RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeastyeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC40YDR364C MPS1P54199 764 aa3.51□□□□□ -1.85
CDC40YDR364C NSE5Q03718 556 aa3.51□□□□□ -1.85
CDC40YDR364C TAF11Q04226 346 aa3.51□□□□□ -1.85
CDC40YDR364C GAD1Q04792 585 aa3.51□□□□□ -1.85
CDC40YDR364C MFB1Q04922 465 aa3.51□□□□□ -1.85
CDC40YDR364C TRI1Q05024 226 aa3.51□□□□□ -1.85
CDC40YDR364C SKG3Q06315 1026 aa3.51□□□□□ -1.85
CDC40YDR364C HUA2Q12134 243 aa3.51□□□□□ -1.85
CDC40YDR364C ZRT2Q12436 422 aa3.51□□□□□ -1.85
CDC40YDR364C SMC6Q12749 1114 aa3.51□□□□□ -1.85
CDC40YDR364C NBL1Q3E7Y6 73 aa3.51□□□□□ -1.85
CDC40YDR364C FAS2P19097 1887 aaKnown RBP3.51□□□□□ -1.85
CDC40YDR364C YLR302CO13544 120 aa3.51□□□□□ -1.85
CDC40YDR364C PGK1P00560 416 aaKnown RBP3.51□□□□□ -1.85
CDC40YDR364C RED1P14291 827 aa3.51□□□□□ -1.85
CDC40YDR364C SAM2P19358 384 aaKnown RBP3.51□□□□□ -1.85
CDC40YDR364C IME1P21190 360 aa3.51□□□□□ -1.85
CDC40YDR364C ADE2P21264 571 aaKnown RBP3.51□□□□□ -1.85
CDC40YDR364C VPS1P21576 704 aaKnown RBP3.51□□□□□ -1.85
CDC40YDR364C ARG1P22768 420 aa3.51□□□□□ -1.85
CDC40YDR364C PRP22P24384 1145 aaKnown RBP3.51□□□□□ -1.85
CDC40YDR364C RMA1P36001 430 aaKnown RBP3.51□□□□□ -1.85
CDC40YDR364C YKT6P36015 200 aaKnown RBP3.51□□□□□ -1.85
CDC40YDR364C BYE1P36106 594 aa3.51□□□□□ -1.85
CDC40YDR364C RFT1P38206 574 aaPredicted RBP3.51□□□□□ -1.85
CDC40YDR364C KEL1P38853 1164 aaKnown RBP3.51□□□□□ -1.85
CDC40YDR364C TIF4631P39935 952 aaKnown RBP3.51□□□□□ -1.85
CDC40YDR364C ARF3P40994 183 aaRIP-Chip data3.51□□□□□ -1.85not detected
CDC40YDR364C IRC6P43615 237 aa3.51□□□□□ -1.85
CDC40YDR364C YPT11P48559 417 aa3.51□□□□□ -1.85
CDC40YDR364C PAN2P53010 1115 aaPredicted RBP3.51□□□□□ -1.85
CDC40YDR364C YGL138CP53122 345 aa3.51□□□□□ -1.85
CDC40YDR364C LSB1P53281 241 aa3.51□□□□□ -1.85
CDC40YDR364C BNI5P53890 448 aaKnown RBP3.51□□□□□ -1.85
CDC40YDR364C REC102Q02721 264 aa3.51□□□□□ -1.85
CDC40YDR364C ATG21Q02887 496 aa3.51□□□□□ -1.85
CDC40YDR364C VPS36Q06696 566 aa3.51□□□□□ -1.85
CDC40YDR364C CRD1Q07560 283 aa3.51□□□□□ -1.85
CDC40YDR364C TIP41Q12199 356 aa3.51□□□□□ -1.85
CDC40YDR364C DDP1Q99321 188 aaKnown RBP3.51□□□□□ -1.85
CDC40YDR364C DUR1,2P32528 1835 aaKnown RBP3.5□□□□□ -1.85
CDC40YDR364C TUS1Q06412 1307 aa3.5□□□□□ -1.85
CDC40YDR364C HIS4P00815 799 aaKnown RBP3.5□□□□□ -1.85
CDC40YDR364C GPA1P08539 472 aa3.5□□□□□ -1.85
CDC40YDR364C HMG2P12684 1045 aa3.5□□□□□ -1.85
CDC40YDR364C SGF29P25554 259 aa3.5□□□□□ -1.85
CDC40YDR364C MCM4P30665 933 aaKnown RBP3.5□□□□□ -1.85
CDC40YDR364C ARP2P32381 391 aaKnown RBP3.5□□□□□ -1.85
CDC40YDR364C CBF2P32504 956 aa3.5□□□□□ -1.85
CDC40YDR364C VPH1P32563 840 aaKnown RBP3.5□□□□□ -1.85
CDC40YDR364C MRPL10P36520 322 aa3.5□□□□□ -1.85
CDC40YDR364C YBR225WP38321 900 aa3.5□□□□□ -1.85
CDC40YDR364C APE4P38821 490 aa3.5□□□□□ -1.85
CDC40YDR364C HRB1P38922 454 aaKnown RBP RIP-Chip data3.5□□□□□ -1.85not detected
CDC40YDR364C YEL025CP39991 1188 aa3.5□□□□□ -1.85
CDC40YDR364C TPA1P40032 644 aaKnown RBP3.5□□□□□ -1.85
CDC40YDR364C VFA1P40080 203 aa3.5□□□□□ -1.85
CDC40YDR364C YJR061WP40355 935 aa3.5□□□□□ -1.85
CDC40YDR364C PSP1P50896 841 aaKnown RBP3.5□□□□□ -1.85
CDC40YDR364C CUE3P53137 624 aaKnown RBP3.5□□□□□ -1.85
CDC40YDR364C PEF1P53238 335 aa3.5□□□□□ -1.85
CDC40YDR364C FHN1P53279 174 aa3.5□□□□□ -1.85
CDC40YDR364C RTC4P53850 401 aa3.5□□□□□ -1.85
CDC40YDR364C ARG5,6Q01217 863 aa3.5□□□□□ -1.85
CDC40YDR364C SMD2Q06217 110 aaKnown RBP3.5□□□□□ -1.85
CDC40YDR364C MMR1Q06324 491 aa3.5□□□□□ -1.85
CDC40YDR364C DSE3Q08729 430 aa3.5□□□□□ -1.85
CDC40YDR364C CIR2Q08822 631 aa3.5□□□□□ -1.85
CDC40YDR364C NBP2Q12163 236 aa3.5□□□□□ -1.85
CDC40YDR364C PCD1Q12524 340 aa3.5□□□□□ -1.85
CDC40YDR364C CSR2Q12734 1121 aa3.5□□□□□ -1.85
CDC40YDR364C ECM3Q99252 613 aa3.5□□□□□ -1.85
CDC40YDR364C RPL22AP05749 121 aaKnown RBP3.49□□□□□ -1.85
CDC40YDR364C THR4P16120 514 aaKnown RBP3.49□□□□□ -1.85
CDC40YDR364C ALG1P16661 449 aa3.49□□□□□ -1.85
CDC40YDR364C CDC15P27636 974 aa3.49□□□□□ -1.85
CDC40YDR364C SAC6P32599 642 aaKnown RBP3.49□□□□□ -1.85
CDC40YDR364C MIC60P36112 540 aa3.49□□□□□ -1.85
CDC40YDR364C NOP4P37838 685 aaKnown RBP3.49□□□□□ -1.85
CDC40YDR364C MUP3P38734 546 aa3.49□□□□□ -1.85
CDC40YDR364C FSH1P38777 243 aaKnown RBP3.49□□□□□ -1.85
CDC40YDR364C SFB3P38810 929 aa3.49□□□□□ -1.85
CDC40YDR364C UBP7P40453 1071 aa3.49□□□□□ -1.85
CDC40YDR364C COG1P53079 417 aa3.49□□□□□ -1.85
CDC40YDR364C YPL071CQ02864 156 aa3.49□□□□□ -1.85
CDC40YDR364C YMR155WQ03795 547 aa3.49□□□□□ -1.85
CDC40YDR364C CSM3Q04659 317 aa3.49□□□□□ -1.85
CDC40YDR364C ARP9Q05123 467 aa3.49□□□□□ -1.85
CDC40YDR364C UTP21Q06078 939 aaPredicted RBP3.49□□□□□ -1.85
CDC40YDR364C YLH47Q06493 454 aa3.49□□□□□ -1.85
CDC40YDR364C SUE1Q06524 206 aa3.49□□□□□ -1.85
CDC40YDR364C TUF1P02992 437 aaKnown RBP3.48□□□□□ -1.85
CDC40YDR364C GCN4P03069 281 aa3.48□□□□□ -1.85
CDC40YDR364C MET17P06106 444 aa3.48□□□□□ -1.85
CDC40YDR364C SEC53P07283 254 aaKnown RBP3.48□□□□□ -1.85
CDC40YDR364C SES1P07284 462 aaKnown RBP3.48□□□□□ -1.85
CDC40YDR364C SEC12P11655 471 aa3.48□□□□□ -1.85
CDC40YDR364C KRS1P15180 591 aaKnown RBP3.48□□□□□ -1.85
CDC40YDR364C CKA1P15790 372 aa3.48□□□□□ -1.85
CDC40YDR364C RNR1P21524 888 aaKnown RBP3.48□□□□□ -1.85
Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms