RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 NISCHQ9Y2I1 1504 aa14.61□□□□□ -0.07
VPS11-209ENST00000622309 PELP1Q8IZL8 1130 aaKnown RBP13.77□□□□□ -0.21
VPS11-209ENST00000622309 SLC24A1O60721 1099 aa13.7□□□□□ -0.22
VPS11-209ENST00000622309 MYT1Q01538 1121 aa13.43□□□□□ -0.26
VPS11-209ENST00000622309 ABCC9O60706 1549 aa13.38□□□□□ -0.27
VPS11-209ENST00000622309 HRCP23327 699 aa13.37□□□□□ -0.27
VPS11-209ENST00000622309 PRKCSHP14314 528 aaPredicted RBP13.24□□□□□ -0.29
VPS11-209ENST00000622309 CCDC180Q9P1Z9 1646 aa13.15□□□□□ -0.3
VPS11-209ENST00000622309 PPARGC1BQ86YN6 1023 aaKnown RBP13.03□□□□□ -0.32
VPS11-209ENST00000622309 SCAF1Q9H7N4 1312 aaKnown RBP12.89□□□□□ -0.35
VPS11-209ENST00000622309 PCGF6Q9BYE7 350 aa12.88□□□□□ -0.35
VPS11-209ENST00000622309 DNAJC5BQ9UF47 199 aa12.79□□□□□ -0.36
VPS11-209ENST00000622309 TTBK1Q5TCY1 1321 aaPredicted RBP12.72□□□□□ -0.37
VPS11-209ENST00000622309 APLP2Q06481 763 aa12.7□□□□□ -0.38
VPS11-209ENST00000622309 RB1CC1Q8TDY2 1594 aa12.68□□□□□ -0.38
VPS11-209ENST00000622309 SHROOM4Q9ULL8 1493 aa12.66□□□□□ -0.38
VPS11-209ENST00000622309 DAXXQ9UER7 740 aaPredicted RBP12.64□□□□□ -0.39
VPS11-209ENST00000622309 ERICH6Q7L0X2 663 aa12.58□□□□□ -0.4
VPS11-209ENST00000622309 DCAF8L2P0C7V8 631 aa12.56□□□□□ -0.4
VPS11-209ENST00000622309 NACADO15069 1562 aa12.52□□□□□ -0.41
VPS11-209ENST00000622309 ACIN1Q9UKV3 1341 aaKnown RBP12.48□□□□□ -0.41
VPS11-209ENST00000622309 ZEB1P37275 1124 aaPredicted RBP12.47□□□□□ -0.41
VPS11-209ENST00000622309 BCL11AQ9H165 835 aa12.46□□□□□ -0.41
VPS11-209ENST00000622309 SUPT5HO00267 1087 aaKnown RBP12.44□□□□□ -0.42
VPS11-209ENST00000622309 GTF3C3Q9Y5Q9 886 aa12.41□□□□□ -0.42
VPS11-209ENST00000622309 NEUROD1Q13562 356 aa12.38□□□□□ -0.43
VPS11-209ENST00000622309 PABPN1Q86U42 306 aaKnown RBP eCLIP12.38□□□□□ -0.43
VPS11-209ENST00000622309 MYO15BQ96JP2 1530 aa12.38□□□□□ -0.43
VPS11-209ENST00000622309 CENPBP07199 599 aaPredicted RBP12.37□□□□□ -0.43
VPS11-209ENST00000622309 PLPPR3Q6T4P5 718 aa12.35□□□□□ -0.43
VPS11-209ENST00000622309 TRIM26Q12899 539 aaPredicted RBP12.33□□□□□ -0.43
VPS11-209ENST00000622309 FAM9AQ8IZU1 332 aaPredicted RBP12.33□□□□□ -0.44
VPS11-209ENST00000622309 ZCCHC6Q5VYS8 1495 aaKnown RBP12.3□□□□□ -0.44
VPS11-209ENST00000622309 PLEKHG5O94827 1062 aa12.29□□□□□ -0.44
VPS11-209ENST00000622309 UNC13AQ9UPW8 1703 aa12.27□□□□□ -0.44
VPS11-209ENST00000622309 DCAF1Q9Y4B6 1507 aa12.27□□□□□ -0.44
VPS11-209ENST00000622309 EHMT2Q96KQ7 1210 aa12.24□□□□□ -0.45
VPS11-209ENST00000622309 BICRAQ9NZM4 1560 aa12.24□□□□□ -0.45
VPS11-209ENST00000622309 CHIC1Q5VXU3 224 aa12.23□□□□□ -0.45
VPS11-209ENST00000622309 EIF5BO60841 1220 aaKnown RBP12.19□□□□□ -0.46
VPS11-209ENST00000622309 CECR2Q9BXF3 1484 aa12.13□□□□□ -0.47
VPS11-209ENST00000622309 RTN4Q9NQC3 1192 aaKnown RBP12.12□□□□□ -0.47
VPS11-209ENST00000622309 DNAJC5Q9H3Z4 198 aa12.09□□□□□ -0.47
VPS11-209ENST00000622309 CC2D2AQ9P2K1 1620 aa12.09□□□□□ -0.47
VPS11-209ENST00000622309 ANP32EQ9BTT0 268 aa12.07□□□□□ -0.48
VPS11-209ENST00000622309 LOC105371045A0A1W2PR82 267 aa12.02□□□□□ -0.48
VPS11-209ENST00000622309 DIEXFQ68CQ4 756 aaKnown RBP12.02□□□□□ -0.49
VPS11-209ENST00000622309 AEBP2Q6ZN18 517 aaPredicted RBP12.01□□□□□ -0.49
VPS11-209ENST00000622309 NCBP3Q53F19 620 aaKnown RBP11.99□□□□□ -0.49
VPS11-209ENST00000622309 EIF4G1Q04637 1599 aaKnown RBP11.99□□□□□ -0.49
VPS11-209ENST00000622309 CSRNP3Q8WYN3 585 aa11.92□□□□□ -0.5
VPS11-209ENST00000622309 YTHDC1Q96MU7 727 aaKnown RBP11.91□□□□□ -0.5
VPS11-209ENST00000622309 KLHL34Q8N239 644 aa11.88□□□□□ -0.51
VPS11-209ENST00000622309 SCRIBQ14160 1630 aa11.87□□□□□ -0.51
VPS11-209ENST00000622309 TIMELESSQ9UNS1 1208 aa11.85□□□□□ -0.51
VPS11-209ENST00000622309 CCER1Q8TC90 406 aaPredicted RBP11.81□□□□□ -0.52
VPS11-209ENST00000622309 CUX2O14529 1486 aa11.77□□□□□ -0.53
VPS11-209ENST00000622309 PODXL2Q9NZ53 605 aa11.76□□□□□ -0.53
VPS11-209ENST00000622309 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.75□□□□□ -0.53
VPS11-209ENST00000622309 TSHZ2Q9NRE2 1034 aa11.75□□□□□ -0.53
VPS11-209ENST00000622309 TRIM41Q8WV44 630 aa11.7□□□□□ -0.54
VPS11-209ENST00000622309 CLSPNQ9HAW4 1339 aa11.69□□□□□ -0.54
VPS11-209ENST00000622309 ANO8Q9HCE9 1232 aaPredicted RBP11.67□□□□□ -0.54
VPS11-209ENST00000622309 SUPT16HQ9Y5B9 1047 aaKnown RBP11.67□□□□□ -0.54
VPS11-209ENST00000622309 ZNF316A6NFI3 1004 aaPredicted RBP11.66□□□□□ -0.54
VPS11-209ENST00000622309 ERCC6Q03468 1493 aa11.64□□□□□ -0.55
VPS11-209ENST00000622309 TULP1O00294 542 aaPredicted RBP11.62□□□□□ -0.55
VPS11-209ENST00000622309 MIER1Q8N108 512 aa11.62□□□□□ -0.55
VPS11-209ENST00000622309 ARXQ96QS3 562 aa11.57□□□□□ -0.56
VPS11-209ENST00000622309 RSF1Q96T23 1441 aaPredicted RBP11.55□□□□□ -0.56
VPS11-209ENST00000622309 NCAPD3P42695 1498 aa11.54□□□□□ -0.56
VPS11-209ENST00000622309 RANGAP1P46060 587 aaPredicted RBP11.53□□□□□ -0.56
VPS11-209ENST00000622309 CCDC136Q96JN2 1154 aa11.49□□□□□ -0.57
VPS11-209ENST00000622309 RBM19Q9Y4C8 960 aaKnown RBP11.45□□□□□ -0.58
VPS11-209ENST00000622309 MYT1LQ9UL68 1186 aa11.45□□□□□ -0.58
VPS11-209ENST00000622309 HMGXB3Q12766 1538 aa11.43□□□□□ -0.58
VPS11-209ENST00000622309 ATAD2BQ9ULI0 1458 aa11.43□□□□□ -0.58
VPS11-209ENST00000622309 SMARCA2P51531 1590 aa11.43□□□□□ -0.58
VPS11-209ENST00000622309 MROH2BQ7Z745 1585 aa11.42□□□□□ -0.58
VPS11-209ENST00000622309 BCANQ96GW7 911 aa11.41□□□□□ -0.58
VPS11-209ENST00000622309 PKNOX2Q96KN3 472 aa11.4□□□□□ -0.58
VPS11-209ENST00000622309 DEKP35659 375 aaKnown RBP11.38□□□□□ -0.59
VPS11-209ENST00000622309 UBE2Q2Q8WVN8 375 aa11.37□□□□□ -0.59
VPS11-209ENST00000622309 THOC2Q8NI27 1593 aaKnown RBP11.37□□□□□ -0.59
VPS11-209ENST00000622309 NESP48681 1621 aa11.37□□□□□ -0.59
VPS11-209ENST00000622309 SALL2Q9Y467 1007 aaPredicted RBP11.36□□□□□ -0.59
VPS11-209ENST00000622309 WIZO95785 1651 aa11.35□□□□□ -0.59
VPS11-209ENST00000622309 LAMC3Q9Y6N6 1575 aa11.35□□□□□ -0.59
VPS11-209ENST00000622309 KCNA4P22459 653 aa11.34□□□□□ -0.59
VPS11-209ENST00000622309 MSH5O43196 834 aa11.33□□□□□ -0.6
VPS11-209ENST00000622309 ERICH6BQ5W0A0 696 aa11.33□□□□□ -0.6
VPS11-209ENST00000622309 SMARCA4P51532 1647 aa11.33□□□□□ -0.6
VPS11-209ENST00000622309 BAZ1BQ9UIG0 1483 aaKnown RBP11.32□□□□□ -0.6
VPS11-209ENST00000622309 PDS5BQ9NTI5 1447 aa11.31□□□□□ -0.6
VPS11-209ENST00000622309 FKBP8Q14318 412 aa11.3□□□□□ -0.6
VPS11-209ENST00000622309 A0A0U1RQG5 324 aaPredicted RBP11.29□□□□□ -0.6
VPS11-209ENST00000622309 PDIA4P13667 645 aaKnown RBP11.28□□□□□ -0.6
VPS11-209ENST00000622309 NEFLP07196 543 aa11.28□□□□□ -0.6
VPS11-209ENST00000622309 BAZ1AQ9NRL2 1556 aaPredicted RBP11.26□□□□□ -0.61
VPS11-209ENST00000622309 PDE4CQ08493 712 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms