RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	MMS22	Q06164	1454 aa		2.57	□□□□□ -2
SNU114	YKL173W	MIS1	P09440	975 aa	Known RBP	2.57	□□□□□ -2
SNU114	YKL173W	LRP1	P38801	184 aa	Known RBP	2.57	□□□□□ -2
SNU114	YKL173W	AXL1	P40851	1208 aa		2.57	□□□□□ -2
SNU114	YKL173W	TIM44	Q01852	431 aa		2.57	□□□□□ -2
SNU114	YKL173W	MFB1	Q04922	465 aa		2.57	□□□□□ -2
SNU114	YKL173W	ARR3	Q06598	404 aa		2.57	□□□□□ -2
SNU114	YKL173W	ECM3	Q99252	613 aa		2.57	□□□□□ -2
SNU114	YKL173W	CHC1	P22137	1653 aa	Known RBP	2.56	□□□□□ -2
SNU114	YKL173W	MET17	P06106	444 aa		2.56	□□□□□ -2
SNU114	YKL173W	TUP1	P16649	713 aa		2.56	□□□□□ -2
SNU114	YKL173W	THR1	P17423	357 aa	Known RBP	2.56	□□□□□ -2
SNU114	YKL173W	TPM1	P17536	199 aa	Known RBP	2.56	□□□□□ -2
SNU114	YKL173W	ROX1	P25042	368 aa		2.56	□□□□□ -2
SNU114	YKL173W	MRP20	P32387	263 aa		2.56	□□□□□ -2
SNU114	YKL173W	EMP70	P32802	667 aa		2.56	□□□□□ -2
SNU114	YKL173W	PXA1	P41909	870 aa		2.56	□□□□□ -2
SNU114	YKL173W	TAH11	P47112	604 aa		2.56	□□□□□ -2
SNU114	YKL173W	ENP2	P48234	707 aa	Known RBP	2.56	□□□□□ -2
SNU114	YKL173W	VPS73	P53142	486 aa	Known RBP	2.56	□□□□□ -2
SNU114	YKL173W	SXM1	Q04175	944 aa	Known RBP	2.56	□□□□□ -2
SNU114	YKL173W	CRD1	Q07560	283 aa		2.56	□□□□□ -2
SNU114	YKL173W	HBT1	Q07653	1046 aa	Known RBP	2.56	□□□□□ -2
SNU114	YKL173W	ISN1	Q99312	450 aa		2.56	□□□□□ -2
SNU114	YKL173W	IML1	P47170	1584 aa		2.56	□□□□□ -2
SNU114	YKL173W	PRE2	P30656	287 aa	Known RBP	2.56	□□□□□ -2
SNU114	YKL173W	FLO10	P36170	1169 aa		2.56	□□□□□ -2
SNU114	YKL173W	MRX6	P48564	524 aa		2.56	□□□□□ -2
SNU114	YKL173W	COS12	P53053	380 aa		2.56	□□□□□ -2
SNU114	YKL173W	TRS31	Q03337	283 aa		2.56	□□□□□ -2
SNU114	YKL173W	CTK1	Q03957	528 aa	Known RBP	2.56	□□□□□ -2
SNU114	YKL173W	SYF1	Q04048	859 aa	Predicted RBP	2.56	□□□□□ -2
SNU114	YKL173W	VAM6	Q07468	1049 aa		2.56	□□□□□ -2
SNU114	YKL173W	COX17	Q12287	69 aa		2.56	□□□□□ -2
SNU114	YKL173W	YRF1-1	P0CX20	1796 aa		2.56	□□□□□ -2
SNU114	YKL173W	YRF1-5	P0CX21	1796 aa		2.56	□□□□□ -2
SNU114	YKL173W	YRF1-8	P0CX22	1796 aa		2.56	□□□□□ -2
SNU114	YKL173W	YPK9	Q12697	1472 aa		2.56	□□□□□ -2
SNU114	YKL173W	HSP82	P02829	709 aa	Known RBP	2.55	□□□□□ -2
SNU114	YKL173W	CPA2	P03965	1118 aa	Known RBP	2.55	□□□□□ -2
SNU114	YKL173W	PHO11	P35842	467 aa		2.55	□□□□□ -2
SNU114	YKL173W	TAF5	P38129	798 aa		2.55	□□□□□ -2
SNU114	YKL173W	PHO12	P38693	467 aa		2.55	□□□□□ -2
SNU114	YKL173W	PPE1	P38796	400 aa		2.55	□□□□□ -2
SNU114	YKL173W	BUD16	P39988	312 aa		2.55	□□□□□ -2
SNU114	YKL173W	BFA1	P47113	574 aa		2.55	□□□□□ -2
SNU114	YKL173W	COG1	P53079	417 aa		2.55	□□□□□ -2
SNU114	YKL173W	DUO1	P53168	247 aa	Known RBP	2.55	□□□□□ -2
SNU114	YKL173W	YBP2	P53169	641 aa		2.55	□□□□□ -2
SNU114	YKL173W	VPS75	P53853	264 aa		2.55	□□□□□ -2
SNU114	YKL173W	CSL4	P53859	292 aa	Predicted RBP	2.55	□□□□□ -2
SNU114	YKL173W	STP3	Q05937	343 aa		2.55	□□□□□ -2
SNU114	YKL173W	YLR352W	Q06479	807 aa		2.55	□□□□□ -2
SNU114	YKL173W	YCG1	Q06680	1035 aa		2.55	□□□□□ -2
SNU114	YKL173W	YOL159C-A	Q3E769	90 aa		2.55	□□□□□ -2
SNU114	YKL173W	TY2B-B	Q12491	1770 aa		2.55	□□□□□ -2
SNU114	YKL173W	CET1	O13297	549 aa	Predicted RBP	2.55	□□□□□ -2
SNU114	YKL173W	PCL5	P38794	229 aa		2.55	□□□□□ -2
SNU114	YKL173W	YMR155W	Q03795	547 aa		2.55	□□□□□ -2
SNU114	YKL173W	ENT4	Q07872	247 aa		2.55	□□□□□ -2
SNU114	YKL173W	YPL272C	Q08984	517 aa		2.55	□□□□□ -2
SNU114	YKL173W	SNT2	P53127	1403 aa		2.55	□□□□□ -2
SNU114	YKL173W	PDR12	Q02785	1511 aa		2.55	□□□□□ -2
SNU114	YKL173W	TY2A-LR1	P0C2J4	438 aa		2.55	□□□□□ -2
SNU114	YKL173W	TY2A-F	P0CX61	438 aa		2.55	□□□□□ -2
SNU114	YKL173W	TY2A-GR2	P0CX62	438 aa		2.55	□□□□□ -2
SNU114	YKL173W	TY2A-C	P25383	438 aa		2.55	□□□□□ -2
SNU114	YKL173W	DPH2	P32461	534 aa		2.55	□□□□□ -2
SNU114	YKL173W	SAC6	P32599	642 aa	Known RBP	2.55	□□□□□ -2
SNU114	YKL173W	BCS1	P32839	456 aa		2.55	□□□□□ -2
SNU114	YKL173W	TFC3	P34111	1160 aa		2.55	□□□□□ -2
SNU114	YKL173W	YKL050C	P35736	922 aa		2.55	□□□□□ -2
SNU114	YKL173W	UBP13	P38187	747 aa		2.55	□□□□□ -2
SNU114	YKL173W	PES4	P39684	611 aa		2.55	□□□□□ -2
SNU114	YKL173W	YEL057C	P39983	233 aa		2.55	□□□□□ -2
SNU114	YKL173W	ARB1	P40024	610 aa	Known RBP	2.55	□□□□□ -2
SNU114	YKL173W	SPO22	P40511	975 aa		2.55	□□□□□ -2
SNU114	YKL173W	YGR016W	P53209	190 aa		2.55	□□□□□ -2
SNU114	YKL173W	BSC5	P53755	489 aa		2.55	□□□□□ -2
SNU114	YKL173W	TY2A-DR2	Q03483	438 aa		2.55	□□□□□ -2
SNU114	YKL173W	RPC11	Q04307	110 aa	Predicted RBP	2.55	□□□□□ -2
SNU114	YKL173W	NMD4	Q12129	218 aa		2.55	□□□□□ -2
SNU114	YKL173W	TY2A-B	Q12260	438 aa		2.55	□□□□□ -2
SNU114	YKL173W	TY2A-OR2	Q12293	438 aa		2.55	□□□□□ -2
SNU114	YKL173W	TY2A-DR1	Q12392	438 aa		2.55	□□□□□ -2
SNU114	YKL173W	TY2A-OR1	Q12439	438 aa		2.55	□□□□□ -2
SNU114	YKL173W	POM34	Q12445	299 aa		2.55	□□□□□ -2
SNU114	YKL173W	TY2A-DR3	Q99303	438 aa		2.55	□□□□□ -2
SNU114	YKL173W	VCX1	Q99385	411 aa		2.55	□□□□□ -2
SNU114	YKL173W	RNA1	P11745	407 aa	Known RBP	2.54	□□□□□ -2
SNU114	YKL173W	CKA1	P15790	372 aa		2.54	□□□□□ -2
SNU114	YKL173W	YCK1	P23291	538 aa		2.54	□□□□□ -2
SNU114	YKL173W	BYE1	P36106	594 aa		2.54	□□□□□ -2
SNU114	YKL173W	MUM2	P38236	366 aa		2.54	□□□□□ -2
SNU114	YKL173W	FSH1	P38777	243 aa	Known RBP	2.54	□□□□□ -2
SNU114	YKL173W	SFB3	P38810	929 aa		2.54	□□□□□ -2
SNU114	YKL173W	SAP4	P53036	818 aa		2.54	□□□□□ -2
SNU114	YKL173W	DSD1	P53095	428 aa		2.54	□□□□□ -2
SNU114	YKL173W	PIL1	P53252	339 aa	Known RBP	2.54	□□□□□ -2
SNU114	YKL173W	ATG4	P53867	494 aa		2.54	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms