RNA–Protein interactions for RNA: YJL041W

NSP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NSP1, Length 2,472 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NSP1	YJL041W	SIW14	P53965	281 aa		3.54	□□□□□ -1.84
NSP1	YJL041W	PEX13	P80667	386 aa		3.54	□□□□□ -1.84
NSP1	YJL041W	REC102	Q02721	264 aa		3.54	□□□□□ -1.84
NSP1	YJL041W	MUK1	Q02866	612 aa		3.54	□□□□□ -1.84
NSP1	YJL041W	TAF12	Q03761	539 aa		3.54	□□□□□ -1.84
NSP1	YJL041W	GFD1	Q04839	188 aa	Known RBP	3.54	□□□□□ -1.84
NSP1	YJL041W	FRE5	Q08908	694 aa		3.54	□□□□□ -1.84
NSP1	YJL041W	YPL216W	Q08964	1102 aa		3.54	□□□□□ -1.84
NSP1	YJL041W	FMP40	Q08968	688 aa	Predicted RBP	3.54	□□□□□ -1.84
NSP1	YJL041W	DIN7	Q12086	430 aa		3.54	□□□□□ -1.84
NSP1	YJL041W	FAL1	Q12099	399 aa	Known RBP	3.54	□□□□□ -1.84
NSP1	YJL041W	OSW2	Q12202	724 aa		3.54	□□□□□ -1.84
NSP1	YJL041W	PHM7	Q12252	991 aa		3.54	□□□□□ -1.84
NSP1	YJL041W	COQ4	O13525	335 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	PIF1	P07271	859 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	WHI2	P12611	486 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	KIN2	P13186	1147 aa	Known RBP	3.53	□□□□□ -1.84
NSP1	YJL041W	FUS3	P16892	353 aa	Known RBP	3.53	□□□□□ -1.84
NSP1	YJL041W	DAL80	P26343	269 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	FUN30	P31380	1131 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	LYP1	P32487	611 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	PPQ1	P32945	549 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	VPS45	P38932	577 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	CEM1	P39525	442 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	RTR1	P40084	226 aa	Predicted RBP	3.53	□□□□□ -1.84
NSP1	YJL041W	NEO1	P40527	1151 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	GTT1	P40582	234 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	BUD6	P41697	788 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	YFL066C	P43538	392 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	COS4	P43542	379 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	MAD3	P47074	515 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	COS5	P47187	383 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	FAA4	P47912	694 aa	Known RBP	3.53	□□□□□ -1.84
NSP1	YJL041W	PAN2	P53010	1115 aa	Predicted RBP	3.53	□□□□□ -1.84
NSP1	YJL041W	MRM2	P53123	320 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	COS1	P53822	381 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	EEB1	Q02891	456 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	SYF1	Q04048	859 aa	Predicted RBP	3.53	□□□□□ -1.84
NSP1	YJL041W	GAL83	Q04739	417 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	BUR2	Q05949	395 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	SYT1	Q06836	1226 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	SPO75	Q07798	868 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	CTI6	Q08923	506 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	MDM20	Q12387	796 aa	Known RBP	3.53	□□□□□ -1.84
NSP1	YJL041W	ADF1	Q2V2Q1	113 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	CHS1	P08004	1131 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	YGL041W-A	P0C5N3	154 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	MTF2	P10849	440 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	FRS2	P15625	503 aa	Known RBP	3.53	□□□□□ -1.84
NSP1	YJL041W	POL30	P15873	258 aa	Known RBP	3.53	□□□□□ -1.84
NSP1	YJL041W	HXT2	P23585	541 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	VMA16	P23968	213 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	3.53	□□□□□ -1.84	not detected
NSP1	YJL041W	CLB3	P24870	427 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	GRX1	P25373	110 aa	Known RBP	3.53	□□□□□ -1.84
NSP1	YJL041W	RSC6	P25632	483 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	HXT1	P32465	570 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	DOM34	P33309	386 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	TPO5	P36029	618 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	YHR112C	P38716	378 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	CTM1	P38818	585 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	DDI1	P40087	428 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	HPM1	P40481	377 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	SLM1	P40485	686 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	SAD1	P43589	448 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	NMD5	P46970	1048 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	GNP1	P48813	663 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	RNR4	P49723	345 aa	Known RBP	3.53	□□□□□ -1.84
NSP1	YJL041W	YGR237C	P50089	785 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	MNT2	P53059	558 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	TOF1	P53840	1238 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	SNX41	Q04053	625 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	VTA1	Q06263	330 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	GRS2	Q06817	618 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	SDH5	Q08230	162 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	SLD7	Q08457	257 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	ELG1	Q12050	791 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	HAL9	Q12180	1030 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	YGR161W-C	Q3E744	92 aa		3.53	□□□□□ -1.84
NSP1	YJL041W	VMA2	P16140	517 aa	Known RBP	3.52	□□□□□ -1.85
NSP1	YJL041W	HSP60	P19882	572 aa	Known RBP	3.52	□□□□□ -1.85
NSP1	YJL041W	AGP1	P25376	633 aa		3.52	□□□□□ -1.85
NSP1	YJL041W	RPS7A	P26786	190 aa	Known RBP	3.52	□□□□□ -1.85
NSP1	YJL041W	MVD1	P32377	396 aa	Known RBP	3.52	□□□□□ -1.85
NSP1	YJL041W	UGA4	P32837	571 aa		3.52	□□□□□ -1.85
NSP1	YJL041W	DUT1	P33317	147 aa		3.52	□□□□□ -1.85
NSP1	YJL041W	YBL055C	P34220	418 aa	Predicted RBP	3.52	□□□□□ -1.85
NSP1	YJL041W	NTR2	P36118	322 aa	Predicted RBP	3.52	□□□□□ -1.85
NSP1	YJL041W	TDP1	P38319	544 aa		3.52	□□□□□ -1.85
NSP1	YJL041W	SBE22	P38814	852 aa		3.52	□□□□□ -1.85
NSP1	YJL041W	YHR131C	P38835	850 aa		3.52	□□□□□ -1.85
NSP1	YJL041W	ATG7	P38862	630 aa		3.52	□□□□□ -1.85
NSP1	YJL041W	SSO2	P39926	295 aa		3.52	□□□□□ -1.85
NSP1	YJL041W	SSP120	P39931	234 aa	Known RBP	3.52	□□□□□ -1.85
NSP1	YJL041W	RSP5	P39940	809 aa	Known RBP	3.52	□□□□□ -1.85
NSP1	YJL041W	AST2	P39945	430 aa	Known RBP	3.52	□□□□□ -1.85
NSP1	YJL041W	YER184C	P39961	794 aa		3.52	□□□□□ -1.85
NSP1	YJL041W	SPF1	P39986	1215 aa	Known RBP	3.52	□□□□□ -1.85
NSP1	YJL041W	SOK1	P40317	901 aa		3.52	□□□□□ -1.85
NSP1	YJL041W	EFM4	P40516	257 aa		3.52	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 46.8 ms