RNA–Protein interactions for RNA: ENST00000628915.2

R3HDM1-220, Transcript of R3H domain containing 1, humanhuman

TSL 5 BASIC

Gene R3HDM1, Length 4,325 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-220ENST00000628915 TLN1Q9Y490 2541 aaKnown RBP2.19□□□□□ -2.06
R3HDM1-220ENST00000628915 SPTBN4Q9H254 2564 aa2.19□□□□□ -2.06
R3HDM1-220ENST00000628915 LINC01556Q5JQF7 62 aa2.19□□□□□ -2.06
R3HDM1-220ENST00000628915 C10orf95Q9H7T3 257 aa2.19□□□□□ -2.06
R3HDM1-220ENST00000628915 KRTAP4-2Q9BYR5 136 aa2.19□□□□□ -2.06
R3HDM1-220ENST00000628915 HERC1Q15751 4861 aa2.19□□□□□ -2.06
R3HDM1-220ENST00000628915 SPACA4Q8TDM5 124 aa2.18□□□□□ -2.06
R3HDM1-220ENST00000628915 EPG5Q9HCE0 2579 aa2.18□□□□□ -2.06
R3HDM1-220ENST00000628915 FLNBO75369 2602 aaKnown RBP2.18□□□□□ -2.06
R3HDM1-220ENST00000628915 FLGP20930 4061 aaPredicted RBP2.18□□□□□ -2.06
R3HDM1-220ENST00000628915 H1FX-AS1Q4G0G2 97 aa2.18□□□□□ -2.06
R3HDM1-220ENST00000628915 ANKRD11Q6UB99 2663 aaPredicted RBP2.18□□□□□ -2.06
R3HDM1-220ENST00000628915 A0A0D9SG42 100 aa2.17□□□□□ -2.06
R3HDM1-220ENST00000628915 KRTAP1-1Q07627 177 aa2.17□□□□□ -2.06
R3HDM1-220ENST00000628915 TPRXLQ17RH7 258 aa2.17□□□□□ -2.06
R3HDM1-220ENST00000628915 MAPK1IP1LQ8NDC0 245 aa2.16□□□□□ -2.06
R3HDM1-220ENST00000628915 KIAA1109Q2LD37 5005 aa2.16□□□□□ -2.06
R3HDM1-220ENST00000628915 KRTAP4-5Q9BYR2 181 aa2.16□□□□□ -2.06
R3HDM1-220ENST00000628915 KRTAP7-1Q8IUC3 87 aa2.15□□□□□ -2.06
R3HDM1-220ENST00000628915 ANAPC11Q9NYG5 84 aa2.15□□□□□ -2.06
R3HDM1-220ENST00000628915 H0YAA0 97 aa2.15□□□□□ -2.07
R3HDM1-220ENST00000628915 KRTAP3-1Q9BYR8 98 aa2.15□□□□□ -2.07
R3HDM1-220ENST00000628915 KRTAP13-3Q3SY46 172 aa2.14□□□□□ -2.07
R3HDM1-220ENST00000628915 KRTAP10-2P60368 255 aa2.14□□□□□ -2.07
R3HDM1-220ENST00000628915 FAT1Q14517 4588 aa2.14□□□□□ -2.07
R3HDM1-220ENST00000628915 COX6B2Q6YFQ2 88 aa2.13□□□□□ -2.07
R3HDM1-220ENST00000628915 Q6ZSA8 131 aa2.13□□□□□ -2.07
R3HDM1-220ENST00000628915 KRTAP24-1Q3LI83 254 aa2.13□□□□□ -2.07
R3HDM1-220ENST00000628915 PP632Q6XCG6 107 aa2.13□□□□□ -2.07
R3HDM1-220ENST00000628915 MTORP42345 2549 aa2.13□□□□□ -2.07
R3HDM1-220ENST00000628915 TENM2Q9NT68 2774 aa2.13□□□□□ -2.07
R3HDM1-220ENST00000628915 K7EIL1 84 aa2.13□□□□□ -2.07
R3HDM1-220ENST00000628915 INE1O15225 51 aa2.11□□□□□ -2.07
R3HDM1-220ENST00000628915 CEP295Q9C0D2 2601 aa2.1□□□□□ -2.07
R3HDM1-220ENST00000628915 HMCN2Q8NDA2 5059 aa2.09□□□□□ -2.07
R3HDM1-220ENST00000628915 USP9YO00507 2555 aaPredicted RBP2.08□□□□□ -2.08
R3HDM1-220ENST00000628915 MUC2Q02817 5179 aa2.08□□□□□ -2.08
R3HDM1-220ENST00000628915 HIVEP1P15822 2718 aa2.08□□□□□ -2.08
R3HDM1-220ENST00000628915 ITPR3Q14573 2671 aa2.07□□□□□ -2.08
R3HDM1-220ENST00000628915 KRTAP13-1Q8IUC0 172 aa2.07□□□□□ -2.08
R3HDM1-220ENST00000628915 NBEAL2Q6ZNJ1 2754 aa2.07□□□□□ -2.08
R3HDM1-220ENST00000628915 Q6ZRN7 208 aaPredicted RBP2.06□□□□□ -2.08
R3HDM1-220ENST00000628915 ATRQ13535 2644 aa2.05□□□□□ -2.08
R3HDM1-220ENST00000628915 MUC17Q685J3 4493 aa2.05□□□□□ -2.08
R3HDM1-220ENST00000628915 SETD2Q9BYW2 2564 aaPredicted RBP2.04□□□□□ -2.08
R3HDM1-220ENST00000628915 LRP1Q07954 4544 aaKnown RBP2.02□□□□□ -2.09
R3HDM1-220ENST00000628915 KRTAP10-3P60369 221 aa2.02□□□□□ -2.09
R3HDM1-220ENST00000628915 KRTAP10-9P60411 292 aa2.01□□□□□ -2.09
R3HDM1-220ENST00000628915 S4R3F8 94 aa2.01□□□□□ -2.09
R3HDM1-220ENST00000628915 LRP2P98164 4655 aa2.01□□□□□ -2.09
R3HDM1-220ENST00000628915 SRRM2Q9UQ35 2752 aaKnown RBP2□□□□□ -2.09
R3HDM1-220ENST00000628915 UBR4Q5T4S7 5183 aa1.99□□□□□ -2.09
R3HDM1-220ENST00000628915 NSD1Q96L73 2696 aaPredicted RBP1.99□□□□□ -2.09
R3HDM1-220ENST00000628915 STAB2Q8WWQ8 2551 aa1.99□□□□□ -2.09
R3HDM1-220ENST00000628915 MGAM2Q2M2H8 2515 aa1.99□□□□□ -2.09
R3HDM1-220ENST00000628915 TEP1Q99973 2627 aaKnown RBP1.98□□□□□ -2.09
R3HDM1-220ENST00000628915 KRTAP10-8P60410 259 aa1.98□□□□□ -2.09
R3HDM1-220ENST00000628915 NOTCH1P46531 2555 aa1.95□□□□□ -2.1
R3HDM1-220ENST00000628915 KRTAP1-5Q9BYS1 174 aa1.95□□□□□ -2.1
R3HDM1-220ENST00000628915 KRTAP12-2P59991 146 aa1.94□□□□□ -2.1
R3HDM1-220ENST00000628915 RNF213Q63HN8 5207 aa1.94□□□□□ -2.1
R3HDM1-220ENST00000628915 KRTAP10-11P60412 298 aa1.93□□□□□ -2.1
R3HDM1-220ENST00000628915 FLNAP21333 2647 aaKnown RBP1.91□□□□□ -2.1
R3HDM1-220ENST00000628915 KRTAP5-3Q6L8H2 238 aa1.91□□□□□ -2.1
R3HDM1-220ENST00000628915 NBEAL1Q6ZS30 2694 aa1.89□□□□□ -2.11
R3HDM1-220ENST00000628915 C9orf92A6NGG3 77 aa1.89□□□□□ -2.11
R3HDM1-220ENST00000628915 COL6A5A8TX70 2615 aa1.88□□□□□ -2.11
R3HDM1-220ENST00000628915 KRTAP13-2Q52LG2 175 aa1.88□□□□□ -2.11
R3HDM1-220ENST00000628915 KRTAP10-6P60371 365 aaPredicted RBP1.88□□□□□ -2.11
R3HDM1-220ENST00000628915 RPS29P62273 56 aaKnown RBP1.88□□□□□ -2.11
R3HDM1-220ENST00000628915 FAT4Q6V0I7 4981 aa1.87□□□□□ -2.11
R3HDM1-220ENST00000628915 KRTAP13-4Q3LI77 160 aa1.87□□□□□ -2.11
R3HDM1-220ENST00000628915 SMR3AQ99954 134 aa1.86□□□□□ -2.11
R3HDM1-220ENST00000628915 TENM3Q9P273 2699 aa1.85□□□□□ -2.11
R3HDM1-220ENST00000628915 M0QZ58 72 aa1.85□□□□□ -2.11
R3HDM1-220ENST00000628915 KRTAP12-1P59990 96 aa1.84□□□□□ -2.11
R3HDM1-220ENST00000628915 STAB1Q9NY15 2570 aa1.84□□□□□ -2.12
R3HDM1-220ENST00000628915 A0A1B0GVY2 172 aa1.83□□□□□ -2.12
R3HDM1-220ENST00000628915 KRTAP1-4P0C5Y4 121 aa1.81□□□□□ -2.12
R3HDM1-220ENST00000628915 Q5VSD8 79 aa1.81□□□□□ -2.12
R3HDM1-220ENST00000628915 KRTAP9-8Q9BYQ0 159 aa1.81□□□□□ -2.12
R3HDM1-220ENST00000628915 TNP1P09430 55 aa1.75□□□□□ -2.13
R3HDM1-220ENST00000628915 SMR3BP02814 79 aaPredicted RBP1.72□□□□□ -2.13
R3HDM1-220ENST00000628915 KRTAP10-1P60331 282 aa1.71□□□□□ -2.14
R3HDM1-220ENST00000628915 SPRR5A0A1B0GTR4 108 aa1.7□□□□□ -2.14
R3HDM1-220ENST00000628915 LCE1AQ5T7P2 110 aa1.69□□□□□ -2.14
R3HDM1-220ENST00000628915 KRTAP10-4P60372 401 aaPredicted RBP1.69□□□□□ -2.14
R3HDM1-220ENST00000628915 SSPOA2VEC9 5147 aa1.68□□□□□ -2.14
R3HDM1-220ENST00000628915 OBSCNQ5VST9 7968 aa1.66□□□□□ -2.14
R3HDM1-220ENST00000628915 MT3P25713 68 aa1.65□□□□□ -2.15
R3HDM1-220ENST00000628915 LCE1FQ5T754 118 aa1.64□□□□□ -2.15
R3HDM1-220ENST00000628915 USH2AO75445 5202 aa1.63□□□□□ -2.15
R3HDM1-220ENST00000628915 LCE3CQ5T5A8 94 aa1.63□□□□□ -2.15
R3HDM1-220ENST00000628915 M0R2T5 61 aa1.59□□□□□ -2.15
R3HDM1-220ENST00000628915 GPR98Q8WXG9 6306 aa1.58□□□□□ -2.16
R3HDM1-220ENST00000628915 KRTAP2-2Q9BYT5 123 aa1.57□□□□□ -2.16
R3HDM1-220ENST00000628915 KRTAP10-7P60409 375 aaPredicted RBP1.56□□□□□ -2.16
R3HDM1-220ENST00000628915 KRTAP19-2Q3LHN2 52 aa1.55□□□□□ -2.16
R3HDM1-220ENST00000628915 MT1HL1P0DM35 61 aa1.55□□□□□ -2.16
R3HDM1-220ENST00000628915 KRTAP10-10P60014 251 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms