Q96L42 1107 aa6.69□□□□□ -1.34
USP44-201ENST00000258499 ATAD2BQ9ULI0 1458 aa6.69□□□□□ -1.34
USP44-201ENST00000258499 DHX57Q6P158 1386 aaKnown RBP6.69□□□□□ -1.34
USP44-201ENST00000258499 CLSPNQ9HAW4 1339 aa6.69□□□□□ -1.34
USP44-201ENST00000258499 DMRT2Q9Y5R5 561 aa6.68□□□□□ -1.34
USP44-201ENST00000258499 SYNJ1O43426 1573 aa6.66□□□□□ -1.34
USP44-201ENST00000258499 CHIC2Q9UKJ5 165 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms