RNA–Protein interactions for RNA: YMR153W

NUP53, Transcript of FG-nucleoporin component of central core of nuclear pore complex (NPC), yeast

Gene NUP53, Length 1,428 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP53	YMR153W	YHI9	P38765	294 aa		7.53	□□□□□ -1.2
NUP53	YMR153W	YHR182W	P38870	785 aa		7.53	□□□□□ -1.2
NUP53	YMR153W	CFD1	P40558	293 aa		7.53	□□□□□ -1.2
NUP53	YMR153W	ALA1	P40825	983 aa	Known RBP	7.53	□□□□□ -1.2
NUP53	YMR153W	SAE2	P46946	345 aa		7.53	□□□□□ -1.2
NUP53	YMR153W	ARE2	P53629	642 aa	Known RBP	7.53	□□□□□ -1.2
NUP53	YMR153W	ROT1	Q03691	256 aa		7.53	□□□□□ -1.2
NUP53	YMR153W	SSL1	Q04673	461 aa	Predicted RBP	7.53	□□□□□ -1.2
NUP53	YMR153W	GRS2	Q06817	618 aa		7.53	□□□□□ -1.2
NUP53	YMR153W	GPA2	P10823	449 aa		7.52	□□□□□ -1.2
NUP53	YMR153W	PHO3	P24031	467 aa		7.52	□□□□□ -1.2
NUP53	YMR153W	EMC3	P36039	253 aa		7.52	□□□□□ -1.2
NUP53	YMR153W	MRPL37	P36532	105 aa		7.52	□□□□□ -1.2
NUP53	YMR153W	YHR045W	P38775	560 aa		7.52	□□□□□ -1.2
NUP53	YMR153W	LYS1	P38998	373 aa	RIP-Chip data	7.52	□□□□□ -1.2	not detected
NUP53	YMR153W	ATG23	Q06671	453 aa		7.52	□□□□□ -1.2
NUP53	YMR153W	SEC39	Q12745	709 aa		7.52	□□□□□ -1.2
NUP53	YMR153W	FUM1	P08417	488 aa	Known RBP	7.52	□□□□□ -1.21
NUP53	YMR153W	PEP5	P12868	1029 aa		7.52	□□□□□ -1.21
NUP53	YMR153W	AMS1	P22855	1083 aa		7.52	□□□□□ -1.21
NUP53	YMR153W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	7.52	□□□□□ -1.21	not detected
NUP53	YMR153W	CDC13	P32797	924 aa	Known RBP	7.52	□□□□□ -1.21
NUP53	YMR153W	TRM7	P38238	310 aa	Known RBP	7.52	□□□□□ -1.21
NUP53	YMR153W	PFA3	P42836	336 aa		7.52	□□□□□ -1.21
NUP53	YMR153W	KTR5	P53966	522 aa	Predicted RBP	7.52	□□□□□ -1.21
NUP53	YMR153W	CRN1	Q06440	651 aa		7.52	□□□□□ -1.21
NUP53	YMR153W	RSC2	Q06488	889 aa		7.52	□□□□□ -1.21
NUP53	YMR153W	YOL036W	Q08206	761 aa		7.52	□□□□□ -1.21
NUP53	YMR153W	YDR056C	Q12025	205 aa		7.52	□□□□□ -1.21
NUP53	YMR153W	UPC2	Q12151	913 aa		7.52	□□□□□ -1.21
NUP53	YMR153W	RMP1	Q12530	201 aa		7.52	□□□□□ -1.21
NUP53	YMR153W	RRP12	Q12754	1228 aa	Known RBP	7.52	□□□□□ -1.21
NUP53	YMR153W	NOP14	Q99207	810 aa	Known RBP	7.52	□□□□□ -1.21
NUP53	YMR153W	CSF1	Q12150	2958 aa		7.51	□□□□□ -1.21
NUP53	YMR153W	STE2	D6VTK4	431 aa		7.51	□□□□□ -1.21
NUP53	YMR153W	MDM35	O60200	86 aa		7.51	□□□□□ -1.21
NUP53	YMR153W	SEC53	P07283	254 aa	Known RBP	7.51	□□□□□ -1.21
NUP53	YMR153W	SWI5	P08153	709 aa		7.51	□□□□□ -1.21
NUP53	YMR153W	PDC5	P16467	563 aa	Known RBP	7.51	□□□□□ -1.21
NUP53	YMR153W	GCD11	P32481	527 aa	Known RBP	7.51	□□□□□ -1.21
NUP53	YMR153W	HOG1	P32485	435 aa		7.51	□□□□□ -1.21
NUP53	YMR153W	YPT52	P36018	234 aa	Known RBP	7.51	□□□□□ -1.21
NUP53	YMR153W	YHR033W	P38690	423 aa		7.51	□□□□□ -1.21
NUP53	YMR153W	YHR020W	P38708	688 aa	Known RBP	7.51	□□□□□ -1.21
NUP53	YMR153W	LRO1	P40345	661 aa		7.51	□□□□□ -1.21
NUP53	YMR153W	ALK1	P43633	760 aa	Known RBP	7.51	□□□□□ -1.21
NUP53	YMR153W	PET130	P47065	347 aa		7.51	□□□□□ -1.21
NUP53	YMR153W	MAL13	P53338	473 aa		7.51	□□□□□ -1.21
NUP53	YMR153W	VPS60	Q03390	229 aa		7.51	□□□□□ -1.21
NUP53	YMR153W	RRB1	Q04225	511 aa	Known RBP	7.51	□□□□□ -1.21
NUP53	YMR153W	PNP1	Q05788	311 aa		7.51	□□□□□ -1.21
NUP53	YMR153W	BSC6	Q08280	497 aa		7.51	□□□□□ -1.21
NUP53	YMR153W	MRH1	Q12117	320 aa	Predicted RBP	7.51	□□□□□ -1.21
NUP53	YMR153W	ICT1	Q12385	394 aa		7.51	□□□□□ -1.21
NUP53	YMR153W	NHA1	Q99271	985 aa		7.51	□□□□□ -1.21
NUP53	YMR153W	IRA1	P18963	3092 aa		7.5	□□□□□ -1.21
NUP53	YMR153W	CDC8	P00572	216 aa		7.5	□□□□□ -1.21
NUP53	YMR153W	RIP1	P08067	215 aa		7.5	□□□□□ -1.21
NUP53	YMR153W	ILS1	P09436	1072 aa	Known RBP	7.5	□□□□□ -1.21
NUP53	YMR153W	YAR066W	P0CX18	203 aa		7.5	□□□□□ -1.21
NUP53	YMR153W	YHR214W	P0CX19	203 aa		7.5	□□□□□ -1.21
NUP53	YMR153W	HEM15	P16622	393 aa		7.5	□□□□□ -1.21
NUP53	YMR153W	SKN1	P33336	771 aa		7.5	□□□□□ -1.21
NUP53	YMR153W	EFM1	P38732	585 aa		7.5	□□□□□ -1.21
NUP53	YMR153W	UBA4	P38820	440 aa		7.5	□□□□□ -1.21
NUP53	YMR153W	HAT2	P39984	401 aa		7.5	□□□□□ -1.21
NUP53	YMR153W	RHO3	Q00245	231 aa	Known RBP	7.5	□□□□□ -1.21
NUP53	YMR153W	SPP2	Q02521	185 aa		7.5	□□□□□ -1.21
NUP53	YMR153W	CTK1	Q03957	528 aa	Known RBP	7.5	□□□□□ -1.21
NUP53	YMR153W	SIZ1	Q04195	904 aa		7.5	□□□□□ -1.21
NUP53	YMR153W	DIC1	Q06143	298 aa		7.5	□□□□□ -1.21
NUP53	YMR153W	SUL2	Q12325	893 aa		7.5	□□□□□ -1.21
NUP53	YMR153W	HSH49	Q99181	213 aa	Predicted RBP	7.5	□□□□□ -1.21
NUP53	YMR153W	PHO5	P00635	467 aa		7.49	□□□□□ -1.21
NUP53	YMR153W	CLB1	P24868	471 aa		7.49	□□□□□ -1.21
NUP53	YMR153W	SQT1	P35184	431 aa		7.49	□□□□□ -1.21
NUP53	YMR153W	SPP381	P38282	291 aa	Predicted RBP	7.49	□□□□□ -1.21
NUP53	YMR153W	MNN1	P39106	762 aa		7.49	□□□□□ -1.21
NUP53	YMR153W	SPF1	P39986	1215 aa	Known RBP	7.49	□□□□□ -1.21
NUP53	YMR153W	ALR2	P43553	858 aa		7.49	□□□□□ -1.21
NUP53	YMR153W	CCT8	P47079	568 aa	Known RBP	7.49	□□□□□ -1.21
NUP53	YMR153W	SGF73	P53165	657 aa		7.49	□□□□□ -1.21
NUP53	YMR153W	TRM12	Q04235	462 aa		7.49	□□□□□ -1.21
NUP53	YMR153W	BMT6	Q12291	365 aa		7.49	□□□□□ -1.21
NUP53	YMR153W	HRP1	Q99383	534 aa	Known RBP	7.49	□□□□□ -1.21
NUP53	YMR153W	MST1	P07236	462 aa		7.48	□□□□□ -1.21
NUP53	YMR153W	HOP1	P20050	605 aa		7.48	□□□□□ -1.21
NUP53	YMR153W	SEC14	P24280	304 aa	Known RBP	7.48	□□□□□ -1.21
NUP53	YMR153W	HRR25	P29295	494 aa	Known RBP	7.48	□□□□□ -1.21
NUP53	YMR153W	RIM1	P32445	135 aa	Known RBP	7.48	□□□□□ -1.21
NUP53	YMR153W	MEI5	P32489	222 aa		7.48	□□□□□ -1.21
NUP53	YMR153W	THI80	P35202	319 aa		7.48	□□□□□ -1.21
NUP53	YMR153W	LAS1	P36146	502 aa	Predicted RBP	7.48	□□□□□ -1.21
NUP53	YMR153W	YHL008C	P38750	627 aa		7.48	□□□□□ -1.21
NUP53	YMR153W	HSE1	P38753	452 aa		7.48	□□□□□ -1.21
NUP53	YMR153W	GIC1	P38785	314 aa		7.48	□□□□□ -1.21
NUP53	YMR153W	HOS4	P40480	1083 aa		7.48	□□□□□ -1.21
NUP53	YMR153W	GAT1	P43574	510 aa		7.48	□□□□□ -1.21
NUP53	YMR153W	COS12	P53053	380 aa		7.48	□□□□□ -1.21
NUP53	YMR153W	BOL2	P53082	120 aa		7.48	□□□□□ -1.21

Retrieved 100 of 5,963 RNA–protein pairs in 40.7 ms