RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Gm10251J3QPM5 127 aa12.91□□□□□ -0.34
Ccdc88a-201ENSMUST00000040182 Gm2916Q9D9B9 127 aa12.91□□□□□ -0.34
Ccdc88a-201ENSMUST00000040182 Ndufb4Q9CQC7 129 aa12.9□□□□□ -0.34
Ccdc88a-201ENSMUST00000040182 Gm15217A2CG07 155 aa12.9□□□□□ -0.34
Ccdc88a-201ENSMUST00000040182 Vpreb3D3Z6J4 130 aa12.9□□□□□ -0.34
Ccdc88a-201ENSMUST00000040182 Q80X32 188 aaKnown RBP12.9□□□□□ -0.34
Ccdc88a-201ENSMUST00000040182 Gm17677B3GLJ5 116 aa12.9□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Gm26602M0QWA4 95 aa12.89□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 MifP34884 115 aaKnown RBP12.89□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Vopp1Q8R1C3 172 aa12.89□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Trav7-6A0A075B640 112 aa12.89□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 P01750 117 aa12.88□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Ang3P97802 145 aa12.88□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Spata25Q9DA57 226 aa12.88□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Cd24P24807 76 aa12.88□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Camk2n2Q78WH7 79 aa12.88□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Ptpn13Q64512 2453 aa12.88□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Obox8V9GWY9 217 aa12.88□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Iglc1A0A0G2JE99 106 aa12.88□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 P01843 105 aa12.88□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 1700012A03RikQ9DAF1 130 aa12.88□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Gm17455G3UW87 128 aa12.88□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 LitafQ9JLJ0 161 aa12.87□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Usp9xP70398 2559 aaKnown RBP12.87□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Ighv13-2A0A0A6YWN3 119 aa12.86□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Tcl1b3P56842 122 aa12.86□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Fancd2osQ9D4K4 178 aa12.86□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Nxph4G3X9N5 304 aa12.86□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Trav9d-3A0A075B695 113 aa12.85□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Ube2aQ9Z255 152 aa12.85□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Gm7257D3YX25 99 aa12.85□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Trav9-2A0A075B647 113 aa12.85□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Trav9-4A0A0B4J1K2 113 aa12.85□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Mrpl35Q9CQL6 188 aa12.85□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Col5a1O88207 1838 aa12.85□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 NpyP57774 97 aa12.84□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Tnfrsf23Q9ER63 176 aa12.84□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Gm20604F8WIA3 75 aa12.84□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Ighv3-1A0A075B5S6 116 aa12.84□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Gm28539A0A087WSL9 92 aa12.84□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 P01753 117 aa12.84□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Ly6gP35461 111 aa12.84□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Ndufb1P0DN34 57 aa12.84□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 NpbQ8K4P1 119 aa12.84□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Piezo1E2JF22 2547 aa12.84□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Ighv2-6A0A075B6A7 116 aa12.84□□□□□ -0.35
Ccdc88a-201ENSMUST00000040182 Gm15128A2ADW8 449 aa12.83□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Ppp1r32Q148A4 427 aa12.83□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Kmt2bO08550 2713 aa12.83□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 4933414I15RikQ9D4D5 133 aa12.83□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Prok2Q9QXU7 128 aa12.83□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Hoxb4P10284 250 aa12.82□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Gm14137Q8CE97 175 aa12.82□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Klk9Q32M27 251 aa12.82□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Tfpi2O35536 230 aa12.82□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Fhl1P97447 280 aaKnown RBP12.82□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 P01729 129 aa12.82□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 CrygdP04342 174 aa12.82□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Fhl3Q9R059 289 aa12.82□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Igkv3-10A0A0G2JGN0 119 aa12.81□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 C920008G01RikA0A0B4J1N1 112 aa12.81□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Spink4O35679 86 aa12.81□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Rpl18aP62717 176 aaKnown RBP12.81□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 E030018B13RikJ3QMS9 113 aa12.81□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Gm10638F6QEG2 257 aa12.81□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Cfap126Q6P8X9 189 aa12.81□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Alms1Q8K4E0 3251 aa12.81□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Piezo2Q8CD54 2822 aa12.8□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Ighv1-53A0A075B5W3 117 aa12.8□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Ighv1-11A0A0A6YWI9 117 aa12.8□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 P01748 117 aa12.8□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Defb18Q30KP5 85 aa12.8□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Igkv3-4A0A140T8Q4 119 aa12.8□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 P04943 107 aa12.8□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Q8K1L6 76 aa12.79□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Mapk1ip1lQ8BH93 242 aa12.79□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Gm17577J3QNF7 156 aa12.79□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Gm5468Q8C3D3 155 aa12.79□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Gm3618D3Z4P5 127 aa12.78□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Odf3Q920N1 254 aa12.78□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 P04944 107 aa12.78□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Mlst8Q9DCJ1 326 aa12.78□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Rpl39P62892 51 aa12.78□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Trav9n-2A0A0G2JDP3 113 aa12.77□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Snai3Q9QY31 287 aa12.77□□□□□ -0.36
Ccdc88a-201ENSMUST00000040182 Igf1P05017 153 aa12.77□□□□□ -0.37
Ccdc88a-201ENSMUST00000040182 Znf672Q99LH4 468 aa12.77□□□□□ -0.37
Ccdc88a-201ENSMUST00000040182 Tm2d1Q99MB3 208 aa12.77□□□□□ -0.37
Ccdc88a-201ENSMUST00000040182 H2al1bA0A087WP11 105 aa12.77□□□□□ -0.37
Ccdc88a-201ENSMUST00000040182 Ntf4Q80VU4 209 aa12.77□□□□□ -0.37
Ccdc88a-201ENSMUST00000040182 Gm17472A0A075B683 117 aa12.77□□□□□ -0.37
Ccdc88a-201ENSMUST00000040182 TrrapQ80YV3 2565 aaKnown RBP12.76□□□□□ -0.37
Ccdc88a-201ENSMUST00000040182 Gm21994F6T2D2 329 aa12.76□□□□□ -0.37
Ccdc88a-201ENSMUST00000040182 Vpreb1P13372 142 aa12.76□□□□□ -0.37
Ccdc88a-201ENSMUST00000040182 Klk12B2RVZ0 247 aa12.76□□□□□ -0.37
Ccdc88a-201ENSMUST00000040182 Gm15091B1AZM2 449 aa12.76□□□□□ -0.37
Ccdc88a-201ENSMUST00000040182 GrnP28798 589 aaKnown RBP12.75□□□□□ -0.37
Ccdc88a-201ENSMUST00000040182 Igkv1-88A0A140T8N1 120 aa12.75□□□□□ -0.37
Ccdc88a-201ENSMUST00000040182 Spag11Q8K4N2 71 aa12.75□□□□□ -0.37
Ccdc88a-201ENSMUST00000040182 Wfdc11A2A5H7 82 aa12.75□□□□□ -0.37
Retrieved 100 of 22,080 RNA–protein pairs in 40.8 ms