RNA–Protein interactions for RNA: ENSMUST00000113706.9

Trim39-203, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim39, Length 3,204 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-203ENSMUST00000113706 Gm20537G3UYK7 97 aa8.04□□□□□ -1.12
Trim39-203ENSMUST00000113706 Gm10382Q3V0T5 144 aa8□□□□□ -1.13
Trim39-203ENSMUST00000113706 2310057N15RikQ9D6T8 200 aa7.97□□□□□ -1.13
Trim39-203ENSMUST00000113706 Pla2g10Q9QXX3 151 aa7.94□□□□□ -1.14
Trim39-203ENSMUST00000113706 Herc1E9PZP8 4859 aa7.94□□□□□ -1.14
Trim39-203ENSMUST00000113706 Gm17606F6ZL36 78 aa7.93□□□□□ -1.14
Trim39-203ENSMUST00000113706 Sec61bQ9CQS8 96 aaKnown RBP7.92□□□□□ -1.14
Trim39-203ENSMUST00000113706 2210017I01RikA0A0A6YVV1 95 aa7.92□□□□□ -1.14
Trim39-203ENSMUST00000113706 Krtap3-1A2A591 98 aa7.92□□□□□ -1.14
Trim39-203ENSMUST00000113706 Lce1mQ9CR91 182 aa7.9□□□□□ -1.14
Trim39-203ENSMUST00000113706 Gm3880A0A1B0GSB3 72 aa7.88□□□□□ -1.15
Trim39-203ENSMUST00000113706 Gm9955Q8CEJ8 102 aa7.86□□□□□ -1.15
Trim39-203ENSMUST00000113706 Mp68P56379 58 aa7.82□□□□□ -1.16
Trim39-203ENSMUST00000113706 Krtap13-1Q8K198 168 aa7.81□□□□□ -1.16
Trim39-203ENSMUST00000113706 Gm20538F6Z9R1 75 aa7.71□□□□□ -1.17
Trim39-203ENSMUST00000113706 Krtap16-3Q8C1I6 86 aa7.7□□□□□ -1.18
Trim39-203ENSMUST00000113706 Crct1Q6PAI5 102 aa7.69□□□□□ -1.18
Trim39-203ENSMUST00000113706 Prm2P07978 107 aa7.66□□□□□ -1.18
Trim39-203ENSMUST00000113706 Romo1P60603 79 aa7.66□□□□□ -1.18
Trim39-203ENSMUST00000113706 Krtap1-5A2A590 122 aa7.65□□□□□ -1.18
Trim39-203ENSMUST00000113706 Ush2AQ2QI47 5193 aa7.64□□□□□ -1.19
Trim39-203ENSMUST00000113706 Gm10318A0A1W2P728 225 aa7.63□□□□□ -1.19
Trim39-203ENSMUST00000113706 Krtap19-1Q925H2 87 aa7.62□□□□□ -1.19
Trim39-203ENSMUST00000113706 Fam229aB2KGE5 128 aa7.61□□□□□ -1.19
Trim39-203ENSMUST00000113706 Hmcn2A2AJ76 5100 aa7.59□□□□□ -1.19
Trim39-203ENSMUST00000113706 Krtap19-3Q925H6 87 aa7.58□□□□□ -1.2
Trim39-203ENSMUST00000113706 BC029722A0A0N4SW31 51 aa7.56□□□□□ -1.2
Trim39-203ENSMUST00000113706 Gm18596A0A1W2P860 280 aa7.54□□□□□ -1.2
Trim39-203ENSMUST00000113706 Ubr4A2AN08 5180 aa7.5□□□□□ -1.21
Trim39-203ENSMUST00000113706 ZanO88799 5376 aa7.46□□□□□ -1.22
Trim39-203ENSMUST00000113706 Gm9789Q8BIG3 52 aa7.44□□□□□ -1.22
Trim39-203ENSMUST00000113706 Krtap1-3A2A588 173 aa7.44□□□□□ -1.22
