RNA–Protein interactions for RNA: ENST00000637927.1

CACNA1A-253, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CACNA1A, Length 6,847 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-253ENST00000637927 FBN3Q75N90 2809 aa7.34□□□□□ -1.24
CACNA1A-253ENST00000637927 COL7A1Q02388 2944 aa7.33□□□□□ -1.24
CACNA1A-253ENST00000637927 KRTAP3-2Q9BYR7 98 aa7.29□□□□□ -1.24
CACNA1A-253ENST00000637927 ZNF469Q96JG9 3925 aaPredicted RBP7.22□□□□□ -1.25
CACNA1A-253ENST00000637927 KRTAP10-4P60372 401 aaPredicted RBP7.08□□□□□ -1.28
CACNA1A-253ENST00000637927 SPRR2FQ96RM1 72 aa7.04□□□□□ -1.28
CACNA1A-253ENST00000637927 DNAH9Q9NYC9 4486 aa6.99□□□□□ -1.29
CACNA1A-253ENST00000637927 DNAH1Q9P2D7 4330 aa6.96□□□□□ -1.3
CACNA1A-253ENST00000637927 KRTAP10-7P60409 375 aaPredicted RBP6.95□□□□□ -1.3
CACNA1A-253ENST00000637927 DNAH10Q8IVF4 4471 aa6.87□□□□□ -1.31
CACNA1A-253ENST00000637927 FRAS1Q86XX4 4008 aa6.85□□□□□ -1.31
CACNA1A-253ENST00000637927 DNAH2Q9P225 4427 aa6.85□□□□□ -1.31
CACNA1A-253ENST00000637927 KRTAP4-1Q9BYQ7 146 aa6.82□□□□□ -1.32
CACNA1A-253ENST00000637927 DNAH3Q8TD57 4116 aa6.8□□□□□ -1.32
CACNA1A-253ENST00000637927 ANK2Q01484 3957 aa6.78□□□□□ -1.32
CACNA1A-253ENST00000637927 MT1HP80294 61 aa6.76□□□□□ -1.33
CACNA1A-253ENST00000637927 SPRR2EP22531 72 aa6.72□□□□□ -1.33
CACNA1A-253ENST00000637927 SPRR2BP35325 72 aa6.72□□□□□ -1.33
CACNA1A-253ENST00000637927 SPRR2AP35326 72 aa6.72□□□□□ -1.33
CACNA1A-253ENST00000637927 LCE3BQ5TA77 95 aa6.69□□□□□ -1.34
CACNA1A-253ENST00000637927 KMT2AQ03164 3969 aa6.68□□□□□ -1.34
CACNA1A-253ENST00000637927 KRTAP19-5Q3LI72 72 aa6.68□□□□□ -1.34
CACNA1A-253ENST00000637927 KRTAP23-1A1A580 65 aa6.62□□□□□ -1.35
CACNA1A-253ENST00000637927 FAT2Q9NYQ8 4349 aa6.6□□□□□ -1.35
CACNA1A-253ENST00000637927 DNAH8Q96JB1 4490 aa6.6□□□□□ -1.35
CACNA1A-253ENST00000637927 PLECQ15149 4684 aaKnown RBP6.58□□□□□ -1.36
CACNA1A-253ENST00000637927 VPS13BQ7Z7G8 4022 aa6.56□□□□□ -1.36
CACNA1A-253ENST00000637927 DNAH5Q8TE73 4624 aa6.55□□□□□ -1.36
CACNA1A-253ENST00000637927 MT2AP02795 61 aa6.55□□□□□ -1.36
CACNA1A-253ENST00000637927 CMYA5Q8N3K9 4069 aa6.53□□□□□ -1.36
CACNA1A-253ENST00000637927 DNAH11Q96DT5 4516 aa6.52□□□□□ -1.37
CACNA1A-253ENST00000637927 MT1FP04733 61 aa6.48□□□□□ -1.37
CACNA1A-253ENST00000637927 DNAH7Q8WXX0 4024 aa6.48□□□□□ -1.37
CACNA1A-253ENST00000637927 DNAH17Q9UFH2 4485 aa6.45□□□□□ -1.38
CACNA1A-253ENST00000637927 PRKDCP78527 4128 aaKnown RBP6.45□□□□□ -1.38
CACNA1A-253ENST00000637927 SPRR2DP22532 72 aa6.45□□□□□ -1.38
CACNA1A-253ENST00000637927 LYSTQ99698 3801 aa6.44□□□□□ -1.38
CACNA1A-253ENST00000637927 STARD9Q9P2P6 4700 aa6.42□□□□□ -1.38
CACNA1A-253ENST00000637927 VPS13DQ5THJ4 4388 aa6.4□□□□□ -1.38
CACNA1A-253ENST00000637927 DYNC2H1Q8NCM8 4307 aaKnown RBP6.38□□□□□ -1.39
CACNA1A-253ENST00000637927 LRP1BQ9NZR2 4599 aa6.38□□□□□ -1.39
CACNA1A-253ENST00000637927 MT1GP13640 62 aa6.36□□□□□ -1.39
CACNA1A-253ENST00000637927 LCE3CQ5T5A8 94 aa6.36□□□□□ -1.39
CACNA1A-253ENST00000637927 SPRR2GQ9BYE4 73 aa6.31□□□□□ -1.4
CACNA1A-253ENST00000637927 DNHD1Q96M86 4753 aa6.31□□□□□ -1.4
CACNA1A-253ENST00000637927 DNAH6Q9C0G6 4158 aa6.26□□□□□ -1.41
CACNA1A-253ENST00000637927 FAT1Q14517 4588 aa6.24□□□□□ -1.41
CACNA1A-253ENST00000637927 LCE2BO14633 110 aa6.22□□□□□ -1.41
CACNA1A-253ENST00000637927 SPRR5A0A1B0GTR4 108 aa6.21□□□□□ -1.42
CACNA1A-253ENST00000637927 SACSQ9NZJ4 4579 aa6.19□□□□□ -1.42
CACNA1A-253ENST00000637927 KRTAP12-4P60329 112 aa6.09□□□□□ -1.43
CACNA1A-253ENST00000637927 DYNC1H1Q14204 4646 aaKnown RBP6.08□□□□□ -1.44
CACNA1A-253ENST00000637927 MT4P47944 62 aa6.08□□□□□ -1.44
CACNA1A-253ENST00000637927 HECTD4Q9Y4D8 3996 aa6.08□□□□□ -1.44
CACNA1A-253ENST00000637927 APOBP04114 4563 aaKnown RBP6.01□□□□□ -1.45
CACNA1A-253ENST00000637927 KRTAP4-8A0A0G2JLE6 195 aa6.01□□□□□ -1.45
CACNA1A-253ENST00000637927 KRTAP4-8Q9BYQ9 185 aa6.01□□□□□ -1.45
CACNA1A-253ENST00000637927 KRTAP17-1Q9BYP8 105 aa6□□□□□ -1.45
CACNA1A-253ENST00000637927 LCE2CQ5TA81 110 aa5.99□□□□□ -1.45
CACNA1A-253ENST00000637927 LCE2DQ5TA82 110 aaPredicted RBP5.94□□□□□ -1.46
CACNA1A-253ENST00000637927 LPAP08519 4548 aa5.94□□□□□ -1.46
CACNA1A-253ENST00000637927 LCE3EQ5T5B0 92 aa5.88□□□□□ -1.47
CACNA1A-253ENST00000637927 FAT3Q8TDW7 4589 aa5.88□□□□□ -1.47
CACNA1A-253ENST00000637927 LCE1BQ5T7P3 118 aa5.88□□□□□ -1.47
CACNA1A-253ENST00000637927 MT1XP80297 61 aa5.86□□□□□ -1.47
CACNA1A-253ENST00000637927 RYR1P21817 5038 aa5.84□□□□□ -1.47
CACNA1A-253ENST00000637927 PKD1P98161 4303 aa5.83□□□□□ -1.48
CACNA1A-253ENST00000637927 LCE3DQ9BYE3 92 aa5.83□□□□□ -1.48
CACNA1A-253ENST00000637927 KRTAP19-1Q8IUB9 90 aa5.81□□□□□ -1.48
CACNA1A-253ENST00000637927 HSPG2P98160 4391 aa5.79□□□□□ -1.48
CACNA1A-253ENST00000637927 KRTAP4-7Q9BYR0 210 aa5.78□□□□□ -1.48
CACNA1A-253ENST00000637927 LCE1DQ5T752 114 aa5.73□□□□□ -1.49
CACNA1A-253ENST00000637927 MT1BP07438 61 aa5.7□□□□□ -1.5
CACNA1A-253ENST00000637927 KRTAP19-8Q3LI54 63 aa5.7□□□□□ -1.5
CACNA1A-253ENST00000637927 LRP1Q07954 4544 aaKnown RBP5.7□□□□□ -1.5
CACNA1A-253ENST00000637927 MYCBP2O75592 4640 aa5.69□□□□□ -1.5
CACNA1A-253ENST00000637927 PKHD1P08F94 4074 aa5.68□□□□□ -1.5
CACNA1A-253ENST00000637927 KRTAP9-8Q9BYQ0 159 aa5.68□□□□□ -1.5
CACNA1A-253ENST00000637927 PKHD1L1Q86WI1 4243 aa5.68□□□□□ -1.5
CACNA1A-253ENST00000637927 HYDINQ4G0P3 5121 aa5.64□□□□□ -1.51
CACNA1A-253ENST00000637927 RYR3Q15413 4870 aa5.61□□□□□ -1.51
CACNA1A-253ENST00000637927 LOC100996750A0A140TA64 210 aa5.6□□□□□ -1.51
CACNA1A-253ENST00000637927 TNXBP22105 4242 aa5.58□□□□□ -1.52
CACNA1A-253ENST00000637927 PRM1P04553 51 aa5.58□□□□□ -1.52
CACNA1A-253ENST00000637927 KRTAP9-3Q9BYQ3 159 aa5.54□□□□□ -1.52
CACNA1A-253ENST00000637927 LCE5AQ5TCM9 118 aa5.51□□□□□ -1.53
CACNA1A-253ENST00000637927 KIAA1109Q2LD37 5005 aa5.49□□□□□ -1.53
CACNA1A-253ENST00000637927 RYR2Q92736 4967 aa5.46□□□□□ -1.54
CACNA1A-253ENST00000637927 KRTAP4-3Q9BYR4 195 aa5.45□□□□□ -1.54
CACNA1A-253ENST00000637927 KRTAP19-4Q3LI73 84 aa5.41□□□□□ -1.54
CACNA1A-253ENST00000637927 KRTAP19-3Q7Z4W3 81 aa5.41□□□□□ -1.54
CACNA1A-253ENST00000637927 FLGP20930 4061 aaPredicted RBP5.4□□□□□ -1.54
CACNA1A-253ENST00000637927 KMT2CQ8NEZ4 4911 aaKnown RBP5.35□□□□□ -1.55
CACNA1A-253ENST00000637927 KRTAP4-9Q9BYQ8 210 aa5.34□□□□□ -1.55
CACNA1A-253ENST00000637927 MT1LQ93083 61 aa5.31□□□□□ -1.56
CACNA1A-253ENST00000637927 LCE1CQ5T751 118 aa5.3□□□□□ -1.56
CACNA1A-253ENST00000637927 LCE1EQ5T753 118 aa5.3□□□□□ -1.56
CACNA1A-253ENST00000637927 LCE1FQ5T754 118 aa5.3□□□□□ -1.56
CACNA1A-253ENST00000637927 LCE1AQ5T7P2 110 aa5.3□□□□□ -1.56
CACNA1A-253ENST00000637927 HERC2O95714 4834 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms