RNA–Protein interactions for RNA: YLR399C

BDF1, Transcript of Protein involved in transcription initiation, yeast

Gene BDF1, Length 2,061 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BDF1	YLR399C	ATP1	P07251	545 aa	Known RBP	12.12	□□□□□ -0.47
BDF1	YLR399C	RPL4A	P10664	362 aa	Known RBP	12.12	□□□□□ -0.47
BDF1	YLR399C	ATG22	P25568	528 aa		12.12	□□□□□ -0.47
BDF1	YLR399C	LRG1	P35688	1017 aa		12.12	□□□□□ -0.47
BDF1	YLR399C	ABZ1	P37254	787 aa	Predicted RBP	12.12	□□□□□ -0.47
BDF1	YLR399C	YMC2	P38087	329 aa		12.12	□□□□□ -0.47
BDF1	YLR399C	XDJ1	P39102	459 aa		12.12	□□□□□ -0.47
BDF1	YLR399C	RPL4B	P49626	362 aa	Known RBP	12.12	□□□□□ -0.47
BDF1	YLR399C	RSC4	Q02206	625 aa		12.12	□□□□□ -0.47
BDF1	YLR399C	CRN1	Q06440	651 aa		12.12	□□□□□ -0.47
BDF1	YLR399C	HRK1	Q08732	759 aa	Known RBP	12.12	□□□□□ -0.47
BDF1	YLR399C	SRP68	P38687	599 aa	Known RBP	12.11	□□□□□ -0.47
BDF1	YLR399C	LEU5	P38702	357 aa		12.11	□□□□□ -0.47
BDF1	YLR399C	YEN1	P40028	759 aa		12.11	□□□□□ -0.47
BDF1	YLR399C	ALD5	P40047	520 aa	Known RBP	12.11	□□□□□ -0.47
BDF1	YLR399C	COA1	P40452	197 aa		12.11	□□□□□ -0.47
BDF1	YLR399C	SEC28	P40509	296 aa	Known RBP	12.11	□□□□□ -0.47
BDF1	YLR399C	IRC18	P47056	224 aa		12.11	□□□□□ -0.47
BDF1	YLR399C	COG1	P53079	417 aa		12.11	□□□□□ -0.47
BDF1	YLR399C	ALG11	P53954	548 aa	Known RBP	12.11	□□□□□ -0.47
BDF1	YLR399C	RSM28	Q03430	361 aa		12.11	□□□□□ -0.47
BDF1	YLR399C	ARX1	Q03862	593 aa	Known RBP	12.11	□□□□□ -0.47
BDF1	YLR399C	BUD20	Q08004	166 aa	Predicted RBP	12.11	□□□□□ -0.47
BDF1	YLR399C	ASP3-2	P0CX77	362 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	ASP3-3	P0CX78	362 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	ASP3-4	P0CX79	362 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	ASP3-1	P0CZ17	362 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	TGL1	P34163	548 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	VRP1	P37370	817 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	AHP1	P38013	176 aa	Known RBP	12.1	□□□□□ -0.47
BDF1	YLR399C	YHR131C	P38835	850 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	12.1	□□□□□ -0.47	not detected
BDF1	YLR399C	EAF5	P39995	279 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	PHM8	P40025	321 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	MTC3	P53077	123 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	NCS6	P53088	359 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	VAC7	P53950	1165 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	NUP49	Q02199	472 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	UBX3	Q12229	455 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	COS2	P0CX12	379 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	COS3	P0CX13	379 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	GLN4	P13188	809 aa	Known RBP	12.1	□□□□□ -0.47
BDF1	YLR399C	RHB1	P25378	209 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	NOP4	P37838	685 aa	Known RBP	12.1	□□□□□ -0.47
BDF1	YLR399C	YAR028W	P39548	234 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	TPN1	P53099	579 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	PRP38	Q00723	242 aa	Predicted RBP	12.1	□□□□□ -0.47
BDF1	YLR399C	DUS3	Q06053	668 aa	Known RBP	12.1	□□□□□ -0.47
BDF1	YLR399C	DXO1	Q06349	442 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	SUB2	Q07478	446 aa	Known RBP	12.1	□□□□□ -0.47
BDF1	YLR399C	MDM32	Q12171	622 aa		12.1	□□□□□ -0.47
BDF1	YLR399C	PET494	P07390	489 aa	Predicted RBP	12.09	□□□□□ -0.47
BDF1	YLR399C	PEX1	P24004	1043 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	VBA3	P25594	458 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	VBA5	P36172	582 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	KTR4	P38131	464 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	FMP23	P38231	175 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	SDH8	P38345	138 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	ALR2	P43553	858 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	MNN5	P46982	586 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	YNR068C	P53754	272 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	CEG1	Q01159	459 aa	Predicted RBP	12.09	□□□□□ -0.47
BDF1	YLR399C	SMA1	Q02651	245 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	PST2	Q12335	198 aa	Known RBP	12.09	□□□□□ -0.47
BDF1	YLR399C	RIB3	Q99258	208 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	THI4	P32318	326 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	MRPL6	P32904	214 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	ATM1	P40416	690 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	UPF3	P48412	387 aa	Known RBP	12.09	□□□□□ -0.47
BDF1	YLR399C	RPS12	P48589	143 aa	Known RBP	12.09	□□□□□ -0.47
BDF1	YLR399C	GTR2	P53290	341 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	REG1	Q00816	1014 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	BSC2	Q05611	235 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	SYT1	Q06836	1226 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	YDR061W	Q12298	539 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	RPN6	Q12377	434 aa		12.09	□□□□□ -0.47
BDF1	YLR399C	LSO2	Q3E772	92 aa	Known RBP	12.09	□□□□□ -0.47
BDF1	YLR399C	EMC1	P25574	760 aa		12.08	□□□□□ -0.48
BDF1	YLR399C	RNP1	P32385	249 aa		12.08	□□□□□ -0.48
BDF1	YLR399C	STE14	P32584	239 aa		12.08	□□□□□ -0.48
BDF1	YLR399C	BIT2	P38346	545 aa		12.08	□□□□□ -0.48
BDF1	YLR399C	KEL1	P38853	1164 aa	Known RBP	12.08	□□□□□ -0.48
BDF1	YLR399C	GCD14	P46959	383 aa	Predicted RBP	12.08	□□□□□ -0.48
BDF1	YLR399C	ALT2	P52892	507 aa		12.08	□□□□□ -0.48
BDF1	YLR399C	MRH4	P53166	561 aa		12.08	□□□□□ -0.48
BDF1	YLR399C	PEX13	P80667	386 aa		12.08	□□□□□ -0.48
BDF1	YLR399C	PDR8	Q06149	701 aa		12.08	□□□□□ -0.48
BDF1	YLR399C	TFB4	Q12004	338 aa		12.08	□□□□□ -0.48
BDF1	YLR399C	APC2	Q12440	853 aa		12.08	□□□□□ -0.48
BDF1	YLR399C	ZPS1	Q12512	249 aa		12.08	□□□□□ -0.48
BDF1	YLR399C	UBR1	P19812	1950 aa		12.08	□□□□□ -0.48
BDF1	YLR399C	CDC5	P32562	705 aa		12.07	□□□□□ -0.48
BDF1	YLR399C	SDH3	P33421	198 aa		12.07	□□□□□ -0.48
BDF1	YLR399C	ZRT3	P34240	503 aa		12.07	□□□□□ -0.48
BDF1	YLR399C	DDI1	P40087	428 aa		12.07	□□□□□ -0.48
BDF1	YLR399C	COG3	P40094	801 aa		12.07	□□□□□ -0.48
BDF1	YLR399C	DAM1	P53267	343 aa		12.07	□□□□□ -0.48
BDF1	YLR399C	YAT1	P80235	687 aa		12.07	□□□□□ -0.48
BDF1	YLR399C	SEG1	Q04279	960 aa		12.07	□□□□□ -0.48
BDF1	YLR399C	MLC2	Q06580	163 aa		12.07	□□□□□ -0.48

Retrieved 100 of 5,963 RNA–protein pairs in 105.7 ms