Trim39-203ENSMUST00000113706 B930094E09RikQ8C4T2 136 aa7.42□□□□□ -1.22
Trim39-203ENSMUST00000113706 Gm19402J3QJV4 266 aa7.4□□□□□ -1.22
Trim39-203ENSMUST00000113706 4932415D10RikA0A1W2P6U8 4986 aa7.4□□□□□ -1.23
Trim39-203ENSMUST00000113706 Prm1P02319 51 aa7.37□□□□□ -1.23
Trim39-203ENSMUST00000113706 Ndufaf8A2AMZ4 74 aa7.34□□□□□ -1.23
Trim39-203ENSMUST00000113706 Gm19426M0QWC7 77 aa7.34□□□□□ -1.23
Trim39-203ENSMUST00000113706 Gm21887J3QQ04 176 aa7.34□□□□□ -1.23
Trim39-203ENSMUST00000113706 Gm7735D3YX18 52 aa7.33□□□□□ -1.24
Trim39-203ENSMUST00000113706 Gm17402F6Z0L5 76 aa7.28□□□□□ -1.24
Trim39-203ENSMUST00000113706 LorP18165 486 aa7.26□□□□□ -1.25
Trim39-203ENSMUST00000113706 Krtap1-4Q3V2D6 188 aa7.23□□□□□ -1.25
Trim39-203ENSMUST00000113706 Fat4Q2PZL6 4981 aa7.22□□□□□ -1.25
Trim39-203ENSMUST00000113706 Spink7Q6IE32 76 aa7.22□□□□□ -1.25
Trim39-203ENSMUST00000113706 Sprr2a3Q4KL71 83 aa7.18□□□□□ -1.26
Trim39-203ENSMUST00000113706 Sprr2a1Q9CQK8 83 aa7.18□□□□□ -1.26
Trim39-203ENSMUST00000113706 Rnf213E9Q555 5152 aaKnown RBP7.17□□□□□ -1.26
Trim39-203ENSMUST00000113706 Lce1jD3YUU5 139 aa7.03□□□□□ -1.28
Trim39-203ENSMUST00000113706 Krtap12-1Q9Z287 130 aa6.97□□□□□ -1.29
Trim39-203ENSMUST00000113706 Krtap7-1Q9D3I6 87 aa6.93□□□□□ -1.3
Trim39-203ENSMUST00000113706 Gm19668J3QMD1 248 aa6.92□□□□□ -1.3
Trim39-203ENSMUST00000113706 SspoQ8CG65 4998 aa6.91□□□□□ -1.3
Trim39-203ENSMUST00000113706 Krtap19-9aF8WH65 55 aa6.89□□□□□ -1.31
Trim39-203ENSMUST00000113706 Gm9112A2AI92 75 aa6.81□□□□□ -1.32
Trim39-203ENSMUST00000113706 Krtap17-1A2A5X6 109 aa6.8□□□□□ -1.32
Trim39-203ENSMUST00000113706 Krtap19-2Q925I0 141 aa6.74□□□□□ -1.33
Trim39-203ENSMUST00000113706 Camk2n1Q6QWF9 78 aa6.72□□□□□ -1.33
Trim39-203ENSMUST00000113706 Gm40193A0A1B0GT39 78 aa6.69□□□□□ -1.34
Trim39-203ENSMUST00000113706 Krtap9-5A2A5X3 358 aa6.69□□□□□ -1.34
Trim39-203ENSMUST00000113706 Gm10061D3Z714 54 aa6.68□□□□□ -1.34
Trim39-203ENSMUST00000113706 Lce1iQ9D6P5 149 aa6.6□□□□□ -1.35
Trim39-203ENSMUST00000113706 Lce1a2Q9D1K4 149 aa6.53□□□□□ -1.36
Trim39-203ENSMUST00000113706 Muc5bE9Q5I3 4800 aa6.44□□□□□ -1.38
Trim39-203ENSMUST00000113706 Krtap8-1O08633 61 aa6.38□□□□□ -1.39
Trim39-203ENSMUST00000113706 Gm6358A0A087WPH4 74 aa6.35□□□□□ -1.39
Trim39-203ENSMUST00000113706 Gm11569B1AQB1 180 aa6.31□□□□□ -1.4
Trim39-203ENSMUST00000113706 Krtap19-9bQ99NG9 58 aa6.31□□□□□ -1.4
Trim39-203ENSMUST00000113706 Tnp1P10856 55 aa6.25□□□□□ -1.41
Trim39-203ENSMUST00000113706 Mt2P02798 61 aa6.24□□□□□ -1.41
Trim39-203ENSMUST00000113706 Krtap9-3Q3V2C1 136 aa6.1□□□□□ -1.43
Trim39-203ENSMUST00000113706 Lce1hQ9D6R3 140 aa6.02□□□□□ -1.45
Trim39-203ENSMUST00000113706 2310046K23RikA0A0A6YVW6 87 aa6.01□□□□□ -1.45
Trim39-203ENSMUST00000113706 Mdn1A2ANY6 5589 aaKnown RBP5.98□□□□□ -1.45
Trim39-203ENSMUST00000113706 Krtap22-2J3QNX6 67 aa5.87□□□□□ -1.47
Trim39-203ENSMUST00000113706 Krtap4-6Q3V4B7 195 aa5.76□□□□□ -1.49
Trim39-203ENSMUST00000113706 Gm11555B1AQ89 175 aa5.74□□□□□ -1.49
Trim39-203ENSMUST00000113706 Lce1gQ9D195 139 aa5.71□□□□□ -1.5
Trim39-203ENSMUST00000113706 Krtap4-2B1AQ85 167 aa5.68□□□□□ -1.5
Trim39-203ENSMUST00000113706 Krtap4-1Q3UUY3 169 aa5.64□□□□□ -1.51
Trim39-203ENSMUST00000113706 Gm11596B1AQB0 205 aa5.57□□□□□ -1.52
Trim39-203ENSMUST00000113706 Syne2Q6ZWQ0 6874 aaKnown RBP5.54□□□□□ -1.52
Trim39-203ENSMUST00000113706 Gm10272F7CZ33 110 aa5.53□□□□□ -1.52
Trim39-203ENSMUST00000113706 Lce1dQ9D731 133 aa5.53□□□□□ -1.52
Trim39-203ENSMUST00000113706 Gm11564A2A4L9 201 aa5.46□□□□□ -1.54
Trim39-203ENSMUST00000113706 Gm11563B1AQ90 168 aa5.46□□□□□ -1.54
Trim39-203ENSMUST00000113706 Gm11595B1AQA7 289 aa5.46□□□□□ -1.54
Trim39-203ENSMUST00000113706 Krtap4-8B1AQA8 209 aa5.46□□□□□ -1.54
Trim39-203ENSMUST00000113706 Sprr2gO70558 76 aa5.4□□□□□ -1.54
Trim39-203ENSMUST00000113706 Mt4P47945 62 aa5.37□□□□□ -1.55
Trim39-203ENSMUST00000113706 Lce1eQ9D139 143 aa5.37□□□□□ -1.55
Trim39-203ENSMUST00000113706 Krtap4-9B1AQA9 244 aa5.33□□□□□ -1.56
Trim39-203ENSMUST00000113706 Sprr2dO70555 85 aa5.33□□□□□ -1.56
Trim39-203ENSMUST00000113706 Gm11562A0PK51 136 aa5.3□□□□□ -1.56
Trim39-203ENSMUST00000113706 Fsip2A2ARZ3 6995 aa5.29□□□□□ -1.56
Trim39-203ENSMUST00000113706 Lce1bQ9D149 137 aa5.29□□□□□ -1.56
Trim39-203ENSMUST00000113706 Gm11938Q9D3H4 131 aa5.29□□□□□ -1.56
Trim39-203ENSMUST00000113706 Gm38119A0A0A6YX29 146 aa5.26□□□□□ -1.57
Trim39-203ENSMUST00000113706 Syne1Q6ZWR6 8799 aa5.25□□□□□ -1.57
Trim39-203ENSMUST00000113706 Lce1cQ9D1C5 147 aa5.17□□□□□ -1.58
Retrieved 100 of 22,080 RNA–protein pairs in 66.1 ms