RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Gm44965A0A0N4SVR3 59 aa12.55□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Edn2P22389 175 aa12.55□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Znf706Q9D115 76 aaKnown RBP12.55□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 EnhoQ8K1D8 76 aa12.55□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Ighv8-5A0A0A6YY60 119 aa12.55□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Q9D131 166 aa12.55□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Usp9yF8VPU6 2556 aa12.55□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Sprr3O09116 238 aa12.54□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Myo18bE9PV66 2605 aa12.54□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Trav13-1A0A075B644 110 aa12.54□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Gm19935A0A1B0GSF9 52 aa12.54□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 BaalcQ8VHV1 145 aa12.54□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Gm10577Q3UDV9 132 aa12.53□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Tcte2E9PY37 120 aa12.53□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Wfdc10Q3V2J9 124 aa12.53□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 CstadQ9D245 104 aa12.53□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Gm6034E9Q101 117 aa12.53□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Cdpf1Q8R3A2 119 aa12.53□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 P06320 134 aa12.52□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Map6d1Q14BB9 191 aa12.52□□□□□ -0.4
Ccdc88a-201ENSMUST00000040182 Gm9949Q8C9F4 104 aa12.51□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 PpdpfQ9CR37 115 aa12.51□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 A830031A19RikQ8BNT5 113 aa12.51□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 NpwA0A1L1STR8 176 aa12.51□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 Ighv1-62-1A0A075B5U3 116 aa12.51□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 P01820 115 aa12.51□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 C1qcQ02105 246 aa12.51□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 5730596B20RikQ8BQ08 205 aa12.51□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 P84750 121 aa12.5□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 Q9CX25 107 aa12.5□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 Wdr38Q9D994 303 aa12.5□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 Gm12689Q8BQU9 117 aa12.5□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 Gm10647E9Q8X0 124 aa12.5□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 B230359F08RikA0A0B4J1K3 109 aa12.5□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 P84751 237 aa12.5□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 Ighv1-63A0A075B5X2 117 aa12.5□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 FshbQ60687 130 aa12.49□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 Igkv8-30A0A140T8M3 121 aa12.49□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 H2al1mQ9DAD9 105 aa12.48□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 Gm17359A0A0G2JEB7 487 aa12.47□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 P01658 132 aa12.47□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 P01659 112 aa12.47□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 Gm9913Q8BQQ2 135 aa12.47□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 Q9DAQ5 155 aa12.47□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 E130114P18RikF6S0S7 154 aa12.47□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 Chchd7Q8K2Q5 85 aa12.46□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 A130051J06RikQ8CAU1 227 aa12.46□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 MsmpB1AWI6 139 aa12.46□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 Gm10322F7D7I4 111 aa12.46□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 Klk5Q9D140 293 aa12.46□□□□□ -0.41
Ccdc88a-201ENSMUST00000040182 Wfdc15aQ8BH89 80 aa12.46□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Spry4Q9WTP2 300 aa12.45□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 P01728 117 aa12.45□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 PlaurP35456 327 aa12.45□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Ighv3-3A0A0A6YWL2 116 aa12.44□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Col4a4Q9QZR9 1682 aa12.44□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 BC107364E9Q5A2 140 aa12.44□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Obox2E9PXV9 151 aa12.43□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Gm20708H3BKF4 155 aa12.43□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 U90926O08546 118 aa12.43□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Pla2g2dQ9WVF6 144 aa12.43□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Sh2d1aO88890 126 aa12.43□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 P18527 97 aa12.43□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Apoc4Q61268 124 aa12.43□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Serp1Q9Z1W5 66 aa12.43□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Igkv1-117A0A140T8M0 119 aa12.42□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Pla2g2aP31482 146 aa12.42□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Trav14-1A0A0G2JF94 121 aa12.42□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Ighv1-66A0A075B5X5 117 aa12.41□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Ly6hQ9WUC3 139 aa12.41□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 FcorP0DJI6 106 aa12.41□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Wipf1Q8K1I7 493 aa12.41□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Q9D8Q6 235 aa12.4□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Nbeal1E9PYP2 2688 aa12.4□□□□□ -0.42
Ccdc88a-201ENSMUST00000040182 Ighv10-3A0A075B5T6 119 aa12.39□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 A0A286YE49 62 aa12.39□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 Ypel4Q65Z93 127 aa12.39□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 H2al1kJ3QP08 105 aa12.38□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 Col27a1Q5QNQ9 1845 aa12.38□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 Rbx1P62878 108 aa12.38□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 Igkv3-12A0A140T8P0 119 aa12.38□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 Gm4707V9GXN5 68 aa12.38□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 Smim1P0C8K7 78 aa12.37□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 Col8a2P25318 699 aa12.37□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 Ighv1-59A0A0A6YXE0 117 aa12.37□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 CnfnQ6PCW6 111 aa12.37□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 4930564D02RikQ9D4S4 103 aa12.36□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 Rnf185Q91YT2 192 aa12.36□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 Ube2d2P62838 147 aa12.36□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 Ighv2-9-1A0A075B697 116 aa12.35□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 Igkv1-110A0A0B4J1I0 119 aa12.35□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 9230102O04RikA2ASX7 82 aa12.35□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 Znf239P24399 201 aa12.35□□□□□ -0.43
Ccdc88a-201ENSMUST00000040182 Ighv2-3A0A075B696 115 aa12.33□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 P01823 113 aa12.33□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 Epg5Q80TA9 2572 aa12.33□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 P01747 120 aa12.33□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 Gm6899Q3USS0 134 aa12.32□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 Gm11011D3Z3L9 86 aa12.31□□□□□ -0.44
Ccdc88a-201ENSMUST00000040182 Rpl28P41105 137 aaKnown RBP12.31□□□□□ -0.44
Retrieved 100 of 22,080 RNA–protein pairs in 40.3 ms