Protein–RNA interactions for Protein: A0A075B644

Trav13-1, T cell receptor alpha variable 13-1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13-1A0A075B644 Gm25239-201ENSMUST00000174915 86 ntBASIC26.53■■□□□ 1.84
Trav13-1A0A075B644 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Trav13-1A0A075B644 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Trav13-1A0A075B644 Gm15042-201ENSMUST00000120212 883 ntBASIC23.28■■□□□ 1.32
Trav13-1A0A075B644 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trav13-1A0A075B644 Gm24109-201ENSMUST00000175489 103 ntBASIC22.95■■□□□ 1.26
Trav13-1A0A075B644 Gm15045-201ENSMUST00000117359 883 ntBASIC22.72■■□□□ 1.23
Trav13-1A0A075B644 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Trav13-1A0A075B644 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Trav13-1A0A075B644 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Trav13-1A0A075B644 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Trav13-1A0A075B644 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
Trav13-1A0A075B644 Gm23366-201ENSMUST00000175022 89 ntBASIC22.21■■□□□ 1.15
Trav13-1A0A075B644 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Trav13-1A0A075B644 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trav13-1A0A075B644 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trav13-1A0A075B644 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC21.59■■□□□ 1.05
Trav13-1A0A075B644 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trav13-1A0A075B644 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Trav13-1A0A075B644 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trav13-1A0A075B644 AC153911.1-202ENSMUST00000218534 1034 ntBASIC21.38■■□□□ 1.01
Trav13-1A0A075B644 Psd-208ENSMUST00000224556 2034 ntBASIC21.38■■□□□ 1.01
Trav13-1A0A075B644 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav13-1A0A075B644 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Trav13-1A0A075B644 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trav13-1A0A075B644 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC21.25■□□□□ 0.99
Trav13-1A0A075B644 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trav13-1A0A075B644 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trav13-1A0A075B644 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav13-1A0A075B644 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
Trav13-1A0A075B644 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21.1■□□□□ 0.97
Trav13-1A0A075B644 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trav13-1A0A075B644 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trav13-1A0A075B644 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trav13-1A0A075B644 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trav13-1A0A075B644 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trav13-1A0A075B644 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC20.94■□□□□ 0.94
Trav13-1A0A075B644 Gm25238-201ENSMUST00000174914 89 ntBASIC20.89■□□□□ 0.93
Trav13-1A0A075B644 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trav13-1A0A075B644 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC20.77■□□□□ 0.92
Trav13-1A0A075B644 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trav13-1A0A075B644 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trav13-1A0A075B644 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trav13-1A0A075B644 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Trav13-1A0A075B644 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
Trav13-1A0A075B644 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC20.47■□□□□ 0.87
Trav13-1A0A075B644 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC20.42■□□□□ 0.86
Trav13-1A0A075B644 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Trav13-1A0A075B644 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trav13-1A0A075B644 Gm27325-201ENSMUST00000175467 74 ntBASIC20.38■□□□□ 0.85
Trav13-1A0A075B644 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trav13-1A0A075B644 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC20.28■□□□□ 0.84
Trav13-1A0A075B644 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav13-1A0A075B644 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav13-1A0A075B644 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC20.23■□□□□ 0.83
Trav13-1A0A075B644 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC20.2■□□□□ 0.82
Trav13-1A0A075B644 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Trav13-1A0A075B644 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC20.15■□□□□ 0.82
Trav13-1A0A075B644 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav13-1A0A075B644 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav13-1A0A075B644 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav13-1A0A075B644 Gm25262-201ENSMUST00000174934 133 ntBASIC20.05■□□□□ 0.8
Trav13-1A0A075B644 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav13-1A0A075B644 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trav13-1A0A075B644 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trav13-1A0A075B644 Rab21-202ENSMUST00000218831 843 ntBASIC19.99■□□□□ 0.79
Trav13-1A0A075B644 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trav13-1A0A075B644 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
Trav13-1A0A075B644 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trav13-1A0A075B644 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC19.93■□□□□ 0.78
Trav13-1A0A075B644 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trav13-1A0A075B644 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Trav13-1A0A075B644 Gm10524-201ENSMUST00000181931 1893 ntBASIC19.88■□□□□ 0.77
Trav13-1A0A075B644 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trav13-1A0A075B644 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Trav13-1A0A075B644 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trav13-1A0A075B644 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Trav13-1A0A075B644 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC19.8■□□□□ 0.76
Trav13-1A0A075B644 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trav13-1A0A075B644 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trav13-1A0A075B644 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trav13-1A0A075B644 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trav13-1A0A075B644 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trav13-1A0A075B644 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trav13-1A0A075B644 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trav13-1A0A075B644 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC19.68■□□□□ 0.74
Trav13-1A0A075B644 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Trav13-1A0A075B644 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC19.66■□□□□ 0.74
Trav13-1A0A075B644 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC19.66■□□□□ 0.74
Trav13-1A0A075B644 CT025624.2-201ENSMUST00000223609 1909 ntBASIC19.66■□□□□ 0.74
Trav13-1A0A075B644 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trav13-1A0A075B644 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Trav13-1A0A075B644 Gm42596-201ENSMUST00000196305 1958 ntBASIC19.58■□□□□ 0.73
Trav13-1A0A075B644 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trav13-1A0A075B644 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC19.55■□□□□ 0.72
Trav13-1A0A075B644 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trav13-1A0A075B644 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trav13-1A0A075B644 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trav13-1A0A075B644 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC19.51■□□□□ 0.71
Trav13-1A0A075B644 Gm26115-201ENSMUST00000175605 87 ntBASIC19.51■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms