Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gm25239-201ENSMUST00000174915 86 ntBASIC40.39■■■■■ 4.06
Col27a1Q5QNQ9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC37.79■■■■□ 3.64
Col27a1Q5QNQ9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC36.87■■■■□ 3.49
Col27a1Q5QNQ9 Gm24109-201ENSMUST00000175489 103 ntBASIC35.41■■■■□ 3.26
Col27a1Q5QNQ9 Gm15042-201ENSMUST00000120212 883 ntBASIC34.77■■■■□ 3.16
Col27a1Q5QNQ9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC34.21■■■■□ 3.07
Col27a1Q5QNQ9 Gm15045-201ENSMUST00000117359 883 ntBASIC34.11■■■■□ 3.05
Col27a1Q5QNQ9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC34.06■■■■□ 3.04
Col27a1Q5QNQ9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34.03■■■■□ 3.04
Col27a1Q5QNQ9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC33.95■■■■□ 3.02
Col27a1Q5QNQ9 Gm23366-201ENSMUST00000175022 89 ntBASIC33.6■■■□□ 2.97
Col27a1Q5QNQ9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC33.18■■■□□ 2.9
Col27a1Q5QNQ9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC32.77■■■□□ 2.84
Col27a1Q5QNQ9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC32.74■■■□□ 2.83
Col27a1Q5QNQ9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
Col27a1Q5QNQ9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Col27a1Q5QNQ9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
Col27a1Q5QNQ9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
Col27a1Q5QNQ9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC32.11■■■□□ 2.73
Col27a1Q5QNQ9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
Col27a1Q5QNQ9 Gm25238-201ENSMUST00000174914 89 ntBASIC32.06■■■□□ 2.72
Col27a1Q5QNQ9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC32■■■□□ 2.71
Col27a1Q5QNQ9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC31.46■■■□□ 2.63
Col27a1Q5QNQ9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Col27a1Q5QNQ9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Col27a1Q5QNQ9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
Col27a1Q5QNQ9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
Col27a1Q5QNQ9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Col27a1Q5QNQ9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Col27a1Q5QNQ9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC30.94■■■□□ 2.54
Col27a1Q5QNQ9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC30.9■■■□□ 2.54
Col27a1Q5QNQ9 Gm25262-201ENSMUST00000174934 133 ntBASIC30.86■■■□□ 2.53
Col27a1Q5QNQ9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Col27a1Q5QNQ9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC30.8■■■□□ 2.52
Col27a1Q5QNQ9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.71■■■□□ 2.51
Col27a1Q5QNQ9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC30.57■■■□□ 2.48
Col27a1Q5QNQ9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC30.56■■■□□ 2.48
Col27a1Q5QNQ9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
Col27a1Q5QNQ9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC30.53■■■□□ 2.48
Col27a1Q5QNQ9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Col27a1Q5QNQ9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC30.47■■■□□ 2.47
Col27a1Q5QNQ9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Col27a1Q5QNQ9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC30.44■■■□□ 2.46
Col27a1Q5QNQ9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
Col27a1Q5QNQ9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Col27a1Q5QNQ9 Gm26115-201ENSMUST00000175605 87 ntBASIC30.4■■■□□ 2.46
Col27a1Q5QNQ9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC30.35■■■□□ 2.45
Col27a1Q5QNQ9 Gm27325-201ENSMUST00000175467 74 ntBASIC30.35■■■□□ 2.45
Col27a1Q5QNQ9 Gm8109-201ENSMUST00000194076 746 ntBASIC30.31■■■□□ 2.44
Col27a1Q5QNQ9 Rab21-202ENSMUST00000218831 843 ntBASIC30.13■■■□□ 2.41
Col27a1Q5QNQ9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Col27a1Q5QNQ9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC30.07■■■□□ 2.4
Col27a1Q5QNQ9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Col27a1Q5QNQ9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Col27a1Q5QNQ9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
Col27a1Q5QNQ9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Col27a1Q5QNQ9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC29.86■■■□□ 2.37
Col27a1Q5QNQ9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Col27a1Q5QNQ9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC29.71■■■□□ 2.35
Col27a1Q5QNQ9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
Col27a1Q5QNQ9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC29.65■■■□□ 2.34
Col27a1Q5QNQ9 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC29.63■■■□□ 2.33
Col27a1Q5QNQ9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
Col27a1Q5QNQ9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC29.57■■■□□ 2.32
Col27a1Q5QNQ9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC29.56■■■□□ 2.32
Col27a1Q5QNQ9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC29.53■■■□□ 2.32
Col27a1Q5QNQ9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
Col27a1Q5QNQ9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
Col27a1Q5QNQ9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC29.38■■■□□ 2.29
Col27a1Q5QNQ9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC29.37■■■□□ 2.29
Col27a1Q5QNQ9 Gm17082-201ENSMUST00000166043 1091 ntBASIC29.31■■■□□ 2.28
Col27a1Q5QNQ9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Col27a1Q5QNQ9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC29.21■■■□□ 2.27
Col27a1Q5QNQ9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
Col27a1Q5QNQ9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC29.15■■■□□ 2.26
Col27a1Q5QNQ9 Gm24804-201ENSMUST00000174982 85 ntBASIC29.14■■■□□ 2.26
Col27a1Q5QNQ9 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Col27a1Q5QNQ9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC29.03■■■□□ 2.24
Col27a1Q5QNQ9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Col27a1Q5QNQ9 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC28.95■■■□□ 2.23
Col27a1Q5QNQ9 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC28.94■■■□□ 2.22
Col27a1Q5QNQ9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC28.91■■■□□ 2.22
Col27a1Q5QNQ9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC28.88■■■□□ 2.21
Col27a1Q5QNQ9 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC28.85■■■□□ 2.21
Col27a1Q5QNQ9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC28.84■■■□□ 2.21
Col27a1Q5QNQ9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.83■■■□□ 2.21
Col27a1Q5QNQ9 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC28.82■■■□□ 2.2
Col27a1Q5QNQ9 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Col27a1Q5QNQ9 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Col27a1Q5QNQ9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC28.79■■■□□ 2.2
Col27a1Q5QNQ9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.79■■■□□ 2.2
Col27a1Q5QNQ9 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC28.77■■■□□ 2.2
Col27a1Q5QNQ9 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Col27a1Q5QNQ9 Zfp131-205ENSMUST00000223812 663 ntBASIC28.76■■■□□ 2.19
Col27a1Q5QNQ9 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC28.76■■■□□ 2.19
Col27a1Q5QNQ9 Psd-208ENSMUST00000224556 2034 ntBASIC28.73■■■□□ 2.19
Col27a1Q5QNQ9 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Col27a1Q5QNQ9 Gm27322-201ENSMUST00000184007 104 ntBASIC28.71■■■□□ 2.19
Col27a1Q5QNQ9 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Col27a1Q5QNQ9 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC28.67■■■□□ 2.18
Retrieved 100 of 76,532 protein–RNA pairs in 59.5 ms