RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB4	YOR171C	RTK1	Q12100	620 aa	Predicted RBP	3.31	□□□□□ -1.88
LCB4	YOR171C	ZRT2	Q12436	422 aa		3.31	□□□□□ -1.88
LCB4	YOR171C	PCD1	Q12524	340 aa		3.31	□□□□□ -1.88
LCB4	YOR171C	CET1	O13297	549 aa	Predicted RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	JIP3	O13555	125 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	TUB2	P02557	457 aa	Known RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	TPK1	P06244	397 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	NUC1	P08466	329 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	MTF2	P10849	440 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	HMG2	P12684	1045 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	APE1	P14904	514 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	CWH43	P25618	953 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	MSS1	P32559	526 aa	Predicted RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	RPT3	P33298	428 aa	Known RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	YBR138C	P38277	524 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	TOM71	P38825	639 aa	Known RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	CRG1	P38892	291 aa	RIP-Chip data	3.3	□□□□□ -1.88	not detected
LCB4	YOR171C	YDR089W	P38966	869 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	THI6	P41835	540 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	MNT2	P53059	558 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	LCL3	P53153	274 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	RET3	P53600	189 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	CPR6	P53691	371 aa	Known RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	RSM28	Q03430	361 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	ERB1	Q04660	807 aa	Known RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	RTN1	Q04947	295 aa	Known RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	SSQ1	Q05931	657 aa	Predicted RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	PML1	Q07930	204 aa	Predicted RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	BRX1	Q08235	291 aa	Known RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	CHS5	Q12114	671 aa	Known RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	GCN4	P03069	281 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	GAL7	P08431	366 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	NCP1	P16603	691 aa	Known RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	PMA2	P19657	947 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	SEC15	P22224	910 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	YCL049C	P25577	312 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	PHO91	P27514	894 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	YEL043W	P32618	956 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	RPT5	P33297	434 aa	Known RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	MSN4	P33749	630 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	APE3	P37302	537 aa	Known RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	UTP9	P38882	575 aa	Known RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	MTW1	P39731	289 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	MPS3	P47069	682 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	YDL183C	P48569	320 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	DSD1	P53095	428 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	MUK1	Q02866	612 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	NNT1	Q05874	261 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	NUR1	Q12066	484 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	VPS54	Q12071	889 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	PSF3	Q12146	194 aa		3.3	□□□□□ -1.88
LCB4	YOR171C	PFK27	Q12471	397 aa	Predicted RBP	3.3	□□□□□ -1.88
LCB4	YOR171C	CDC42	P19073	191 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	CKA2	P19454	339 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	UBC1	P21734	215 aa	Known RBP	3.29	□□□□□ -1.88
LCB4	YOR171C	PHO3	P24031	467 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	URA7	P28274	579 aa	Known RBP	3.29	□□□□□ -1.88
LCB4	YOR171C	DAD2	P36162	133 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	MAK5	P38112	773 aa	Predicted RBP	3.29	□□□□□ -1.88
LCB4	YOR171C	APM3	P38153	483 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	UBP13	P38187	747 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	NTC20	P38302	140 aa	Predicted RBP	3.29	□□□□□ -1.88
LCB4	YOR171C	RFC3	P38629	340 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	YHR097C	P38809	366 aa	Known RBP	3.29	□□□□□ -1.88
LCB4	YOR171C	YEL025C	P39991	1188 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	MET18	P40469	1032 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	SPO22	P40511	975 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	EFM4	P40516	257 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	MAD2	P40958	196 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	LOC1	P43586	204 aa	Predicted RBP	3.29	□□□□□ -1.88
LCB4	YOR171C	PUS4	P48567	403 aa	Known RBP	3.29	□□□□□ -1.88
LCB4	YOR171C	ASE1	P50275	885 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	RRT6	P53117	311 aa	Predicted RBP	3.29	□□□□□ -1.88
LCB4	YOR171C	PEF1	P53238	335 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	SLI1	P53304	468 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	RPT6	Q01939	405 aa	Known RBP	3.29	□□□□□ -1.88
LCB4	YOR171C	TFC6	Q06339	672 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	DIN7	Q12086	430 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	RBD2	Q12270	262 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	HER1	Q12276	1246 aa		3.29	□□□□□ -1.88
LCB4	YOR171C	SEC3	P33332	1336 aa	Known RBP	3.28	□□□□□ -1.88
LCB4	YOR171C	TDH1	P00360	332 aa	Known RBP	3.28	□□□□□ -1.88
LCB4	YOR171C	ADE3	P07245	946 aa	Known RBP	3.28	□□□□□ -1.88
LCB4	YOR171C	PRB1	P09232	635 aa		3.28	□□□□□ -1.88
LCB4	YOR171C	YML002W	P0CF17	737 aa		3.28	□□□□□ -1.88
LCB4	YOR171C	MSS116	P15424	664 aa	Known RBP	3.28	□□□□□ -1.88
LCB4	YOR171C	STB6	P36085	766 aa		3.28	□□□□□ -1.88
LCB4	YOR171C	EHT1	P38295	451 aa		3.28	□□□□□ -1.88
LCB4	YOR171C	SIP3	P38717	1229 aa		3.28	□□□□□ -1.88
LCB4	YOR171C	PUG1	P40100	303 aa		3.28	□□□□□ -1.88
LCB4	YOR171C	YRB1	P41920	201 aa	Known RBP	3.28	□□□□□ -1.88
LCB4	YOR171C	PIB2	P53191	635 aa		3.28	□□□□□ -1.88
LCB4	YOR171C	CUL3	P53202	744 aa		3.28	□□□□□ -1.88
LCB4	YOR171C	EGD1	Q02642	157 aa	Known RBP	3.28	□□□□□ -1.88
LCB4	YOR171C	YMR206W	Q03695	313 aa		3.28	□□□□□ -1.88
LCB4	YOR171C	RRP17	Q04031	235 aa	Predicted RBP	3.28	□□□□□ -1.88
LCB4	YOR171C	CIR2	Q08822	631 aa		3.28	□□□□□ -1.88
LCB4	YOR171C	SPE3	Q12074	293 aa	Known RBP	3.28	□□□□□ -1.88
LCB4	YOR171C	USV1	Q12132	391 aa		3.28	□□□□□ -1.88
LCB4	YOR171C	GPM3	Q12326	303 aa		3.28	□□□□□ -1.88

Retrieved 100 of 5,963 RNA–protein pairs in 15.4 ms