RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 KRTAP21-3Q3LHN1 58 aa6.97□□□□□ -1.29
MSH6-214ENST00000616033 RPL37P61927 97 aaKnown RBP6.91□□□□□ -1.3
MSH6-214ENST00000616033 KRTAP13-4Q3LI77 160 aa6.9□□□□□ -1.31
MSH6-214ENST00000616033 LUZP6Q538Z0 58 aa6.87□□□□□ -1.31
MSH6-214ENST00000616033 RYR2Q92736 4967 aa6.86□□□□□ -1.31
MSH6-214ENST00000616033 MYCBP2O75592 4640 aa6.85□□□□□ -1.31
MSH6-214ENST00000616033 APOBP04114 4563 aaKnown RBP6.81□□□□□ -1.32
MSH6-214ENST00000616033 KRTAP15-1Q3LI76 137 aa6.8□□□□□ -1.32
MSH6-214ENST00000616033 KRTAP10-6P60371 365 aaPredicted RBP6.79□□□□□ -1.32
MSH6-214ENST00000616033 RYR3Q15413 4870 aa6.78□□□□□ -1.32
MSH6-214ENST00000616033 A0A1B0GVY2 172 aa6.78□□□□□ -1.32
MSH6-214ENST00000616033 LRP1Q07954 4544 aaKnown RBP6.76□□□□□ -1.33
MSH6-214ENST00000616033 KRTAP10-8P60410 259 aa6.75□□□□□ -1.33
MSH6-214ENST00000616033 S4R3F8 94 aa6.74□□□□□ -1.33
MSH6-214ENST00000616033 KIAA1109Q2LD37 5005 aa6.72□□□□□ -1.33
MSH6-214ENST00000616033 RPS29P62273 56 aaKnown RBP6.72□□□□□ -1.33
MSH6-214ENST00000616033 KRTAP3-3Q9BYR6 98 aa6.72□□□□□ -1.33
MSH6-214ENST00000616033 KRTAP12-2P59991 146 aa6.72□□□□□ -1.33
MSH6-214ENST00000616033 KRTAP3-2Q9BYR7 98 aa6.68□□□□□ -1.34
MSH6-214ENST00000616033 Q5VSD8 79 aa6.67□□□□□ -1.34
MSH6-214ENST00000616033 HSPG2P98160 4391 aa6.65□□□□□ -1.34
MSH6-214ENST00000616033 KRTAP10-4P60372 401 aaPredicted RBP6.64□□□□□ -1.35
MSH6-214ENST00000616033 KRTAP17-1Q9BYP8 105 aa6.61□□□□□ -1.35
MSH6-214ENST00000616033 EPPK1P58107 5090 aaKnown RBP6.59□□□□□ -1.35
MSH6-214ENST00000616033 FAT3Q8TDW7 4589 aa6.56□□□□□ -1.36
MSH6-214ENST00000616033 RYR1P21817 5038 aa6.55□□□□□ -1.36
MSH6-214ENST00000616033 KRTAP12-1P59990 96 aa6.55□□□□□ -1.36
MSH6-214ENST00000616033 XP32Q5T750 250 aa6.55□□□□□ -1.36
MSH6-214ENST00000616033 PKHD1L1Q86WI1 4243 aa6.51□□□□□ -1.37
MSH6-214ENST00000616033 LPAP08519 4548 aa6.51□□□□□ -1.37
MSH6-214ENST00000616033 M0QZ58 72 aa6.47□□□□□ -1.37
MSH6-214ENST00000616033 PLAC4Q8WY50 150 aa6.44□□□□□ -1.38
MSH6-214ENST00000616033 KRTAP4-5Q9BYR2 181 aa6.44□□□□□ -1.38
MSH6-214ENST00000616033 LRP2P98164 4655 aa6.42□□□□□ -1.38
MSH6-214ENST00000616033 R4GN34 69 aa6.41□□□□□ -1.38
MSH6-214ENST00000616033 TNXBP22105 4242 aa6.39□□□□□ -1.39
MSH6-214ENST00000616033 ABCA13Q86UQ4 5058 aa6.34□□□□□ -1.39
MSH6-214ENST00000616033 MT1HL1P0DM35 61 aa6.32□□□□□ -1.4
MSH6-214ENST00000616033 LORP23490 312 aaPredicted RBP6.25□□□□□ -1.41
MSH6-214ENST00000616033 J3QL48 77 aa6.25□□□□□ -1.41
MSH6-214ENST00000616033 HERC2O95714 4834 aa6.22□□□□□ -1.41
MSH6-214ENST00000616033 CAMK2N1Q7Z7J9 78 aa6.21□□□□□ -1.41
MSH6-214ENST00000616033 MUC2Q02817 5179 aa6.09□□□□□ -1.43
MSH6-214ENST00000616033 SEC61BP60468 96 aaKnown RBP6.05□□□□□ -1.44
MSH6-214ENST00000616033 HERC1Q15751 4861 aa6.05□□□□□ -1.44
MSH6-214ENST00000616033 BIRC6Q9NR09 4857 aa6.01□□□□□ -1.45
MSH6-214ENST00000616033 PCLOQ9Y6V0 5065 aa5.98□□□□□ -1.45
MSH6-214ENST00000616033 KRTAP4-1Q9BYQ7 146 aa5.93□□□□□ -1.46
MSH6-214ENST00000616033 RNF213Q63HN8 5207 aa5.87□□□□□ -1.47
MSH6-214ENST00000616033 PP632Q6XCG6 107 aa5.84□□□□□ -1.47
MSH6-214ENST00000616033 TNP1P09430 55 aa5.82□□□□□ -1.48
MSH6-214ENST00000616033 FAT4Q6V0I7 4981 aa5.78□□□□□ -1.48
MSH6-214ENST00000616033 MUC17Q685J3 4493 aa5.76□□□□□ -1.49
MSH6-214ENST00000616033 UBR4Q5T4S7 5183 aa5.76□□□□□ -1.49
MSH6-214ENST00000616033 HMCN2Q8NDA2 5059 aa5.72□□□□□ -1.49
MSH6-214ENST00000616033 PRO2289Q9P1D8 64 aa5.64□□□□□ -1.51
MSH6-214ENST00000616033 M0R2T5 61 aa5.63□□□□□ -1.51
MSH6-214ENST00000616033 KRTAP19-2Q3LHN2 52 aa5.57□□□□□ -1.52
MSH6-214ENST00000616033 LCE3AQ5TA76 89 aa5.52□□□□□ -1.53
MSH6-214ENST00000616033 FLGP20930 4061 aaPredicted RBP5.51□□□□□ -1.53
MSH6-214ENST00000616033 SPRR5A0A1B0GTR4 108 aa5.44□□□□□ -1.54
MSH6-214ENST00000616033 LCE2CQ5TA81 110 aa5.39□□□□□ -1.55
MSH6-214ENST00000616033 KRTAP10-10P60014 251 aa5.39□□□□□ -1.55
MSH6-214ENST00000616033 KRTAP19-1Q8IUB9 90 aa5.33□□□□□ -1.56
MSH6-214ENST00000616033 MT1HP80294 61 aa5.33□□□□□ -1.56
MSH6-214ENST00000616033 KRTAP23-1A1A580 65 aa5.32□□□□□ -1.56
MSH6-214ENST00000616033 INE1O15225 51 aa5.31□□□□□ -1.56
MSH6-214ENST00000616033 SPRR2GQ9BYE4 73 aa5.25□□□□□ -1.57
MSH6-214ENST00000616033 MT1FP04733 61 aa5.23□□□□□ -1.57
MSH6-214ENST00000616033 MT2AP02795 61 aa5.2□□□□□ -1.58
MSH6-214ENST00000616033 KRTAP12-3P60328 96 aa5.19□□□□□ -1.58
MSH6-214ENST00000616033 USH2AO75445 5202 aa5.14□□□□□ -1.59
MSH6-214ENST00000616033 KRTAP10-12P60413 245 aa5.14□□□□□ -1.59
MSH6-214ENST00000616033 KRTAP9-8Q9BYQ0 159 aa5.13□□□□□ -1.59
MSH6-214ENST00000616033 KMT2DO14686 5537 aa5.13□□□□□ -1.59
MSH6-214ENST00000616033 KRTAP8-1Q8IUC2 63 aa5.12□□□□□ -1.59
MSH6-214ENST00000616033 FSIP2Q5CZC0 6907 aa5.09□□□□□ -1.6
MSH6-214ENST00000616033 KRTAP10-7P60409 375 aaPredicted RBP5.09□□□□□ -1.6
MSH6-214ENST00000616033 KRTAP10-5P60370 271 aa5.06□□□□□ -1.6
MSH6-214ENST00000616033 MT1XP80297 61 aa5.05□□□□□ -1.6
MSH6-214ENST00000616033 MT1BP07438 61 aa5□□□□□ -1.61
MSH6-214ENST00000616033 KRTAP19-5Q3LI72 72 aa4.91□□□□□ -1.62
MSH6-214ENST00000616033 KRTAP9-3Q9BYQ3 159 aa4.91□□□□□ -1.62
MSH6-214ENST00000616033 KRTAP19-8Q3LI54 63 aa4.9□□□□□ -1.62
MSH6-214ENST00000616033 KRTAP4-8A0A0G2JLE6 195 aa4.84□□□□□ -1.63
MSH6-214ENST00000616033 LCE2BO14633 110 aa4.84□□□□□ -1.63
MSH6-214ENST00000616033 KRTAP4-8Q9BYQ9 185 aa4.84□□□□□ -1.63
MSH6-214ENST00000616033 LCE3CQ5T5A8 94 aa4.82□□□□□ -1.64
MSH6-214ENST00000616033 KRTAP4-7Q9BYR0 210 aa4.82□□□□□ -1.64
MSH6-214ENST00000616033 LCE2AQ5TA79 106 aaPredicted RBP4.77□□□□□ -1.65
MSH6-214ENST00000616033 KRTAP9-6A8MVA2 160 aa4.76□□□□□ -1.65
MSH6-214ENST00000616033 OBSCNQ5VST9 7968 aa4.72□□□□□ -1.65
MSH6-214ENST00000616033 SSPOA2VEC9 5147 aa4.66□□□□□ -1.66
MSH6-214ENST00000616033 CRCT1Q9UGL9 99 aa4.6□□□□□ -1.67
MSH6-214ENST00000616033 DSTQ03001 7570 aaKnown RBP4.58□□□□□ -1.68
MSH6-214ENST00000616033 SYNE1Q8NF91 8797 aaKnown RBP4.56□□□□□ -1.68
MSH6-214ENST00000616033 FCGBPQ9Y6R7 5405 aaPredicted RBP4.5□□□□□ -1.69
MSH6-214ENST00000616033 KRTAP19-7Q3SYF9 63 aa4.48□□□□□ -1.69
MSH6-214ENST00000616033 LOC100996750A0A140TA64 210 aa4.47□□□□□ -1.69
MSH6-214ENST00000616033 KRTAP2-3P0C7H8 128 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms