RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 DNAH8Q96JB1 4490 aa2.51□□□□□ -2.01
SCN1A-216ENST00000637968 MT1HL1P0DM35 61 aa2.49□□□□□ -2.01
SCN1A-216ENST00000637968 CSMD3Q7Z407 3707 aa2.49□□□□□ -2.01
SCN1A-216ENST00000637968 TRRAPQ9Y4A5 3859 aa2.49□□□□□ -2.01
SCN1A-216ENST00000637968 DNAH10Q8IVF4 4471 aa2.48□□□□□ -2.01
SCN1A-216ENST00000637968 CMYA5Q8N3K9 4069 aa2.46□□□□□ -2.02
SCN1A-216ENST00000637968 KRTAP4-5Q9BYR2 181 aa2.46□□□□□ -2.02
SCN1A-216ENST00000637968 DNAH1Q9P2D7 4330 aa2.45□□□□□ -2.02
SCN1A-216ENST00000637968 DNAH17Q9UFH2 4485 aa2.45□□□□□ -2.02
SCN1A-216ENST00000637968 ANK2Q01484 3957 aa2.44□□□□□ -2.02
SCN1A-216ENST00000637968 KRTAP10-4P60372 401 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-216ENST00000637968 LORP23490 312 aaPredicted RBP2.42□□□□□ -2.02
SCN1A-216ENST00000637968 VPS13DQ5THJ4 4388 aa2.41□□□□□ -2.02
SCN1A-216ENST00000637968 LYSTQ99698 3801 aa2.4□□□□□ -2.03
SCN1A-216ENST00000637968 DNAH11Q96DT5 4516 aa2.39□□□□□ -2.03
SCN1A-216ENST00000637968 DNAH9Q9NYC9 4486 aa2.38□□□□□ -2.03
SCN1A-216ENST00000637968 DNAH2Q9P225 4427 aa2.37□□□□□ -2.03
SCN1A-216ENST00000637968 DNHD1Q96M86 4753 aa2.37□□□□□ -2.03
SCN1A-216ENST00000637968 HUWE1Q7Z6Z7 4374 aaKnown RBP2.37□□□□□ -2.03
SCN1A-216ENST00000637968 FRAS1Q86XX4 4008 aa2.37□□□□□ -2.03
SCN1A-216ENST00000637968 LCE3AQ5TA76 89 aa2.35□□□□□ -2.03
SCN1A-216ENST00000637968 DNAH3Q8TD57 4116 aa2.34□□□□□ -2.03
SCN1A-216ENST00000637968 KRTAP12-3P60328 96 aa2.29□□□□□ -2.04
SCN1A-216ENST00000637968 APOBP04114 4563 aaKnown RBP2.28□□□□□ -2.04
SCN1A-216ENST00000637968 DNAH7Q8WXX0 4024 aa2.27□□□□□ -2.05
SCN1A-216ENST00000637968 PLECQ15149 4684 aaKnown RBP2.27□□□□□ -2.05
SCN1A-216ENST00000637968 DNAH5Q8TE73 4624 aa2.26□□□□□ -2.05
SCN1A-216ENST00000637968 LOC100996750A0A140TA64 210 aa2.24□□□□□ -2.05
SCN1A-216ENST00000637968 KRTAP4-6Q9BYQ5 205 aa2.24□□□□□ -2.05
SCN1A-216ENST00000637968 LRP1BQ9NZR2 4599 aa2.23□□□□□ -2.05
SCN1A-216ENST00000637968 KRTAP8-1Q8IUC2 63 aa2.23□□□□□ -2.05
SCN1A-216ENST00000637968 DYNC2H1Q8NCM8 4307 aaKnown RBP2.23□□□□□ -2.05
SCN1A-216ENST00000637968 KRTAP10-12P60413 245 aa2.22□□□□□ -2.05
SCN1A-216ENST00000637968 HECTD4Q9Y4D8 3996 aa2.2□□□□□ -2.06
SCN1A-216ENST00000637968 DNAH6Q9C0G6 4158 aa2.2□□□□□ -2.06
SCN1A-216ENST00000637968 PRKDCP78527 4128 aaKnown RBP2.18□□□□□ -2.06
SCN1A-216ENST00000637968 DYNC1H1Q14204 4646 aaKnown RBP2.18□□□□□ -2.06
SCN1A-216ENST00000637968 RYR1P21817 5038 aa2.18□□□□□ -2.06
SCN1A-216ENST00000637968 SACSQ9NZJ4 4579 aa2.17□□□□□ -2.06
SCN1A-216ENST00000637968 STARD9Q9P2P6 4700 aa2.16□□□□□ -2.06
SCN1A-216ENST00000637968 CRCT1Q9UGL9 99 aa2.16□□□□□ -2.06
SCN1A-216ENST00000637968 KMT2AQ03164 3969 aa2.15□□□□□ -2.06
SCN1A-216ENST00000637968 VPS13BQ7Z7G8 4022 aa2.15□□□□□ -2.06
SCN1A-216ENST00000637968 MT1HP80294 61 aa2.15□□□□□ -2.07
SCN1A-216ENST00000637968 BIRC6Q9NR09 4857 aa2.15□□□□□ -2.07
SCN1A-216ENST00000637968 MYCBP2O75592 4640 aa2.14□□□□□ -2.07
SCN1A-216ENST00000637968 KIAA1109Q2LD37 5005 aa2.13□□□□□ -2.07
SCN1A-216ENST00000637968 LRP1Q07954 4544 aaKnown RBP2.13□□□□□ -2.07
SCN1A-216ENST00000637968 KRTAP4-1Q9BYQ7 146 aa2.13□□□□□ -2.07
SCN1A-216ENST00000637968 RYR3Q15413 4870 aa2.12□□□□□ -2.07
SCN1A-216ENST00000637968 LCE3CQ5T5A8 94 aa2.11□□□□□ -2.07
SCN1A-216ENST00000637968 FAT1Q14517 4588 aa2.1□□□□□ -2.07
SCN1A-216ENST00000637968 FAT2Q9NYQ8 4349 aa2.1□□□□□ -2.07
SCN1A-216ENST00000637968 MT2AP02795 61 aa2.09□□□□□ -2.07
SCN1A-216ENST00000637968 FAT3Q8TDW7 4589 aa2.07□□□□□ -2.08
SCN1A-216ENST00000637968 RYR2Q92736 4967 aa2.07□□□□□ -2.08
SCN1A-216ENST00000637968 HERC2O95714 4834 aa2.06□□□□□ -2.08
SCN1A-216ENST00000637968 KRTAP10-5P60370 271 aa2.06□□□□□ -2.08
SCN1A-216ENST00000637968 SPRR2GQ9BYE4 73 aa2.06□□□□□ -2.08
SCN1A-216ENST00000637968 KRTAP12-4P60329 112 aa2.05□□□□□ -2.08
SCN1A-216ENST00000637968 PKD1P98161 4303 aa2.05□□□□□ -2.08
SCN1A-216ENST00000637968 HYDINQ4G0P3 5121 aa2.05□□□□□ -2.08
SCN1A-216ENST00000637968 PKHD1L1Q86WI1 4243 aa2.03□□□□□ -2.08
SCN1A-216ENST00000637968 MT1FP04733 61 aa2.03□□□□□ -2.08
SCN1A-216ENST00000637968 PKHD1P08F94 4074 aa2.03□□□□□ -2.08
SCN1A-216ENST00000637968 KRTAP10-7P60409 375 aaPredicted RBP2.03□□□□□ -2.09
SCN1A-216ENST00000637968 KRTAP2-3P0C7H8 128 aa2□□□□□ -2.09
SCN1A-216ENST00000637968 KRTAP2-4Q9BYR9 128 aa2□□□□□ -2.09
SCN1A-216ENST00000637968 KRTAP2-1Q9BYU5 128 aa2□□□□□ -2.09
SCN1A-216ENST00000637968 HSPG2P98160 4391 aa2□□□□□ -2.09
SCN1A-216ENST00000637968 PCLOQ9Y6V0 5065 aa1.99□□□□□ -2.09
SCN1A-216ENST00000637968 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.98□□□□□ -2.09
SCN1A-216ENST00000637968 KMT2CQ8NEZ4 4911 aaKnown RBP1.97□□□□□ -2.09
SCN1A-216ENST00000637968 KRTAP19-5Q3LI72 72 aa1.97□□□□□ -2.09
SCN1A-216ENST00000637968 SPRR2FQ96RM1 72 aa1.97□□□□□ -2.09
SCN1A-216ENST00000637968 HERC1Q15751 4861 aa1.97□□□□□ -2.09
SCN1A-216ENST00000637968 KRTAP4-8Q9BYQ9 185 aa1.97□□□□□ -2.09
SCN1A-216ENST00000637968 KRTAP9-2Q9BYQ4 174 aa1.96□□□□□ -2.1
SCN1A-216ENST00000637968 KRTAP19-1Q8IUB9 90 aa1.95□□□□□ -2.1
SCN1A-216ENST00000637968 KRTAP19-8Q3LI54 63 aa1.94□□□□□ -2.1
SCN1A-216ENST00000637968 KRTAP19-4Q3LI73 84 aa1.94□□□□□ -2.1
SCN1A-216ENST00000637968 KRTAP4-12Q9BQ66 201 aa1.94□□□□□ -2.1
SCN1A-216ENST00000637968 KRTAP9-8Q9BYQ0 159 aa1.94□□□□□ -2.1
SCN1A-216ENST00000637968 KRTAP9-6A0A140TA67 174 aa1.93□□□□□ -2.1
SCN1A-216ENST00000637968 EPPK1P58107 5090 aaKnown RBP1.93□□□□□ -2.1
SCN1A-216ENST00000637968 LRP2P98164 4655 aa1.92□□□□□ -2.1
SCN1A-216ENST00000637968 KRTAP5-3Q6L8H2 238 aa1.92□□□□□ -2.1
SCN1A-216ENST00000637968 TNXBP22105 4242 aa1.9□□□□□ -2.1
SCN1A-216ENST00000637968 LPAP08519 4548 aa1.9□□□□□ -2.1
SCN1A-216ENST00000637968 MT1XP80297 61 aa1.9□□□□□ -2.11
SCN1A-216ENST00000637968 SPRR2EP22531 72 aa1.89□□□□□ -2.11
SCN1A-216ENST00000637968 SPRR2BP35325 72 aa1.89□□□□□ -2.11
SCN1A-216ENST00000637968 SPRR2AP35326 72 aa1.89□□□□□ -2.11
SCN1A-216ENST00000637968 ABCA13Q86UQ4 5058 aa1.89□□□□□ -2.11
SCN1A-216ENST00000637968 KRTAP9-3Q9BYQ3 159 aa1.88□□□□□ -2.11
SCN1A-216ENST00000637968 KRTAP9-9Q9BYP9 154 aa1.87□□□□□ -2.11
SCN1A-216ENST00000637968 KRTAP9-4Q9BYQ2 154 aa1.87□□□□□ -2.11
SCN1A-216ENST00000637968 KRTAP19-2Q3LHN2 52 aa1.86□□□□□ -2.11
SCN1A-216ENST00000637968 FLGP20930 4061 aaPredicted RBP1.85□□□□□ -2.11
SCN1A-216ENST00000637968 KRTAP9-6A8MVA2 160 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 163.2 ms