RNA–Protein interactions for RNA: ENST00000591545.5

SMARCA4-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 5,193 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-216ENST00000591545 DNAH3Q8TD57 4116 aa6.2□□□□□ -1.42
SMARCA4-216ENST00000591545 ANK2Q01484 3957 aa6.2□□□□□ -1.42
SMARCA4-216ENST00000591545 STARD9Q9P2P6 4700 aa6.19□□□□□ -1.42
SMARCA4-216ENST00000591545 KRTAP10-4P60372 401 aaPredicted RBP6.18□□□□□ -1.42
SMARCA4-216ENST00000591545 KRTAP15-1Q3LI76 137 aa6.18□□□□□ -1.42
SMARCA4-216ENST00000591545 DNAH17Q9UFH2 4485 aa6.17□□□□□ -1.42
SMARCA4-216ENST00000591545 DNAH11Q96DT5 4516 aa6.14□□□□□ -1.43
SMARCA4-216ENST00000591545 PRKDCP78527 4128 aaKnown RBP6.11□□□□□ -1.43
SMARCA4-216ENST00000591545 DNHD1Q96M86 4753 aa6.1□□□□□ -1.43
SMARCA4-216ENST00000591545 DNAH5Q8TE73 4624 aa6.09□□□□□ -1.43
SMARCA4-216ENST00000591545 INE1O15225 51 aa6.08□□□□□ -1.44
SMARCA4-216ENST00000591545 DNAH2Q9P225 4427 aa6.05□□□□□ -1.44
SMARCA4-216ENST00000591545 KMT2AQ03164 3969 aa6.03□□□□□ -1.44
SMARCA4-216ENST00000591545 DNAH8Q96JB1 4490 aa6.02□□□□□ -1.45
SMARCA4-216ENST00000591545 LYSTQ99698 3801 aa6.02□□□□□ -1.45
SMARCA4-216ENST00000591545 KRTAP3-2Q9BYR7 98 aa6□□□□□ -1.45
SMARCA4-216ENST00000591545 DYNC2H1Q8NCM8 4307 aaKnown RBP6□□□□□ -1.45
SMARCA4-216ENST00000591545 KRTAP3-3Q9BYR6 98 aa5.95□□□□□ -1.46
SMARCA4-216ENST00000591545 LRP1BQ9NZR2 4599 aa5.93□□□□□ -1.46
SMARCA4-216ENST00000591545 DYNC1H1Q14204 4646 aaKnown RBP5.92□□□□□ -1.46
SMARCA4-216ENST00000591545 DNAH7Q8WXX0 4024 aa5.92□□□□□ -1.46
SMARCA4-216ENST00000591545 KRTAP23-1A1A580 65 aa5.92□□□□□ -1.46
SMARCA4-216ENST00000591545 FRAS1Q86XX4 4008 aa5.88□□□□□ -1.47
SMARCA4-216ENST00000591545 KRTAP10-12P60413 245 aa5.88□□□□□ -1.47
SMARCA4-216ENST00000591545 HECTD4Q9Y4D8 3996 aa5.86□□□□□ -1.47
SMARCA4-216ENST00000591545 FAT1Q14517 4588 aa5.86□□□□□ -1.47
SMARCA4-216ENST00000591545 VPS13BQ7Z7G8 4022 aa5.82□□□□□ -1.48
SMARCA4-216ENST00000591545 FAT2Q9NYQ8 4349 aa5.81□□□□□ -1.48
SMARCA4-216ENST00000591545 DNAH6Q9C0G6 4158 aa5.8□□□□□ -1.48
SMARCA4-216ENST00000591545 SACSQ9NZJ4 4579 aa5.8□□□□□ -1.48
SMARCA4-216ENST00000591545 KRTAP12-3P60328 96 aa5.74□□□□□ -1.49
SMARCA4-216ENST00000591545 CRCT1Q9UGL9 99 aa5.67□□□□□ -1.5
SMARCA4-216ENST00000591545 HYDINQ4G0P3 5121 aa5.66□□□□□ -1.5
SMARCA4-216ENST00000591545 LCE3AQ5TA76 89 aa5.62□□□□□ -1.51
SMARCA4-216ENST00000591545 KRTAP8-1Q8IUC2 63 aa5.6□□□□□ -1.51
SMARCA4-216ENST00000591545 APOBP04114 4563 aaKnown RBP5.59□□□□□ -1.51
SMARCA4-216ENST00000591545 RYR1P21817 5038 aa5.57□□□□□ -1.52
SMARCA4-216ENST00000591545 MT1HP80294 61 aa5.57□□□□□ -1.52
SMARCA4-216ENST00000591545 LORP23490 312 aaPredicted RBP5.55□□□□□ -1.52
SMARCA4-216ENST00000591545 KRTAP4-1Q9BYQ7 146 aa5.54□□□□□ -1.52
SMARCA4-216ENST00000591545 PKHD1P08F94 4074 aa5.52□□□□□ -1.53
SMARCA4-216ENST00000591545 KRTAP17-1Q9BYP8 105 aa5.51□□□□□ -1.53
SMARCA4-216ENST00000591545 RYR2Q92736 4967 aa5.51□□□□□ -1.53
SMARCA4-216ENST00000591545 LRP1Q07954 4544 aaKnown RBP5.5□□□□□ -1.53
SMARCA4-216ENST00000591545 PKD1P98161 4303 aa5.5□□□□□ -1.53
SMARCA4-216ENST00000591545 MYCBP2O75592 4640 aa5.49□□□□□ -1.53
SMARCA4-216ENST00000591545 RYR3Q15413 4870 aa5.46□□□□□ -1.54
SMARCA4-216ENST00000591545 KIAA1109Q2LD37 5005 aa5.46□□□□□ -1.54
SMARCA4-216ENST00000591545 MT2AP02795 61 aa5.45□□□□□ -1.54
SMARCA4-216ENST00000591545 FAT3Q8TDW7 4589 aa5.44□□□□□ -1.54
SMARCA4-216ENST00000591545 HSPG2P98160 4391 aa5.37□□□□□ -1.55
SMARCA4-216ENST00000591545 SPRR2GQ9BYE4 73 aa5.34□□□□□ -1.56
SMARCA4-216ENST00000591545 MT1FP04733 61 aa5.31□□□□□ -1.56
SMARCA4-216ENST00000591545 KRTAP10-5P60370 271 aa5.31□□□□□ -1.56
SMARCA4-216ENST00000591545 KMT2CQ8NEZ4 4911 aaKnown RBP5.28□□□□□ -1.56
SMARCA4-216ENST00000591545 PKHD1L1Q86WI1 4243 aa5.28□□□□□ -1.56
SMARCA4-216ENST00000591545 SPRR2FQ96RM1 72 aa5.24□□□□□ -1.57
SMARCA4-216ENST00000591545 BIRC6Q9NR09 4857 aa5.24□□□□□ -1.57
SMARCA4-216ENST00000591545 TNXBP22105 4242 aa5.22□□□□□ -1.57
SMARCA4-216ENST00000591545 LRP2P98164 4655 aa5.18□□□□□ -1.58
SMARCA4-216ENST00000591545 HERC2O95714 4834 aa5.17□□□□□ -1.58
SMARCA4-216ENST00000591545 KRTAP19-4Q3LI73 84 aa5.16□□□□□ -1.58
SMARCA4-216ENST00000591545 KRTAP10-7P60409 375 aaPredicted RBP5.14□□□□□ -1.59
SMARCA4-216ENST00000591545 LPAP08519 4548 aa5.12□□□□□ -1.59
SMARCA4-216ENST00000591545 EPPK1P58107 5090 aaKnown RBP5.05□□□□□ -1.6
SMARCA4-216ENST00000591545 KRTAP19-5Q3LI72 72 aa5.03□□□□□ -1.6
SMARCA4-216ENST00000591545 LCE3CQ5T5A8 94 aa5.02□□□□□ -1.61
SMARCA4-216ENST00000591545 KRTAP19-8Q3LI54 63 aa5.01□□□□□ -1.61
SMARCA4-216ENST00000591545 SPRR2EP22531 72 aa4.97□□□□□ -1.61
SMARCA4-216ENST00000591545 SPRR2BP35325 72 aa4.97□□□□□ -1.61
SMARCA4-216ENST00000591545 SPRR2AP35326 72 aa4.97□□□□□ -1.61
SMARCA4-216ENST00000591545 KRTAP19-1Q8IUB9 90 aa4.94□□□□□ -1.62
SMARCA4-216ENST00000591545 HERC1Q15751 4861 aa4.94□□□□□ -1.62
SMARCA4-216ENST00000591545 ABCA13Q86UQ4 5058 aa4.9□□□□□ -1.63
SMARCA4-216ENST00000591545 LCE2CQ5TA81 110 aa4.87□□□□□ -1.63
SMARCA4-216ENST00000591545 KRTAP9-8Q9BYQ0 159 aa4.86□□□□□ -1.63
SMARCA4-216ENST00000591545 KRTAP19-2Q3LHN2 52 aa4.85□□□□□ -1.63
SMARCA4-216ENST00000591545 SPRR5A0A1B0GTR4 108 aa4.84□□□□□ -1.64
SMARCA4-216ENST00000591545 PCLOQ9Y6V0 5065 aa4.83□□□□□ -1.64
SMARCA4-216ENST00000591545 SPRR2DP22532 72 aa4.82□□□□□ -1.64
SMARCA4-216ENST00000591545 MT1BP07438 61 aa4.8□□□□□ -1.64
SMARCA4-216ENST00000591545 MT1XP80297 61 aa4.78□□□□□ -1.64
SMARCA4-216ENST00000591545 LCE2BO14633 110 aa4.77□□□□□ -1.65
SMARCA4-216ENST00000591545 KRTAP9-3Q9BYQ3 159 aa4.77□□□□□ -1.65
SMARCA4-216ENST00000591545 FLGP20930 4061 aaPredicted RBP4.76□□□□□ -1.65
SMARCA4-216ENST00000591545 MUC17Q685J3 4493 aa4.73□□□□□ -1.65
SMARCA4-216ENST00000591545 MT1GP13640 62 aa4.67□□□□□ -1.66
SMARCA4-216ENST00000591545 KRTAP12-4P60329 112 aa4.66□□□□□ -1.66
SMARCA4-216ENST00000591545 KRTAP4-8A0A0G2JLE6 195 aa4.6□□□□□ -1.67
SMARCA4-216ENST00000591545 KRTAP4-8Q9BYQ9 185 aa4.6□□□□□ -1.67
SMARCA4-216ENST00000591545 KRTAP9-2Q9BYQ4 174 aa4.58□□□□□ -1.68
SMARCA4-216ENST00000591545 LCE3BQ5TA77 95 aa4.55□□□□□ -1.68
SMARCA4-216ENST00000591545 RNF213Q63HN8 5207 aa4.52□□□□□ -1.69
SMARCA4-216ENST00000591545 HMCN2Q8NDA2 5059 aa4.51□□□□□ -1.69
SMARCA4-216ENST00000591545 MUC2Q02817 5179 aa4.5□□□□□ -1.69
SMARCA4-216ENST00000591545 FAT4Q6V0I7 4981 aa4.49□□□□□ -1.69
SMARCA4-216ENST00000591545 KRTAP19-3Q7Z4W3 81 aa4.48□□□□□ -1.69
SMARCA4-216ENST00000591545 KRTAP19-6Q3LI70 58 aa4.45□□□□□ -1.7
SMARCA4-216ENST00000591545 LCE2DQ5TA82 110 aaPredicted RBP4.45□□□□□ -1.7
SMARCA4-216ENST00000591545 LCE3DQ9BYE3 92 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms