RNA–Protein interactions for RNA: YDR177W

UBC1, Transcript of Ubiquitin-conjugating enzyme, yeast

Gene UBC1, Length 648 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC1	YDR177W	RFA2	P26754	273 aa	Known RBP	4.89	□□□□□ -1.63
UBC1	YDR177W	SMI1	P32566	505 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
UBC1	YDR177W	LIP5	P32875	414 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	LTV1	P34078	463 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	UIP5	P36137	443 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	GEX2	P36173	615 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	DIA4	P38705	446 aa	Predicted RBP	4.89	□□□□□ -1.63
UBC1	YDR177W	YHR054C	P38780	354 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	PES4	P39684	611 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	BUR6	P40096	142 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	YJL163C	P46996	555 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	IRC8	P47046	822 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	PET130	P47065	347 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	ECL1	P48235	211 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	YGL036W	P53185	909 aa	Predicted RBP	4.89	□□□□□ -1.63
UBC1	YDR177W	PRP42	Q03776	544 aa	Known RBP	4.89	□□□□□ -1.63
UBC1	YDR177W	ROY1	Q04847	553 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	RSF1	Q05043	376 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
UBC1	YDR177W	IRC13	Q08630	104 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	CFT2	Q12102	859 aa	Predicted RBP	4.89	□□□□□ -1.63
UBC1	YDR177W	NFI1	Q12216	726 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	FRE6	Q12473	712 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	SEC39	Q12745	709 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	DFG16	Q99234	619 aa		4.89	□□□□□ -1.63
UBC1	YDR177W	APE1	P14904	514 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	EST1	P17214	699 aa	Predicted RBP	4.88	□□□□□ -1.63
UBC1	YDR177W	URA7	P28274	579 aa	Known RBP	4.88	□□□□□ -1.63
UBC1	YDR177W	MSP1	P28737	362 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	MRE11	P32829	692 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	HES1	P35843	434 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	NTR2	P36118	322 aa	Predicted RBP	4.88	□□□□□ -1.63
UBC1	YDR177W	YKR073C	P36153	106 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	DAD2	P36162	133 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	AAP1	P37898	856 aa	Known RBP	4.88	□□□□□ -1.63
UBC1	YDR177W	ARO9	P38840	513 aa	Predicted RBP	4.88	□□□□□ -1.63
UBC1	YDR177W	MTG2	P38860	518 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
UBC1	YDR177W	SEC31	P38968	1273 aa	Known RBP	4.88	□□□□□ -1.63
UBC1	YDR177W	CCT6	P39079	546 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	UIP3	P39547	235 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	MEP1	P40260	492 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	ASG1	P40467	964 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	YIP4	P53093	235 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	COG2	P53271	262 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	FHN1	P53279	174 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	YGR151C	P53287	111 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	DIP5	P53388	608 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	BUD17	P53727	317 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	CTF4	Q01454	927 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	YDR109C	Q04585	715 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	DON1	Q05610	365 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	FMP45	Q07651	309 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	GPN2	Q08726	347 aa	Predicted RBP	4.88	□□□□□ -1.63
UBC1	YDR177W	BMS1	Q08965	1183 aa	Known RBP	4.88	□□□□□ -1.63
UBC1	YDR177W	APL4	Q12028	832 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	GPM3	Q12326	303 aa		4.88	□□□□□ -1.63
UBC1	YDR177W	AAC1	P04710	309 aa		4.87	□□□□□ -1.63
UBC1	YDR177W	RPL6B	P05739	176 aa	Known RBP	4.87	□□□□□ -1.63
UBC1	YDR177W	YPK1	P12688	680 aa	Known RBP	4.87	□□□□□ -1.63
UBC1	YDR177W	THR1	P17423	357 aa	Known RBP	4.87	□□□□□ -1.63
UBC1	YDR177W	LAC1	P28496	418 aa		4.87	□□□□□ -1.63
UBC1	YDR177W	SEC66	P33754	206 aa		4.87	□□□□□ -1.63
UBC1	YDR177W	PMT1	P33775	817 aa		4.87	□□□□□ -1.63
UBC1	YDR177W	TCD2	P36101	447 aa	Known RBP	4.87	□□□□□ -1.63
UBC1	YDR177W	LAS1	P36146	502 aa	Predicted RBP	4.87	□□□□□ -1.63
UBC1	YDR177W	NTC20	P38302	140 aa	Predicted RBP	4.87	□□□□□ -1.63
UBC1	YDR177W	PHM8	P40025	321 aa		4.87	□□□□□ -1.63
UBC1	YDR177W	RPN11	P43588	306 aa	Known RBP	4.87	□□□□□ -1.63
UBC1	YDR177W	DPB11	P47027	764 aa	Predicted RBP	4.87	□□□□□ -1.63
UBC1	YDR177W	RPS7B	P48164	190 aa	Known RBP	4.87	□□□□□ -1.63
UBC1	YDR177W	INP52	P50942	1183 aa		4.87	□□□□□ -1.63
UBC1	YDR177W	RPL6A	Q02326	176 aa	Known RBP	4.87	□□□□□ -1.63
UBC1	YDR177W	YPL107W	Q02873	248 aa		4.87	□□□□□ -1.63
UBC1	YDR177W	HOT1	Q03213	719 aa		4.87	□□□□□ -1.63
UBC1	YDR177W	DCI1	Q08558	271 aa		4.87	□□□□□ -1.63
UBC1	YDR177W	USV1	Q12132	391 aa		4.87	□□□□□ -1.63
UBC1	YDR177W	RKI1	Q12189	258 aa		4.87	□□□□□ -1.63
UBC1	YDR177W	CHO2	P05374	869 aa	Known RBP	4.86	□□□□□ -1.63
UBC1	YDR177W	RPL3	P14126	387 aa	Known RBP	4.86	□□□□□ -1.63
UBC1	YDR177W	SRV2	P17555	526 aa	Known RBP	4.86	□□□□□ -1.63
UBC1	YDR177W	PHO84	P25297	587 aa	Known RBP	4.86	□□□□□ -1.63
UBC1	YDR177W	RRP7	P25368	297 aa	Predicted RBP	4.86	□□□□□ -1.63
UBC1	YDR177W	CNE1	P27825	502 aa		4.86	□□□□□ -1.63
UBC1	YDR177W	SSE2	P32590	693 aa	Known RBP	4.86	□□□□□ -1.63
UBC1	YDR177W	YME1	P32795	747 aa		4.86	□□□□□ -1.63
UBC1	YDR177W	WBP1	P33767	430 aa	Known RBP	4.86	□□□□□ -1.63
UBC1	YDR177W	RRP1	P35178	278 aa	Predicted RBP	4.86	□□□□□ -1.63
UBC1	YDR177W	MAF1	P41910	395 aa		4.86	□□□□□ -1.63
UBC1	YDR177W	URB2	P47108	1174 aa		4.86	□□□□□ -1.63
UBC1	YDR177W	TCB2	P48231	1178 aa		4.86	□□□□□ -1.63
UBC1	YDR177W	LYS4	P49367	693 aa	Predicted RBP	4.86	□□□□□ -1.63
UBC1	YDR177W	MNN10	P50108	393 aa	Known RBP	4.86	□□□□□ -1.63
UBC1	YDR177W	RIM8	P53179	542 aa		4.86	□□□□□ -1.63
UBC1	YDR177W	YGR111W	P53265	400 aa		4.86	□□□□□ -1.63
UBC1	YDR177W	ATG4	P53867	494 aa		4.86	□□□□□ -1.63
UBC1	YDR177W	NCS2	P53923	493 aa	Predicted RBP	4.86	□□□□□ -1.63
UBC1	YDR177W	RNT1	Q02555	471 aa		4.86	□□□□□ -1.63
UBC1	YDR177W	VTI1	Q04338	217 aa		4.86	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 11.3 ms