RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 DNAH11Q96DT5 4516 aa4.26□□□□□ -1.73
VPS11-209ENST00000622309 KIAA1109Q2LD37 5005 aa4.25□□□□□ -1.73
VPS11-209ENST00000622309 KRTAP10-2P60368 255 aa4.23□□□□□ -1.73
VPS11-209ENST00000622309 A0A1B0GVY2 172 aa4.23□□□□□ -1.73
VPS11-209ENST00000622309 KRTAP23-1A1A580 65 aa4.23□□□□□ -1.73
VPS11-209ENST00000622309 DNAH5Q8TE73 4624 aa4.21□□□□□ -1.73
VPS11-209ENST00000622309 KRTAP4-5Q9BYR2 181 aa4.19□□□□□ -1.74
VPS11-209ENST00000622309 KRTAP3-1Q9BYR8 98 aa4.19□□□□□ -1.74
VPS11-209ENST00000622309 ABCA13Q86UQ4 5058 aa4.18□□□□□ -1.74
VPS11-209ENST00000622309 LRP1BQ9NZR2 4599 aa4.18□□□□□ -1.74
VPS11-209ENST00000622309 KRTAP13-2Q52LG2 175 aa4.17□□□□□ -1.74
VPS11-209ENST00000622309 KRTAP10-1P60331 282 aa4.16□□□□□ -1.74
VPS11-209ENST00000622309 DYNC1H1Q14204 4646 aaKnown RBP4.15□□□□□ -1.74
VPS11-209ENST00000622309 PKHD1P08F94 4074 aa4.15□□□□□ -1.75
VPS11-209ENST00000622309 S4R3F8 94 aa4.14□□□□□ -1.75
VPS11-209ENST00000622309 KRTAP13-4Q3LI77 160 aa4.14□□□□□ -1.75
VPS11-209ENST00000622309 FAT2Q9NYQ8 4349 aa4.14□□□□□ -1.75
VPS11-209ENST00000622309 VPS13BQ7Z7G8 4022 aa4.13□□□□□ -1.75
VPS11-209ENST00000622309 PKD1P98161 4303 aa4.13□□□□□ -1.75
VPS11-209ENST00000622309 KRTAP10-6P60371 365 aaPredicted RBP4.11□□□□□ -1.75
VPS11-209ENST00000622309 SMR3BP02814 79 aaPredicted RBP4.1□□□□□ -1.75
VPS11-209ENST00000622309 R4GN34 69 aa4.1□□□□□ -1.75
VPS11-209ENST00000622309 HSPG2P98160 4391 aa4.08□□□□□ -1.76
VPS11-209ENST00000622309 C9orf92A6NGG3 77 aa4.07□□□□□ -1.76
VPS11-209ENST00000622309 KRTAP12-2P59991 146 aa4.07□□□□□ -1.76
VPS11-209ENST00000622309 PLAC4Q8WY50 150 aa4.07□□□□□ -1.76
VPS11-209ENST00000622309 FAT1Q14517 4588 aa4.07□□□□□ -1.76
VPS11-209ENST00000622309 XP32Q5T750 250 aa4.06□□□□□ -1.76
VPS11-209ENST00000622309 HERC1Q15751 4861 aa4.04□□□□□ -1.76
VPS11-209ENST00000622309 KRTAP3-2Q9BYR7 98 aa4.03□□□□□ -1.76
VPS11-209ENST00000622309 KRTAP10-8P60410 259 aa4.02□□□□□ -1.77
VPS11-209ENST00000622309 KRTAP1-4P0C5Y4 121 aa4.01□□□□□ -1.77
VPS11-209ENST00000622309 KRTAP12-1P59990 96 aa4□□□□□ -1.77
VPS11-209ENST00000622309 Q5VSD8 79 aa4□□□□□ -1.77
VPS11-209ENST00000622309 KRTAP3-3Q9BYR6 98 aa4□□□□□ -1.77
VPS11-209ENST00000622309 APOBP04114 4563 aaKnown RBP3.98□□□□□ -1.77
VPS11-209ENST00000622309 LCE2DQ5TA82 110 aaPredicted RBP3.97□□□□□ -1.77
VPS11-209ENST00000622309 PRO2289Q9P1D8 64 aa3.95□□□□□ -1.78
VPS11-209ENST00000622309 RPS29P62273 56 aaKnown RBP3.94□□□□□ -1.78
VPS11-209ENST00000622309 UBR4Q5T4S7 5183 aa3.92□□□□□ -1.78
VPS11-209ENST00000622309 LRP1Q07954 4544 aaKnown RBP3.92□□□□□ -1.78
VPS11-209ENST00000622309 MYCBP2O75592 4640 aa3.9□□□□□ -1.78
VPS11-209ENST00000622309 M0QZ58 72 aa3.89□□□□□ -1.79
VPS11-209ENST00000622309 PKHD1L1Q86WI1 4243 aa3.85□□□□□ -1.79
VPS11-209ENST00000622309 KRTAP10-4P60372 401 aaPredicted RBP3.85□□□□□ -1.79
VPS11-209ENST00000622309 HMCN2Q8NDA2 5059 aa3.85□□□□□ -1.79
VPS11-209ENST00000622309 LCE2CQ5TA81 110 aa3.84□□□□□ -1.79
VPS11-209ENST00000622309 LCE2AQ5TA79 106 aaPredicted RBP3.82□□□□□ -1.8
VPS11-209ENST00000622309 PP632Q6XCG6 107 aa3.79□□□□□ -1.8
VPS11-209ENST00000622309 FAT3Q8TDW7 4589 aa3.77□□□□□ -1.81
VPS11-209ENST00000622309 TNXBP22105 4242 aa3.77□□□□□ -1.81
VPS11-209ENST00000622309 MT1HL1P0DM35 61 aa3.71□□□□□ -1.82
VPS11-209ENST00000622309 RNF213Q63HN8 5207 aa3.71□□□□□ -1.82
VPS11-209ENST00000622309 KRTAP9-2Q9BYQ4 174 aa3.69□□□□□ -1.82
VPS11-209ENST00000622309 LPAP08519 4548 aa3.69□□□□□ -1.82
VPS11-209ENST00000622309 KRTAP9-6A0A140TA67 174 aa3.68□□□□□ -1.82
VPS11-209ENST00000622309 LRP2P98164 4655 aa3.66□□□□□ -1.82
VPS11-209ENST00000622309 INE1O15225 51 aa3.63□□□□□ -1.83
VPS11-209ENST00000622309 LCE2BO14633 110 aa3.62□□□□□ -1.83
VPS11-209ENST00000622309 SPRR5A0A1B0GTR4 108 aa3.61□□□□□ -1.83
VPS11-209ENST00000622309 TNP1P09430 55 aa3.52□□□□□ -1.85
VPS11-209ENST00000622309 FAT4Q6V0I7 4981 aa3.52□□□□□ -1.85
VPS11-209ENST00000622309 LORP23490 312 aaPredicted RBP3.51□□□□□ -1.85
VPS11-209ENST00000622309 MUC2Q02817 5179 aa3.5□□□□□ -1.85
VPS11-209ENST00000622309 CRCT1Q9UGL9 99 aa3.46□□□□□ -1.86
VPS11-209ENST00000622309 KRTAP4-1Q9BYQ7 146 aa3.41□□□□□ -1.86
VPS11-209ENST00000622309 MUC17Q685J3 4493 aa3.4□□□□□ -1.87
VPS11-209ENST00000622309 FSIP2Q5CZC0 6907 aa3.28□□□□□ -1.89
VPS11-209ENST00000622309 KRTAP9-7A8MTY7 169 aa3.27□□□□□ -1.89
VPS11-209ENST00000622309 KRTAP19-2Q3LHN2 52 aa3.24□□□□□ -1.89
VPS11-209ENST00000622309 LCE3AQ5TA76 89 aa3.23□□□□□ -1.89
VPS11-209ENST00000622309 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.22□□□□□ -1.89
VPS11-209ENST00000622309 FLGP20930 4061 aaPredicted RBP3.22□□□□□ -1.89
VPS11-209ENST00000622309 M0R2T5 61 aa3.19□□□□□ -1.9
VPS11-209ENST00000622309 MT1HP80294 61 aa3.18□□□□□ -1.9
VPS11-209ENST00000622309 KRTAP10-10P60014 251 aa3.12□□□□□ -1.91
VPS11-209ENST00000622309 KRTAP8-1Q8IUC2 63 aa3.11□□□□□ -1.91
VPS11-209ENST00000622309 KRTAP12-3P60328 96 aa3.06□□□□□ -1.92
VPS11-209ENST00000622309 KRTAP10-12P60413 245 aa3.06□□□□□ -1.92
VPS11-209ENST00000622309 KRTAP2-2Q9BYT5 123 aa3.04□□□□□ -1.92
VPS11-209ENST00000622309 MT1FP04733 61 aa3.01□□□□□ -1.93
VPS11-209ENST00000622309 KRTAP19-1Q8IUB9 90 aa3□□□□□ -1.93
VPS11-209ENST00000622309 SSPOA2VEC9 5147 aa3□□□□□ -1.93
VPS11-209ENST00000622309 FCGBPQ9Y6R7 5405 aaPredicted RBP2.99□□□□□ -1.93
VPS11-209ENST00000622309 MT2AP02795 61 aa2.99□□□□□ -1.93
VPS11-209ENST00000622309 USH2AO75445 5202 aa2.99□□□□□ -1.93
VPS11-209ENST00000622309 LCE1EQ5T753 118 aa2.98□□□□□ -1.93
VPS11-209ENST00000622309 SPRR2GQ9BYE4 73 aa2.98□□□□□ -1.93
VPS11-209ENST00000622309 LCE5AQ5TCM9 118 aa2.96□□□□□ -1.94
VPS11-209ENST00000622309 KRTAP9-8Q9BYQ0 159 aa2.96□□□□□ -1.94
VPS11-209ENST00000622309 KRTAP6-3Q3LI67 103 aa2.96□□□□□ -1.94
VPS11-209ENST00000622309 LCE1FQ5T754 118 aa2.94□□□□□ -1.94
VPS11-209ENST00000622309 LCE1AQ5T7P2 110 aa2.93□□□□□ -1.94
VPS11-209ENST00000622309 MACF1Q9UPN3 7388 aaKnown RBP2.92□□□□□ -1.94
VPS11-209ENST00000622309 KRTAP10-5P60370 271 aa2.92□□□□□ -1.94
VPS11-209ENST00000622309 SYNE2Q8WXH0 6885 aaKnown RBP2.91□□□□□ -1.94
VPS11-209ENST00000622309 KRTAP19-6Q3LI70 58 aa2.9□□□□□ -1.94
VPS11-209ENST00000622309 LCE3CQ5T5A8 94 aa2.89□□□□□ -1.95
VPS11-209ENST00000622309 KRTAP9-3Q9BYQ3 159 aa2.88□□□□□ -1.95
VPS11-209ENST00000622309 KRTAP20-1Q3LI63 56 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 145 ms