RNA–Protein interactions for RNA: ENST00000613459.4

HMGXB3-206, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-206ENST00000613459 CSMD3Q7Z407 3707 aa7.23□□□□□ -1.25
HMGXB3-206ENST00000613459 LORP23490 312 aaPredicted RBP7.22□□□□□ -1.25
HMGXB3-206ENST00000613459 AKAP9Q99996 3911 aa7.22□□□□□ -1.25
HMGXB3-206ENST00000613459 KRTAP10-5P60370 271 aa7.12□□□□□ -1.27
HMGXB3-206ENST00000613459 KRTAP8-1Q8IUC2 63 aa7.11□□□□□ -1.27
HMGXB3-206ENST00000613459 DNAH9Q9NYC9 4486 aa7.09□□□□□ -1.27
HMGXB3-206ENST00000613459 DNAH5Q8TE73 4624 aa7.05□□□□□ -1.28
HMGXB3-206ENST00000613459 DNAH10Q8IVF4 4471 aa6.98□□□□□ -1.29
HMGXB3-206ENST00000613459 DNAH1Q9P2D7 4330 aa6.96□□□□□ -1.29
HMGXB3-206ENST00000613459 DNAH2Q9P225 4427 aa6.91□□□□□ -1.3
HMGXB3-206ENST00000613459 KRTAP19-4Q3LI73 84 aa6.91□□□□□ -1.3
HMGXB3-206ENST00000613459 KRTAP4-1Q9BYQ7 146 aa6.9□□□□□ -1.3
HMGXB3-206ENST00000613459 SPRR2GQ9BYE4 73 aa6.9□□□□□ -1.3
HMGXB3-206ENST00000613459 ZNF469Q96JG9 3925 aaPredicted RBP6.89□□□□□ -1.31
HMGXB3-206ENST00000613459 DNAH11Q96DT5 4516 aa6.89□□□□□ -1.31
HMGXB3-206ENST00000613459 PLECQ15149 4684 aaKnown RBP6.87□□□□□ -1.31
HMGXB3-206ENST00000613459 MT1HP80294 61 aa6.84□□□□□ -1.31
HMGXB3-206ENST00000613459 DNAH8Q96JB1 4490 aa6.83□□□□□ -1.32
HMGXB3-206ENST00000613459 DNAH17Q9UFH2 4485 aa6.82□□□□□ -1.32
HMGXB3-206ENST00000613459 MT2AP02795 61 aa6.79□□□□□ -1.32
HMGXB3-206ENST00000613459 VPS13DQ5THJ4 4388 aa6.78□□□□□ -1.32
HMGXB3-206ENST00000613459 DNAH3Q8TD57 4116 aa6.71□□□□□ -1.34
HMGXB3-206ENST00000613459 DYNC1H1Q14204 4646 aaKnown RBP6.68□□□□□ -1.34
HMGXB3-206ENST00000613459 FAT1Q14517 4588 aa6.64□□□□□ -1.35
HMGXB3-206ENST00000613459 KRTAP10-7P60409 375 aaPredicted RBP6.63□□□□□ -1.35
HMGXB3-206ENST00000613459 LCE3CQ5T5A8 94 aa6.63□□□□□ -1.35
HMGXB3-206ENST00000613459 LRP1BQ9NZR2 4599 aa6.62□□□□□ -1.35
HMGXB3-206ENST00000613459 DNHD1Q96M86 4753 aa6.61□□□□□ -1.35
HMGXB3-206ENST00000613459 KRTAP19-5Q3LI72 72 aa6.6□□□□□ -1.35
HMGXB3-206ENST00000613459 ANK2Q01484 3957 aa6.58□□□□□ -1.36
HMGXB3-206ENST00000613459 MT1FP04733 61 aa6.58□□□□□ -1.36
HMGXB3-206ENST00000613459 SACSQ9NZJ4 4579 aa6.57□□□□□ -1.36
HMGXB3-206ENST00000613459 DYNC2H1Q8NCM8 4307 aaKnown RBP6.54□□□□□ -1.36
HMGXB3-206ENST00000613459 FAT2Q9NYQ8 4349 aa6.52□□□□□ -1.37
HMGXB3-206ENST00000613459 STARD9Q9P2P6 4700 aa6.52□□□□□ -1.37
HMGXB3-206ENST00000613459 SPRR2FQ96RM1 72 aa6.49□□□□□ -1.37
HMGXB3-206ENST00000613459 RYR1P21817 5038 aa6.49□□□□□ -1.37
HMGXB3-206ENST00000613459 FRAS1Q86XX4 4008 aa6.48□□□□□ -1.37
HMGXB3-206ENST00000613459 KRTAP19-8Q3LI54 63 aa6.4□□□□□ -1.38
HMGXB3-206ENST00000613459 SPRR5A0A1B0GTR4 108 aa6.39□□□□□ -1.39
HMGXB3-206ENST00000613459 APOBP04114 4563 aaKnown RBP6.37□□□□□ -1.39
HMGXB3-206ENST00000613459 VPS13BQ7Z7G8 4022 aa6.35□□□□□ -1.39
HMGXB3-206ENST00000613459 KMT2AQ03164 3969 aa6.26□□□□□ -1.41
HMGXB3-206ENST00000613459 PRKDCP78527 4128 aaKnown RBP6.25□□□□□ -1.41
HMGXB3-206ENST00000613459 CMYA5Q8N3K9 4069 aa6.24□□□□□ -1.41
HMGXB3-206ENST00000613459 KRTAP19-1Q8IUB9 90 aa6.24□□□□□ -1.41
HMGXB3-206ENST00000613459 LYSTQ99698 3801 aa6.23□□□□□ -1.41
HMGXB3-206ENST00000613459 HECTD4Q9Y4D8 3996 aa6.22□□□□□ -1.41
HMGXB3-206ENST00000613459 DNAH6Q9C0G6 4158 aa6.2□□□□□ -1.42
HMGXB3-206ENST00000613459 RYR3Q15413 4870 aa6.19□□□□□ -1.42
HMGXB3-206ENST00000613459 KRTAP17-1Q9BYP8 105 aa6.18□□□□□ -1.42
HMGXB3-206ENST00000613459 LRP1Q07954 4544 aaKnown RBP6.13□□□□□ -1.43
HMGXB3-206ENST00000613459 MT1XP80297 61 aa6.12□□□□□ -1.43
HMGXB3-206ENST00000613459 FAT3Q8TDW7 4589 aa6.11□□□□□ -1.43
HMGXB3-206ENST00000613459 SPRR2EP22531 72 aa6.11□□□□□ -1.43
HMGXB3-206ENST00000613459 SPRR2BP35325 72 aa6.11□□□□□ -1.43
HMGXB3-206ENST00000613459 SPRR2AP35326 72 aa6.11□□□□□ -1.43
HMGXB3-206ENST00000613459 HERC1Q15751 4861 aa6.1□□□□□ -1.43
HMGXB3-206ENST00000613459 MYCBP2O75592 4640 aa6.09□□□□□ -1.43
HMGXB3-206ENST00000613459 LCE3BQ5TA77 95 aa6.08□□□□□ -1.44
HMGXB3-206ENST00000613459 DNAH7Q8WXX0 4024 aa6.07□□□□□ -1.44
HMGXB3-206ENST00000613459 KRTAP12-4P60329 112 aa6.07□□□□□ -1.44
HMGXB3-206ENST00000613459 KIAA1109Q2LD37 5005 aa6.06□□□□□ -1.44
HMGXB3-206ENST00000613459 RYR2Q92736 4967 aa6.04□□□□□ -1.44
HMGXB3-206ENST00000613459 MT1BP07438 61 aa6.02□□□□□ -1.45
HMGXB3-206ENST00000613459 MT1GP13640 62 aa6.01□□□□□ -1.45
HMGXB3-206ENST00000613459 KRTAP9-8Q9BYQ0 159 aa5.98□□□□□ -1.45
HMGXB3-206ENST00000613459 HSPG2P98160 4391 aa5.98□□□□□ -1.45
HMGXB3-206ENST00000613459 LCE2BO14633 110 aa5.95□□□□□ -1.46
HMGXB3-206ENST00000613459 SPRR2DP22532 72 aa5.94□□□□□ -1.46
HMGXB3-206ENST00000613459 LCE2CQ5TA81 110 aa5.88□□□□□ -1.47
HMGXB3-206ENST00000613459 LCE3DQ9BYE3 92 aa5.86□□□□□ -1.47
HMGXB3-206ENST00000613459 KRTAP9-3Q9BYQ3 159 aa5.85□□□□□ -1.47
HMGXB3-206ENST00000613459 LCE3EQ5T5B0 92 aa5.81□□□□□ -1.48
HMGXB3-206ENST00000613459 KRTAP4-8A0A0G2JLE6 195 aa5.81□□□□□ -1.48
HMGXB3-206ENST00000613459 KRTAP4-8Q9BYQ9 185 aa5.81□□□□□ -1.48
HMGXB3-206ENST00000613459 PKD1P98161 4303 aa5.77□□□□□ -1.49
HMGXB3-206ENST00000613459 HERC2O95714 4834 aa5.73□□□□□ -1.49
HMGXB3-206ENST00000613459 MT1LQ93083 61 aa5.71□□□□□ -1.5
HMGXB3-206ENST00000613459 KRTAP19-3Q7Z4W3 81 aa5.71□□□□□ -1.5
HMGXB3-206ENST00000613459 LRP2P98164 4655 aa5.69□□□□□ -1.5
HMGXB3-206ENST00000613459 PKHD1L1Q86WI1 4243 aa5.66□□□□□ -1.5
HMGXB3-206ENST00000613459 BIRC6Q9NR09 4857 aa5.65□□□□□ -1.51
HMGXB3-206ENST00000613459 HYDINQ4G0P3 5121 aa5.64□□□□□ -1.51
HMGXB3-206ENST00000613459 KRTAP19-2Q3LHN2 52 aa5.6□□□□□ -1.51
HMGXB3-206ENST00000613459 PCLOQ9Y6V0 5065 aa5.59□□□□□ -1.51
HMGXB3-206ENST00000613459 MT1EP04732 61 aa5.57□□□□□ -1.52
HMGXB3-206ENST00000613459 PKHD1P08F94 4074 aa5.51□□□□□ -1.53
HMGXB3-206ENST00000613459 LPAP08519 4548 aa5.49□□□□□ -1.53
HMGXB3-206ENST00000613459 KRTAP4-7Q9BYR0 210 aa5.48□□□□□ -1.53
HMGXB3-206ENST00000613459 MT3P25713 68 aa5.48□□□□□ -1.53
HMGXB3-206ENST00000613459 TNXBP22105 4242 aa5.47□□□□□ -1.53
HMGXB3-206ENST00000613459 LCE2DQ5TA82 110 aaPredicted RBP5.42□□□□□ -1.54
HMGXB3-206ENST00000613459 MUC17Q685J3 4493 aa5.41□□□□□ -1.54
HMGXB3-206ENST00000613459 KMT2CQ8NEZ4 4911 aaKnown RBP5.41□□□□□ -1.54
HMGXB3-206ENST00000613459 MT1MQ8N339 61 aa5.41□□□□□ -1.54
HMGXB3-206ENST00000613459 PRM1P04553 51 aa5.38□□□□□ -1.55
HMGXB3-206ENST00000613459 FLGP20930 4061 aaPredicted RBP5.37□□□□□ -1.55
HMGXB3-206ENST00000613459 KRTAP19-6Q3LI70 58 aa5.35□□□□□ -1.55
HMGXB3-206ENST00000613459 EPPK1P58107 5090 aaKnown RBP5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms