RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C YLR345WQ06137 509 aa2.37□□□□□ -2.03
UBP11YKR098C IRC10Q08118 586 aa2.37□□□□□ -2.03
UBP11YKR098C ATG29Q12092 213 aa2.37□□□□□ -2.03
UBP11YKR098C RLM1Q12224 676 aa2.37□□□□□ -2.03
UBP11YKR098C ILS1P09436 1072 aaKnown RBP2.36□□□□□ -2.03
UBP11YKR098C MRP2P10663 115 aaPredicted RBP2.36□□□□□ -2.03
UBP11YKR098C KRS1P15180 591 aaKnown RBP2.36□□□□□ -2.03
UBP11YKR098C PUP3P25451 205 aaKnown RBP2.36□□□□□ -2.03
UBP11YKR098C ADK2P26364 225 aa2.36□□□□□ -2.03
UBP11YKR098C MRE11P32829 692 aa2.36□□□□□ -2.03
UBP11YKR098C SEF1P34228 1148 aa2.36□□□□□ -2.03
UBP11YKR098C FTH1P38310 465 aa2.36□□□□□ -2.03
UBP11YKR098C YJL068CP40363 299 aa2.36□□□□□ -2.03
UBP11YKR098C YIL166CP40445 542 aa2.36□□□□□ -2.03
UBP11YKR098C PET130P47065 347 aa2.36□□□□□ -2.03
UBP11YKR098C APT1P49435 187 aaKnown RBP2.36□□□□□ -2.03
UBP11YKR098C IMD4P50094 524 aaKnown RBP2.36□□□□□ -2.03
UBP11YKR098C HOS2P53096 452 aaPredicted RBP2.36□□□□□ -2.03
UBP11YKR098C BOP3P53958 396 aa2.36□□□□□ -2.03
UBP11YKR098C DPB4Q04603 196 aaKnown RBP2.36□□□□□ -2.03
UBP11YKR098C YLR455WQ06188 304 aa2.36□□□□□ -2.03
UBP11YKR098C RDL1Q12305 139 aaKnown RBP2.36□□□□□ -2.03
UBP11YKR098C PNS1Q12412 539 aa2.36□□□□□ -2.03
UBP11YKR098C SGS1P35187 1447 aa2.36□□□□□ -2.03
UBP11YKR098C BI2P03873 423 aa2.36□□□□□ -2.03
UBP11YKR098C MRP13P12686 339 aa2.36□□□□□ -2.03
UBP11YKR098C PDA1P16387 420 aaKnown RBP2.36□□□□□ -2.03
UBP11YKR098C TKL1P23254 680 aaKnown RBP2.36□□□□□ -2.03
UBP11YKR098C CLB3P24870 427 aa2.36□□□□□ -2.03
UBP11YKR098C SWI3P32591 825 aa2.36□□□□□ -2.03
UBP11YKR098C SEC66P33754 206 aa2.36□□□□□ -2.03
UBP11YKR098C CMC1P36064 111 aa2.36□□□□□ -2.03
UBP11YKR098C ALG5P40350 334 aa2.36□□□□□ -2.03
UBP11YKR098C CIN1P40987 1014 aa2.36□□□□□ -2.03
UBP11YKR098C FAR3P46671 204 aa2.36□□□□□ -2.03
UBP11YKR098C SMC3P47037 1230 aa2.36□□□□□ -2.03
UBP11YKR098C TWF1P53250 332 aa2.36□□□□□ -2.03
UBP11YKR098C YDR239CQ03780 787 aa2.36□□□□□ -2.03
UBP11YKR098C FIN1Q03898 291 aa2.36□□□□□ -2.03
UBP11YKR098C RQC1Q05468 723 aaKnown RBP2.36□□□□□ -2.03
UBP11YKR098C YOR389WQ08912 624 aa2.36□□□□□ -2.03
UBP11YKR098C LEU9Q12166 604 aaKnown RBP2.36□□□□□ -2.03
UBP11YKR098C ISN1Q99312 450 aa2.36□□□□□ -2.03
UBP11YKR098C HSP82P02829 709 aaKnown RBP2.35□□□□□ -2.03
UBP11YKR098C RAP1P11938 827 aa2.35□□□□□ -2.03
UBP11YKR098C SPE2P21182 396 aa2.35□□□□□ -2.03
UBP11YKR098C PRD1P25375 712 aa2.35□□□□□ -2.03
UBP11YKR098C IMG1P25626 169 aa2.35□□□□□ -2.03
UBP11YKR098C PMT1P33775 817 aa2.35□□□□□ -2.03
UBP11YKR098C YBL055CP34220 418 aaPredicted RBP2.35□□□□□ -2.03
UBP11YKR098C GCS1P35197 352 aa2.35□□□□□ -2.03
UBP11YKR098C TSC10P38342 320 aa2.35□□□□□ -2.03
UBP11YKR098C SGF73P53165 657 aa2.35□□□□□ -2.03
UBP11YKR098C YGR127WP53275 312 aa2.35□□□□□ -2.03
UBP11YKR098C IPI3P53877 555 aa2.35□□□□□ -2.03
UBP11YKR098C APM1Q00776 475 aaPredicted RBP2.35□□□□□ -2.03
UBP11YKR098C RMT2Q03305 412 aa2.35□□□□□ -2.03
UBP11YKR098C YER145C-AA0A023PYF4 145 aa2.34□□□□□ -2.03
UBP11YKR098C GPA1P08539 472 aa2.34□□□□□ -2.03
UBP11YKR098C SPO11P23179 398 aa2.34□□□□□ -2.03
UBP11YKR098C STE50P25344 346 aa2.34□□□□□ -2.03
UBP11YKR098C YCR006CP25350 157 aa2.34□□□□□ -2.03
UBP11YKR098C ADY2P25613 283 aa2.34□□□□□ -2.03
UBP11YKR098C ECM32P32644 1121 aaKnown RBP2.34□□□□□ -2.03
UBP11YKR098C STB6P36085 766 aa2.34□□□□□ -2.03
UBP11YKR098C NUP133P36161 1157 aa2.34□□□□□ -2.03
UBP11YKR098C OTU2P38747 307 aaKnown RBP2.34□□□□□ -2.03
UBP11YKR098C QRI1P43123 477 aaKnown RBP2.34□□□□□ -2.03
UBP11YKR098C NNF2P53253 936 aa2.34□□□□□ -2.03
UBP11YKR098C RPA49Q01080 415 aaPredicted RBP2.34□□□□□ -2.03
UBP11YKR098C FMP30Q02883 468 aa2.34□□□□□ -2.03
UBP11YKR098C MSC1Q03104 513 aa2.34□□□□□ -2.03
UBP11YKR098C YMR178WQ03219 274 aaKnown RBP2.34□□□□□ -2.03
UBP11YKR098C PFA5Q03289 374 aa2.34□□□□□ -2.03
UBP11YKR098C ERB1Q04660 807 aaKnown RBP2.34□□□□□ -2.03
UBP11YKR098C YLR049CQ12110 428 aa2.34□□□□□ -2.03
UBP11YKR098C ISA2Q12425 185 aa2.34□□□□□ -2.03
UBP11YKR098C YLR111WQ12528 110 aa2.34□□□□□ -2.03
UBP11YKR098C YRF1-4O13559 1382 aa2.34□□□□□ -2.03
UBP11YKR098C PMS1P14242 873 aa2.34□□□□□ -2.04
UBP11YKR098C APE1P14904 514 aa2.34□□□□□ -2.04
UBP11YKR098C ART10P18634 518 aaKnown RBP2.34□□□□□ -2.04
UBP11YKR098C MSS51P32335 436 aa2.34□□□□□ -2.04
UBP11YKR098C SAC1P32368 623 aaKnown RBP2.34□□□□□ -2.04
UBP11YKR098C OCT1P35999 772 aa2.34□□□□□ -2.04
UBP11YKR098C PXL1P36166 706 aa2.34□□□□□ -2.04
UBP11YKR098C APD1P38281 316 aa2.34□□□□□ -2.04
UBP11YKR098C SSU1P41930 458 aa2.34□□□□□ -2.04
UBP11YKR098C HXT14P42833 540 aa2.34□□□□□ -2.04
UBP11YKR098C PTR3P43606 678 aa2.34□□□□□ -2.04
UBP11YKR098C RPS10BP46784 105 aaKnown RBP2.34□□□□□ -2.04
UBP11YKR098C YTP1P53584 459 aa2.34□□□□□ -2.04
UBP11YKR098C BNI5P53890 448 aaKnown RBP2.34□□□□□ -2.04
UBP11YKR098C RCF1Q03713 159 aa2.34□□□□□ -2.04
UBP11YKR098C SNU56Q03782 492 aaKnown RBP2.34□□□□□ -2.04
UBP11YKR098C ARX1Q03862 593 aaKnown RBP2.34□□□□□ -2.04
UBP11YKR098C PIG1Q06216 648 aa2.34□□□□□ -2.04
UBP11YKR098C TEN1Q07921 160 aa2.34□□□□□ -2.04
UBP11YKR098C ETT1Q08421 412 aaKnown RBP2.34□□□□□ -2.04
UBP11YKR098C RPS10AQ08745 105 aaPredicted RBP2.34□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 74.3 ms