RNA–Protein interactions for RNA: ENST00000617546.4

CUL4A-212, Transcript of cullin 4A, humanhuman

TSL 1 (best) BASIC

Gene CUL4A, Length 5,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUL4A-212ENST00000617546 LCE3AQ5TA76 89 aa4.35□□□□□ -1.71
CUL4A-212ENST00000617546 PRKDCP78527 4128 aaKnown RBP4.32□□□□□ -1.72
CUL4A-212ENST00000617546 DNAH7Q8WXX0 4024 aa4.32□□□□□ -1.72
CUL4A-212ENST00000617546 LYSTQ99698 3801 aa4.31□□□□□ -1.72
CUL4A-212ENST00000617546 DNAH2Q9P225 4427 aa4.3□□□□□ -1.72
CUL4A-212ENST00000617546 LORP23490 312 aaPredicted RBP4.29□□□□□ -1.72
CUL4A-212ENST00000617546 MEGF8Q7Z7M0 2845 aa4.28□□□□□ -1.72
CUL4A-212ENST00000617546 SRRM2Q9UQ35 2752 aaKnown RBP4.23□□□□□ -1.73
CUL4A-212ENST00000617546 CSMD3Q7Z407 3707 aa4.22□□□□□ -1.73
CUL4A-212ENST00000617546 DYNC2H1Q8NCM8 4307 aaKnown RBP4.22□□□□□ -1.73
CUL4A-212ENST00000617546 DNAH9Q9NYC9 4486 aa4.21□□□□□ -1.74
CUL4A-212ENST00000617546 COL7A1Q02388 2944 aa4.2□□□□□ -1.74
CUL4A-212ENST00000617546 KRTAP4-5Q9BYR2 181 aa4.2□□□□□ -1.74
CUL4A-212ENST00000617546 DNAH11Q96DT5 4516 aa4.18□□□□□ -1.74
CUL4A-212ENST00000617546 KRTAP19-4Q3LI73 84 aa4.15□□□□□ -1.75
CUL4A-212ENST00000617546 DNAH10Q8IVF4 4471 aa4.13□□□□□ -1.75
CUL4A-212ENST00000617546 DNAH17Q9UFH2 4485 aa4.13□□□□□ -1.75
CUL4A-212ENST00000617546 FRAS1Q86XX4 4008 aa4.12□□□□□ -1.75
CUL4A-212ENST00000617546 SPRR2GQ9BYE4 73 aa4.12□□□□□ -1.75
CUL4A-212ENST00000617546 DNAH1Q9P2D7 4330 aa4.09□□□□□ -1.75
CUL4A-212ENST00000617546 DNAH6Q9C0G6 4158 aa4.08□□□□□ -1.76
CUL4A-212ENST00000617546 STARD9Q9P2P6 4700 aa4.07□□□□□ -1.76
CUL4A-212ENST00000617546 KMT2CQ8NEZ4 4911 aaKnown RBP4.06□□□□□ -1.76
CUL4A-212ENST00000617546 KRTAP8-1Q8IUC2 63 aa4.06□□□□□ -1.76
CUL4A-212ENST00000617546 SPRR5A0A1B0GTR4 108 aa4.05□□□□□ -1.76
CUL4A-212ENST00000617546 RYR3Q15413 4870 aa4.04□□□□□ -1.76
CUL4A-212ENST00000617546 VPS13DQ5THJ4 4388 aa4.04□□□□□ -1.76
CUL4A-212ENST00000617546 SACSQ9NZJ4 4579 aa4.03□□□□□ -1.76
CUL4A-212ENST00000617546 HYDINQ4G0P3 5121 aa4.01□□□□□ -1.77
CUL4A-212ENST00000617546 HECTD4Q9Y4D8 3996 aa4□□□□□ -1.77
CUL4A-212ENST00000617546 DNAH5Q8TE73 4624 aa3.99□□□□□ -1.77
CUL4A-212ENST00000617546 KMT2AQ03164 3969 aa3.99□□□□□ -1.77
CUL4A-212ENST00000617546 PLECQ15149 4684 aaKnown RBP3.99□□□□□ -1.77
CUL4A-212ENST00000617546 DNAH8Q96JB1 4490 aa3.97□□□□□ -1.77
CUL4A-212ENST00000617546 KRTAP4-1Q9BYQ7 146 aa3.97□□□□□ -1.77
CUL4A-212ENST00000617546 FAT2Q9NYQ8 4349 aa3.96□□□□□ -1.77
CUL4A-212ENST00000617546 RYR2Q92736 4967 aa3.95□□□□□ -1.78
CUL4A-212ENST00000617546 PKD1P98161 4303 aa3.95□□□□□ -1.78
CUL4A-212ENST00000617546 LCE3CQ5T5A8 94 aa3.95□□□□□ -1.78
CUL4A-212ENST00000617546 KRTAP10-5P60370 271 aa3.92□□□□□ -1.78
CUL4A-212ENST00000617546 CRCT1Q9UGL9 99 aa3.92□□□□□ -1.78
CUL4A-212ENST00000617546 DYNC1H1Q14204 4646 aaKnown RBP3.89□□□□□ -1.79
CUL4A-212ENST00000617546 MT2AP02795 61 aa3.89□□□□□ -1.79
CUL4A-212ENST00000617546 MT1HP80294 61 aa3.88□□□□□ -1.79
CUL4A-212ENST00000617546 EPPK1P58107 5090 aaKnown RBP3.84□□□□□ -1.79
CUL4A-212ENST00000617546 PKHD1P08F94 4074 aa3.84□□□□□ -1.8
CUL4A-212ENST00000617546 KRTAP19-8Q3LI54 63 aa3.83□□□□□ -1.8
CUL4A-212ENST00000617546 KRTAP19-5Q3LI72 72 aa3.83□□□□□ -1.8
CUL4A-212ENST00000617546 LRP1BQ9NZR2 4599 aa3.81□□□□□ -1.8
CUL4A-212ENST00000617546 MT1FP04733 61 aa3.78□□□□□ -1.8
CUL4A-212ENST00000617546 PKHD1L1Q86WI1 4243 aa3.74□□□□□ -1.81
CUL4A-212ENST00000617546 VPS13BQ7Z7G8 4022 aa3.74□□□□□ -1.81
CUL4A-212ENST00000617546 KRTAP19-1Q8IUB9 90 aa3.74□□□□□ -1.81
CUL4A-212ENST00000617546 APOBP04114 4563 aaKnown RBP3.7□□□□□ -1.82
CUL4A-212ENST00000617546 HSPG2P98160 4391 aa3.7□□□□□ -1.82
CUL4A-212ENST00000617546 RYR1P21817 5038 aa3.7□□□□□ -1.82
CUL4A-212ENST00000617546 FAT1Q14517 4588 aa3.69□□□□□ -1.82
CUL4A-212ENST00000617546 BIRC6Q9NR09 4857 aa3.68□□□□□ -1.82
CUL4A-212ENST00000617546 FAT3Q8TDW7 4589 aa3.67□□□□□ -1.82
CUL4A-212ENST00000617546 HERC2O95714 4834 aa3.66□□□□□ -1.82
CUL4A-212ENST00000617546 MT1XP80297 61 aa3.66□□□□□ -1.82
CUL4A-212ENST00000617546 KRTAP10-7P60409 375 aaPredicted RBP3.64□□□□□ -1.83
CUL4A-212ENST00000617546 PCLOQ9Y6V0 5065 aa3.59□□□□□ -1.83
CUL4A-212ENST00000617546 KIAA1109Q2LD37 5005 aa3.59□□□□□ -1.84
CUL4A-212ENST00000617546 MT1BP07438 61 aa3.58□□□□□ -1.84
CUL4A-212ENST00000617546 ABCA13Q86UQ4 5058 aa3.58□□□□□ -1.84
CUL4A-212ENST00000617546 KRTAP17-1Q9BYP8 105 aa3.57□□□□□ -1.84
CUL4A-212ENST00000617546 LRP1Q07954 4544 aaKnown RBP3.57□□□□□ -1.84
CUL4A-212ENST00000617546 MYCBP2O75592 4640 aa3.56□□□□□ -1.84
CUL4A-212ENST00000617546 HERC1Q15751 4861 aa3.56□□□□□ -1.84
CUL4A-212ENST00000617546 KRTAP12-4P60329 112 aa3.56□□□□□ -1.84
CUL4A-212ENST00000617546 TNXBP22105 4242 aa3.5□□□□□ -1.85
CUL4A-212ENST00000617546 KRTAP9-8Q9BYQ0 159 aa3.48□□□□□ -1.85
CUL4A-212ENST00000617546 MT1GP13640 62 aa3.44□□□□□ -1.86
CUL4A-212ENST00000617546 SPRR2FQ96RM1 72 aa3.43□□□□□ -1.86
CUL4A-212ENST00000617546 LCE2CQ5TA81 110 aa3.42□□□□□ -1.86
CUL4A-212ENST00000617546 KRTAP19-2Q3LHN2 52 aa3.41□□□□□ -1.86
CUL4A-212ENST00000617546 KRTAP9-3Q9BYQ3 159 aa3.41□□□□□ -1.86
CUL4A-212ENST00000617546 MT1LQ93083 61 aa3.4□□□□□ -1.87
CUL4A-212ENST00000617546 LCE3EQ5T5B0 92 aa3.39□□□□□ -1.87
CUL4A-212ENST00000617546 LCE3DQ9BYE3 92 aa3.39□□□□□ -1.87
CUL4A-212ENST00000617546 LCE3BQ5TA77 95 aa3.38□□□□□ -1.87
CUL4A-212ENST00000617546 MT1EP04732 61 aa3.32□□□□□ -1.88
CUL4A-212ENST00000617546 HMCN2Q8NDA2 5059 aa3.3□□□□□ -1.88
CUL4A-212ENST00000617546 KRTAP2-3P0C7H8 128 aa3.28□□□□□ -1.88
CUL4A-212ENST00000617546 KRTAP2-4Q9BYR9 128 aa3.28□□□□□ -1.88
CUL4A-212ENST00000617546 KRTAP2-1Q9BYU5 128 aa3.28□□□□□ -1.88
CUL4A-212ENST00000617546 KRTAP4-8A0A0G2JLE6 195 aa3.28□□□□□ -1.89
CUL4A-212ENST00000617546 KRTAP4-8Q9BYQ9 185 aa3.28□□□□□ -1.89
CUL4A-212ENST00000617546 KRTAP19-3Q7Z4W3 81 aa3.26□□□□□ -1.89
CUL4A-212ENST00000617546 MUC17Q685J3 4493 aa3.24□□□□□ -1.89
CUL4A-212ENST00000617546 SPRR2EP22531 72 aa3.22□□□□□ -1.89
CUL4A-212ENST00000617546 SPRR2BP35325 72 aa3.22□□□□□ -1.89
CUL4A-212ENST00000617546 SPRR2AP35326 72 aa3.22□□□□□ -1.89
CUL4A-212ENST00000617546 LRP2P98164 4655 aa3.19□□□□□ -1.9
CUL4A-212ENST00000617546 LPAP08519 4548 aa3.19□□□□□ -1.9
CUL4A-212ENST00000617546 FLGP20930 4061 aaPredicted RBP3.18□□□□□ -1.9
CUL4A-212ENST00000617546 LCE2BO14633 110 aa3.16□□□□□ -1.9
CUL4A-212ENST00000617546 KRTAP4-7Q9BYR0 210 aa3.15□□□□□ -1.9
CUL4A-212ENST00000617546 LCE2DQ5TA82 110 aaPredicted RBP3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms