RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeastyeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS35YJL154C HOS2P53096 452 aaPredicted RBP2.17□□□□□ -2.06
VPS35YJL154C SOL4P53315 255 aa2.17□□□□□ -2.06
VPS35YJL154C SEC5P89102 971 aa2.17□□□□□ -2.06
VPS35YJL154C PDS5Q04264 1277 aa2.17□□□□□ -2.06
VPS35YJL154C PDR12Q02785 1511 aa2.17□□□□□ -2.06
VPS35YJL154C RPL42AP0CX27 106 aaKnown RBP2.16□□□□□ -2.06
VPS35YJL154C RPL42BP0CX28 106 aaKnown RBP2.16□□□□□ -2.06
VPS35YJL154C CUP1-1P0CX80 61 aa2.16□□□□□ -2.06
VPS35YJL154C CUP1-2P0CX81 61 aa2.16□□□□□ -2.06
VPS35YJL154C SNC1P31109 117 aa2.16□□□□□ -2.06
VPS35YJL154C TIF3P34167 436 aaKnown RBP2.16□□□□□ -2.06
VPS35YJL154C CMC1P36064 111 aa2.16□□□□□ -2.06
VPS35YJL154C YPK3P38070 525 aa2.16□□□□□ -2.06
VPS35YJL154C HXT14P42833 540 aa2.16□□□□□ -2.06
VPS35YJL154C EAF7P53911 425 aaKnown RBP2.16□□□□□ -2.06
VPS35YJL154C TOF2Q02208 771 aa2.16□□□□□ -2.06
VPS35YJL154C TAF11Q04226 346 aa2.16□□□□□ -2.06
VPS35YJL154C RAV1P47104 1357 aa2.16□□□□□ -2.06
VPS35YJL154C TY3B-GQ99315 1547 aa2.16□□□□□ -2.06
VPS35YJL154C BCK1Q01389 1478 aa2.16□□□□□ -2.06
VPS35YJL154C RPL3P14126 387 aaKnown RBP2.16□□□□□ -2.06
VPS35YJL154C ROX1P25042 368 aa2.16□□□□□ -2.06
VPS35YJL154C MIC60P36112 540 aa2.16□□□□□ -2.06
VPS35YJL154C YEL057CP39983 233 aa2.16□□□□□ -2.06
VPS35YJL154C MET18P40469 1032 aa2.16□□□□□ -2.06
VPS35YJL154C MET28P40573 187 aa2.16□□□□□ -2.06
VPS35YJL154C ROK1P45818 564 aaPredicted RBP2.16□□□□□ -2.06
VPS35YJL154C APT1P49435 187 aaKnown RBP2.16□□□□□ -2.06
VPS35YJL154C YMR155WQ03795 547 aa2.16□□□□□ -2.06
VPS35YJL154C GLO2Q05584 274 aa2.16□□□□□ -2.06
VPS35YJL154C ADE13Q05911 482 aaKnown RBP2.16□□□□□ -2.06
VPS35YJL154C THP1Q08231 455 aa2.16□□□□□ -2.06
VPS35YJL154C HIF1Q12373 385 aa2.16□□□□□ -2.06
VPS35YJL154C SEC39Q12745 709 aa2.16□□□□□ -2.06
VPS35YJL154C BRR1Q99177 341 aaPredicted RBP2.16□□□□□ -2.06
VPS35YJL154C SKI3P17883 1432 aaKnown RBP2.16□□□□□ -2.06
VPS35YJL154C TY2B-BQ12491 1770 aa2.16□□□□□ -2.06
VPS35YJL154C YRF1-4O13559 1382 aa2.16□□□□□ -2.06
VPS35YJL154C AIM17P23180 465 aaKnown RBP2.15□□□□□ -2.06
VPS35YJL154C TRS65P32893 560 aa2.15□□□□□ -2.06
VPS35YJL154C UBA4P38820 440 aa2.15□□□□□ -2.06
VPS35YJL154C EKI1Q03764 534 aa2.15□□□□□ -2.06
VPS35YJL154C SNA4Q07549 140 aa2.15□□□□□ -2.06
VPS35YJL154C RPS10AQ08745 105 aaPredicted RBP2.15□□□□□ -2.06
VPS35YJL154C GID7P25569 745 aa2.15□□□□□ -2.07
VPS35YJL154C SYN8P31377 255 aa2.15□□□□□ -2.07
VPS35YJL154C WBP1P33767 430 aaKnown RBP2.15□□□□□ -2.07
VPS35YJL154C PMT1P33775 817 aa2.15□□□□□ -2.07
VPS35YJL154C SHP1P34223 423 aa2.15□□□□□ -2.07
VPS35YJL154C ASK1P35734 292 aa2.15□□□□□ -2.07
VPS35YJL154C PHD1P36093 366 aa2.15□□□□□ -2.07
VPS35YJL154C ERG7P38604 731 aa2.15□□□□□ -2.07
VPS35YJL154C SMF1P38925 575 aa2.15□□□□□ -2.07
VPS35YJL154C PHO90P39535 881 aa2.15□□□□□ -2.07
VPS35YJL154C AXL1P40851 1208 aa2.15□□□□□ -2.07
VPS35YJL154C RTS2P40962 232 aa2.15□□□□□ -2.07
VPS35YJL154C SAD1P43589 448 aa2.15□□□□□ -2.07
VPS35YJL154C CUL3P53202 744 aa2.15□□□□□ -2.07
VPS35YJL154C YLR352WQ06479 807 aa2.15□□□□□ -2.07
VPS35YJL154C RGT2Q12300 763 aa2.15□□□□□ -2.07
VPS35YJL154C ISA2Q12425 185 aa2.15□□□□□ -2.07
VPS35YJL154C STU1P38198 1513 aa2.15□□□□□ -2.07
VPS35YJL154C SPP41P38904 1435 aa2.14□□□□□ -2.07
VPS35YJL154C PEP5P12868 1029 aa2.14□□□□□ -2.07
VPS35YJL154C PRD1P25375 712 aa2.14□□□□□ -2.07
VPS35YJL154C MRE11P32829 692 aa2.14□□□□□ -2.07
VPS35YJL154C REC114P32841 428 aa2.14□□□□□ -2.07
VPS35YJL154C STB2P46679 850 aa2.14□□□□□ -2.07
VPS35YJL154C OGG1P53397 376 aaPredicted RBP2.14□□□□□ -2.07
VPS35YJL154C YPL014WQ02606 381 aa2.14□□□□□ -2.07
VPS35YJL154C GIR2Q03768 265 aaPredicted RBP2.14□□□□□ -2.07
VPS35YJL154C RSF1Q05043 376 aa2.14□□□□□ -2.07
VPS35YJL154C YLR281CQ05863 155 aa2.14□□□□□ -2.07
VPS35YJL154C MRD1Q06106 887 aaKnown RBP2.14□□□□□ -2.07
VPS35YJL154C YPL272CQ08984 517 aa2.14□□□□□ -2.07
VPS35YJL154C ARP6Q12509 438 aa2.14□□□□□ -2.07
VPS35YJL154C IML1P47170 1584 aa2.14□□□□□ -2.07
VPS35YJL154C CLC1P17891 233 aa2.14□□□□□ -2.07
VPS35YJL154C HNM1P19807 563 aa2.14□□□□□ -2.07
VPS35YJL154C MGR1P25573 417 aa2.14□□□□□ -2.07
VPS35YJL154C ECM32P32644 1121 aaKnown RBP2.14□□□□□ -2.07
VPS35YJL154C BNA4P38169 460 aa2.14□□□□□ -2.07
VPS35YJL154C SRP72P38688 640 aaKnown RBP2.14□□□□□ -2.07
VPS35YJL154C GND1P38720 489 aaKnown RBP2.14□□□□□ -2.07
VPS35YJL154C HXT9P40885 567 aa2.14□□□□□ -2.07
VPS35YJL154C POP1P41812 875 aa2.14□□□□□ -2.07
VPS35YJL154C GAT1P43574 510 aa2.14□□□□□ -2.07
VPS35YJL154C RPL15BP54780 204 aaPredicted RBP2.14□□□□□ -2.07
VPS35YJL154C YDL007C-AQ2V2Q0 85 aa2.14□□□□□ -2.07
VPS35YJL154C COR1P07256 457 aa2.13□□□□□ -2.07
VPS35YJL154C RPL31BP0C2H9 113 aaKnown RBP2.13□□□□□ -2.07
VPS35YJL154C YER190C-BP0CX94 160 aa2.13□□□□□ -2.07
VPS35YJL154C YEL077W-AP0CX95 160 aa2.13□□□□□ -2.07
VPS35YJL154C YGR296C-BP0CX96 160 aa2.13□□□□□ -2.07
VPS35YJL154C YPL283W-BP0CX97 160 aa2.13□□□□□ -2.07
VPS35YJL154C YPR204C-AP0CX98 160 aa2.13□□□□□ -2.07
VPS35YJL154C AFG1P32317 509 aa2.13□□□□□ -2.07
VPS35YJL154C TFB1P32776 642 aa2.13□□□□□ -2.07
VPS35YJL154C NFU1P32860 256 aa2.13□□□□□ -2.07
VPS35YJL154C ATO2P32907 282 aa2.13□□□□□ -2.07
Retrieved 100 of 5,963 RNA–protein pairs in 11.9 ms