RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Igkv4-61A0A0G2JH00 117 aa11.28□□□□□ -0.6
Shh-201ENSMUST00000002708 Acyp1P56376 99 aa11.28□□□□□ -0.6
Shh-201ENSMUST00000002708 Ighv1-56A0A0A6YXG2 117 aa11.27□□□□□ -0.61
Shh-201ENSMUST00000002708 Defa4P28311 92 aa11.27□□□□□ -0.61
Shh-201ENSMUST00000002708 Defa7P50705 93 aa11.27□□□□□ -0.61
Shh-201ENSMUST00000002708 Wfdc12Q9JHY3 85 aa11.27□□□□□ -0.61
Shh-201ENSMUST00000002708 Ighv1-59A0A0A6YXE0 117 aa11.26□□□□□ -0.61
Shh-201ENSMUST00000002708 C530025M09RikF6RGA8 229 aa11.26□□□□□ -0.61
Shh-201ENSMUST00000002708 D730001G18RikA0A087WQU7 115 aa11.25□□□□□ -0.61
Shh-201ENSMUST00000002708 Gm10320E9PW43 113 aa11.25□□□□□ -0.61
Shh-201ENSMUST00000002708 CrygdP04342 174 aa11.25□□□□□ -0.61
Shh-201ENSMUST00000002708 CrygeQ03740 174 aa11.25□□□□□ -0.61
Shh-201ENSMUST00000002708 Tenm1Q9WTS4 2731 aa11.25□□□□□ -0.61
Shh-201ENSMUST00000002708 4930518I15RikQ3V2W7 57 aa11.24□□□□□ -0.61
Shh-201ENSMUST00000002708 A830031A19RikQ8BNT5 113 aa11.24□□□□□ -0.61
Shh-201ENSMUST00000002708 Trbv13-2A0A140T8N6 113 aa11.22□□□□□ -0.61
Shh-201ENSMUST00000002708 Hist1h4aP62806 103 aaKnown RBP11.22□□□□□ -0.61
Shh-201ENSMUST00000002708 Defa21Q8C1P2 93 aa11.22□□□□□ -0.61
Shh-201ENSMUST00000002708 Trav9n-4A0A075B631 113 aa11.22□□□□□ -0.61
Shh-201ENSMUST00000002708 Gm10845Q3UNY9 185 aa11.22□□□□□ -0.61
Shh-201ENSMUST00000002708 Smim26Q3V460 107 aa11.21□□□□□ -0.61
Shh-201ENSMUST00000002708 Tmem223Q9CQE2 199 aaKnown RBP11.21□□□□□ -0.61
Shh-201ENSMUST00000002708 Igkv8-18A0A0B4J1J3 123 aa11.21□□□□□ -0.62
Shh-201ENSMUST00000002708 Gm5153P01627 120 aa11.21□□□□□ -0.62
Shh-201ENSMUST00000002708 Igkv4-58A0A0G2JGI6 119 aa11.2□□□□□ -0.62
Shh-201ENSMUST00000002708 Dad1P61804 113 aa11.2□□□□□ -0.62
Shh-201ENSMUST00000002708 Higd2aQ9CQJ1 106 aa11.2□□□□□ -0.62
Shh-201ENSMUST00000002708 Q9DAA7 145 aa11.2□□□□□ -0.62
Shh-201ENSMUST00000002708 Klk11Q9QYN3 276 aa11.2□□□□□ -0.62
Shh-201ENSMUST00000002708 Itpr2Q9Z329 2701 aa11.2□□□□□ -0.62
Shh-201ENSMUST00000002708 E130208F15RikQ3UPV3 143 aa11.19□□□□□ -0.62
Shh-201ENSMUST00000002708 Rpl18aP62717 176 aaKnown RBP11.19□□□□□ -0.62
Shh-201ENSMUST00000002708 Sprr1bQ62267 153 aa11.18□□□□□ -0.62
Shh-201ENSMUST00000002708 Gm10518F6UQQ9 182 aa11.17□□□□□ -0.62
Shh-201ENSMUST00000002708 Fam19a1Q7TPG8 133 aa11.17□□□□□ -0.62
Shh-201ENSMUST00000002708 MplkipQ9D011 178 aa11.17□□□□□ -0.62
Shh-201ENSMUST00000002708 Igkv8-16A0A0G2JDG9 121 aa11.16□□□□□ -0.62
Shh-201ENSMUST00000002708 Igkv3-9A0A140T8P4 119 aa11.16□□□□□ -0.62
Shh-201ENSMUST00000002708 Fam229bQ8CF36 80 aa11.15□□□□□ -0.62
Shh-201ENSMUST00000002708 Tmem86bQ497J1 226 aa11.15□□□□□ -0.62
Shh-201ENSMUST00000002708 Csdc2Q91YQ3 154 aa11.15□□□□□ -0.62
Shh-201ENSMUST00000002708 Gm9903Q8C9Y8 129 aa11.14□□□□□ -0.63
Shh-201ENSMUST00000002708 Krtap11-1E9Q2E9 183 aa11.14□□□□□ -0.63
Shh-201ENSMUST00000002708 Cmc4Q61908 68 aa11.13□□□□□ -0.63
Shh-201ENSMUST00000002708 AtrQ9JKK8 2635 aa11.13□□□□□ -0.63
Shh-201ENSMUST00000002708 ApcQ61315 2845 aa11.13□□□□□ -0.63
Shh-201ENSMUST00000002708 Igkv8-21A0A140T8P7 120 aa11.13□□□□□ -0.63
Shh-201ENSMUST00000002708 EnhoQ8K1D8 76 aa11.13□□□□□ -0.63
Shh-201ENSMUST00000002708 Ntn5Q3UQ22 452 aa11.13□□□□□ -0.63
Shh-201ENSMUST00000002708 Igkv8-24A0A140T8P5 121 aa11.12□□□□□ -0.63
Shh-201ENSMUST00000002708 Tmem243B2RVB9 118 aa11.12□□□□□ -0.63
Shh-201ENSMUST00000002708 Psors1c2Q80ZC9 134 aa11.12□□□□□ -0.63
Shh-201ENSMUST00000002708 Igkv8-27A0A0G2JF28 120 aa11.12□□□□□ -0.63
Shh-201ENSMUST00000002708 E130218I03RikA0A0U1RNU5 63 aa11.12□□□□□ -0.63
Shh-201ENSMUST00000002708 Igkv8-30A0A140T8M3 121 aa11.12□□□□□ -0.63
Shh-201ENSMUST00000002708 A0A286YCN5 57 aa11.11□□□□□ -0.63
Shh-201ENSMUST00000002708 Tmem254aP0DN89 123 aa11.11□□□□□ -0.63
Shh-201ENSMUST00000002708 Tmem254bP0DN90 123 aa11.11□□□□□ -0.63
Shh-201ENSMUST00000002708 Tmem254cP0DN91 123 aa11.11□□□□□ -0.63
Shh-201ENSMUST00000002708 Reg3dQ9QUS9 175 aa11.11□□□□□ -0.63
Shh-201ENSMUST00000002708 Klk9Q32M27 251 aa11.11□□□□□ -0.63
Shh-201ENSMUST00000002708 Serp2Q6TAW2 65 aa11.09□□□□□ -0.63
Shh-201ENSMUST00000002708 PolqQ8CGS6 2544 aa11.08□□□□□ -0.64
Shh-201ENSMUST00000002708 Defa23Q5G866 93 aa11.08□□□□□ -0.64
Shh-201ENSMUST00000002708 Notch2O35516 2470 aa11.08□□□□□ -0.64
Shh-201ENSMUST00000002708 Ighv2-9A0A075B5Q5 116 aa11.08□□□□□ -0.64
Shh-201ENSMUST00000002708 Ighv10-3A0A075B5T6 119 aa11.08□□□□□ -0.64
Shh-201ENSMUST00000002708 Gm9805F6YK59 57 aa11.07□□□□□ -0.64
Shh-201ENSMUST00000002708 CnbpP53996 178 aaKnown RBP11.06□□□□□ -0.64
Shh-201ENSMUST00000002708 Ube2d4D3YUH6 135 aa11.05□□□□□ -0.64
Shh-201ENSMUST00000002708 Ormdl1Q921I0 153 aa11.05□□□□□ -0.64
Shh-201ENSMUST00000002708 PtprqP0C5E4 2300 aa11.05□□□□□ -0.64
Shh-201ENSMUST00000002708 P01819 144 aa11.04□□□□□ -0.64
Shh-201ENSMUST00000002708 Igkv8-26A0A075B5N5 123 aa11.04□□□□□ -0.64
Shh-201ENSMUST00000002708 Gm10308Q9CVR5 141 aa11.03□□□□□ -0.64
Shh-201ENSMUST00000002708 Igkv3-1A0A075B5P1 119 aa11.03□□□□□ -0.64
Shh-201ENSMUST00000002708 Gm7138L7N2C3 230 aa11.03□□□□□ -0.64
Shh-201ENSMUST00000002708 Lamtor3O88653 124 aa11.03□□□□□ -0.64
Shh-201ENSMUST00000002708 Gm3238W4VSP7 230 aa11.03□□□□□ -0.64
Shh-201ENSMUST00000002708 Notch1Q01705 2531 aa11.03□□□□□ -0.64
Shh-201ENSMUST00000002708 Gm17689B3GLJ4 109 aa11.02□□□□□ -0.65
Shh-201ENSMUST00000002708 Defb37Q7TMD2 62 aa11.02□□□□□ -0.65
Shh-201ENSMUST00000002708 Cox7bP56393 80 aa11.02□□□□□ -0.65
Shh-201ENSMUST00000002708 Msrb1Q9JLC3 116 aa11.02□□□□□ -0.65
Shh-201ENSMUST00000002708 Stab1Q8R4Y4 2571 aa11.02□□□□□ -0.65
Shh-201ENSMUST00000002708 Ighv8-13A0A075B5Y0 101 aa11.01□□□□□ -0.65
Shh-201ENSMUST00000002708 4930556J24RikQ9D4U7 146 aa11.01□□□□□ -0.65
Shh-201ENSMUST00000002708 Tcl1b3P56842 122 aa11□□□□□ -0.65
Shh-201ENSMUST00000002708 Ighv13-2A0A0A6YWN3 119 aa11□□□□□ -0.65
Shh-201ENSMUST00000002708 Ubl5Q9EPV8 73 aa11□□□□□ -0.65
Shh-201ENSMUST00000002708 Hivep1Q03172 2688 aa11□□□□□ -0.65
Shh-201ENSMUST00000002708 B230307C23RikQ8BLB2 64 aa10.99□□□□□ -0.65
Shh-201ENSMUST00000002708 Igkv1-88A0A140T8N1 120 aa10.99□□□□□ -0.65
Shh-201ENSMUST00000002708 Fam19a3Q7TPG6 132 aa10.99□□□□□ -0.65
Shh-201ENSMUST00000002708 Mrpl52Q9D0Y8 121 aa10.97□□□□□ -0.65
Shh-201ENSMUST00000002708 AY074887Q8R5F9 132 aa10.97□□□□□ -0.65
Shh-201ENSMUST00000002708 Gm11213A0A1B0GR83 88 aa10.96□□□□□ -0.65
Shh-201ENSMUST00000002708 Snhg11Q4G0K9 87 aa10.96□□□□□ -0.65
Shh-201ENSMUST00000002708 A730071L15RikQ8C4X0 137 aa10.96□□□□□ -0.66
Shh-201ENSMUST00000002708 Ighv10-1A0A0B4J1J6 119 aa10.95□□□□□ -0.66
Retrieved 100 of 22,080 RNA–protein pairs in 46.6 ms