RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 PpdpfQ9CR37 115 aa11.88□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 GhrhP16043 103 aa11.88□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Gm10295Q8CCF3 114 aa11.88□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Igkv8-34A0A0G2JDU0 121 aa11.87□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Defb47Q30KN1 79 aa11.87□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Dand5Q76LW6 185 aa11.87□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Q9D131 166 aa11.87□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Cfap54Q8C6S9 3106 aa11.87□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Ndufa1O35683 70 aa11.87□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Odf3l1Q810P2 275 aa11.87□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Pla2g2dQ9WVF6 144 aa11.86□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Igkv6-13A0A0G2JGY3 119 aa11.86□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 P01820 115 aa11.86□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Obox8V9GWY9 217 aa11.86□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Igkv4-54A0A0G2JES9 117 aa11.86□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Rmi2Q3UPE3 149 aa11.86□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Ighv2-7A0A075B5Q8 116 aa11.86□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Lyrm9Q3UN90 78 aa11.86□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 GfyJ3KML8 504 aa11.85□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Igkv4-72A0A0B4J1I4 117 aa11.85□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Trav4d-3A0A075B625 110 aa11.85□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Vsig4F6TUL9 280 aa11.85□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Ndufb4Q9CQC7 129 aa11.85□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 P01753 117 aa11.84□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 CtrlQ9ER05 264 aa11.84□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Ndufa12Q7TMF3 145 aaKnown RBP11.84□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Chd7A2AJK6 2986 aaKnown RBP11.84□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 C920008G01RikA0A0B4J1N1 112 aa11.84□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 BC107364E9Q5A2 140 aa11.84□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Atp5eP56382 52 aa11.84□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Foxc1Q61572 553 aa11.84□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Timm17aQ9Z0V8 171 aa11.83□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Sprr3O09116 238 aa11.83□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Sslp1Q3UN54 99 aa11.82□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Trav9d-4A0A0G2JG37 103 aa11.82□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Zfp951A0A087WRH0 451 aa11.82□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Znf239P24399 201 aa11.82□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Chchd5Q9CQP3 110 aa11.82□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Trav9n-2A0A0G2JDP3 113 aa11.82□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Ovol3D3YYM0 189 aa11.81□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 MplkipQ9D011 178 aa11.81□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Spink12Q9D256 87 aa11.81□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Pkd1l2Q7TN88 2461 aa11.81□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Glrp1E9Q9S8 174 aa11.81□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Cd27P41272 250 aa11.81□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Cryba4Q9JJV0 196 aa11.81□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 SelenowP63300 88 aa11.81□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Ndufa4l2Q4FZG9 87 aa11.81□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 ColqO35348 457 aa11.8□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Tmem213Q08EA8 116 aa11.8□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Lrrk2Q5S006 2527 aa11.8□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Ighv12-3A0A075B5T1 117 aa11.8□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 1500011B03RikQ3TTH7 73 aa11.8□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Gm20730A0A075B5J6 119 aa11.8□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Igkv4-79A0A075B5L8 119 aa11.8□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Tmem243B2RVB9 118 aa11.8□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 1810032O08RikE9PZV8 113 aa11.8□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Nop10Q9CQS2 64 aa11.8□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Ighv1-53A0A075B5W3 117 aa11.8□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Ptpn13Q64512 2453 aa11.8□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Edn2P22389 175 aa11.79□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Tmem258P61166 79 aa11.79□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Smim20D3Z7Q2 69 aa11.79□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Znf575Q3TXZ1 239 aa11.79□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Gm26566Q8CAC1 153 aa11.79□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Igkv4-69A0A0B4J1I6 116 aa11.79□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Egr2P08152 470 aa11.79□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Trav4-3A0A0B4J1K1 110 aa11.79□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Rpl39P62892 51 aa11.78□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Ndufs7Q9DC70 224 aa11.78□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 BC048562Q80ZQ7 204 aa11.78□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Defb29Q8BGW9 78 aa11.78□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Igkv4-78A0A0A6YYE5 119 aa11.78□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Gm20726G3UX18 150 aa11.78□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Pla2g2eQ9QUL3 142 aa11.78□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Unc80Q8BLN6 3261 aa11.77□□□□□ -0.52
Ccdc88b-201ENSMUST00000113440 Gm42674D3YUT9 64 aa11.77□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Lst1O08843 95 aa11.77□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 AW146154Q3TPQ7 468 aa11.76□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Dscaml1Q4VA61 2053 aa11.76□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 OdaphJ3QNT8 126 aa11.76□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Trav7-6A0A075B640 112 aa11.76□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Gm5878E9PUB3 99 aa11.76□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Prp2P05143 317 aa11.76□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Q99M08 65 aa11.75□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Snai3Q9QY31 287 aa11.75□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Pglyrp1O88593 182 aa11.75□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Ankhd1E9PUR0 2548 aaKnown RBP11.75□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Tcte2E9PY37 120 aa11.75□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Odf1Q61999 247 aa11.75□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Trbv16A0A0B4J1H3 115 aa11.74□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Rnase1P00683 149 aa11.74□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 PemtQ61907 199 aa11.74□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 P01747 120 aa11.74□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Trav9d-3A0A075B695 113 aa11.74□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Ighv1-82A0A0G2JEU7 117 aa11.74□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Fgf6P21658 208 aa11.74□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Fam19a4Q7TPG5 135 aa11.74□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Col5a1O88207 1838 aa11.73□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Fhl1P97447 280 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 22,080 RNA–protein pairs in 138.5 ms