RNA–Protein interactions for RNA: ENST00000591545.5

SMARCA4-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 5,193 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-216ENST00000591545 DCAF8L2P0C7V8 631 aa23.71■■□□□ 1.39
SMARCA4-216ENST00000591545 NISCHQ9Y2I1 1504 aa23.14■■□□□ 1.3
SMARCA4-216ENST00000591545 SUPT5HO00267 1087 aaKnown RBP21.94■■□□□ 1.1
SMARCA4-216ENST00000591545 SHROOM4Q9ULL8 1493 aa21.7■■□□□ 1.06
SMARCA4-216ENST00000591545 FAM9AQ8IZU1 332 aaPredicted RBP21.17■□□□□ 0.98
SMARCA4-216ENST00000591545 PELP1Q8IZL8 1130 aaKnown RBP21.1■□□□□ 0.97
SMARCA4-216ENST00000591545 EHMT2Q96KQ7 1210 aa21.1■□□□□ 0.97
SMARCA4-216ENST00000591545 APLP2Q06481 763 aa21.01■□□□□ 0.95
SMARCA4-216ENST00000591545 TRIM41Q8WV44 630 aa20.45■□□□□ 0.86
SMARCA4-216ENST00000591545 RANGAP1P46060 587 aaPredicted RBP20.44■□□□□ 0.86
SMARCA4-216ENST00000591545 ATP1B4Q9UN42 357 aaPredicted RBP20.41■□□□□ 0.86
SMARCA4-216ENST00000591545 TTBK1Q5TCY1 1321 aaPredicted RBP20.3■□□□□ 0.84
SMARCA4-216ENST00000591545 ZEB1P37275 1124 aaPredicted RBP20.28■□□□□ 0.84
SMARCA4-216ENST00000591545 UBTFP17480 764 aaKnown RBP20.26■□□□□ 0.83
SMARCA4-216ENST00000591545 CENPBP07199 599 aaPredicted RBP20.24■□□□□ 0.83
SMARCA4-216ENST00000591545 PCGF6Q9BYE7 350 aa20.18■□□□□ 0.82
SMARCA4-216ENST00000591545 MYT1Q01538 1121 aa20.13■□□□□ 0.81
SMARCA4-216ENST00000591545 CCER1Q8TC90 406 aaPredicted RBP20.12■□□□□ 0.81
SMARCA4-216ENST00000591545 ABCC9O60706 1549 aa20.09■□□□□ 0.81
SMARCA4-216ENST00000591545 ERICH6Q7L0X2 663 aa20.05■□□□□ 0.8
SMARCA4-216ENST00000591545 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.89■□□□□ 0.78
SMARCA4-216ENST00000591545 HNRNPUL2Q1KMD3 747 aaKnown RBP19.89■□□□□ 0.78
SMARCA4-216ENST00000591545 PABPN1Q86U42 306 aaKnown RBP eCLIP19.89■□□□□ 0.77
SMARCA4-216ENST00000591545 MYT1LQ9UL68 1186 aa19.89■□□□□ 0.77
SMARCA4-216ENST00000591545 NEFLP07196 543 aa19.75■□□□□ 0.75
SMARCA4-216ENST00000591545 TRIM26Q12899 539 aaPredicted RBP19.47■□□□□ 0.71
SMARCA4-216ENST00000591545 ITGAEP38570 1179 aa19.46■□□□□ 0.71
SMARCA4-216ENST00000591545 PPARGC1BQ86YN6 1023 aaKnown RBP19.45■□□□□ 0.7
SMARCA4-216ENST00000591545 CHIC1Q5VXU3 224 aa19.44■□□□□ 0.7
SMARCA4-216ENST00000591545 YTHDC1Q96MU7 727 aaKnown RBP19.42■□□□□ 0.7
SMARCA4-216ENST00000591545 FBLN2P98095 1184 aa19.37■□□□□ 0.69
SMARCA4-216ENST00000591545 HRCP23327 699 aa19.35■□□□□ 0.69
SMARCA4-216ENST00000591545 ZCCHC6Q5VYS8 1495 aaKnown RBP19.34■□□□□ 0.69
SMARCA4-216ENST00000591545 CCDC180Q9P1Z9 1646 aa19.28■□□□□ 0.68
SMARCA4-216ENST00000591545 POLR3GLQ9BT43 218 aa19.21■□□□□ 0.67
SMARCA4-216ENST00000591545 LOC105371045A0A1W2PR82 267 aa19.2■□□□□ 0.66
SMARCA4-216ENST00000591545 DAXXQ9UER7 740 aaPredicted RBP19.16■□□□□ 0.66
SMARCA4-216ENST00000591545 FAM50AQ14320 339 aaKnown RBP19.09■□□□□ 0.65
SMARCA4-216ENST00000591545 SLC4A1APQ9BWU0 796 aaKnown RBP19.06■□□□□ 0.64
SMARCA4-216ENST00000591545 SCRIBQ14160 1630 aa19.04■□□□□ 0.64
SMARCA4-216ENST00000591545 TRIM52Q96A61 297 aa19.01■□□□□ 0.63
SMARCA4-216ENST00000591545 NPM1P06748 294 aaKnown RBP eCLIP18.89■□□□□ 0.62
SMARCA4-216ENST00000591545 CNGB1Q14028 1251 aaPredicted RBP18.87■□□□□ 0.61
SMARCA4-216ENST00000591545 CDK11AQ9UQ88 783 aaPredicted RBP18.87■□□□□ 0.61
SMARCA4-216ENST00000591545 P3H3Q8IVL6 736 aa18.83■□□□□ 0.61
SMARCA4-216ENST00000591545 ARID3CA6NKF2 412 aa18.81■□□□□ 0.6
SMARCA4-216ENST00000591545 DIEXFQ68CQ4 756 aaKnown RBP18.81■□□□□ 0.6
SMARCA4-216ENST00000591545 ESF1Q9H501 851 aaKnown RBP18.81■□□□□ 0.6
SMARCA4-216ENST00000591545 RTL5Q5HYW3 569 aaPredicted RBP18.81■□□□□ 0.6
SMARCA4-216ENST00000591545 CSRNP3Q8WYN3 585 aa18.81■□□□□ 0.6
SMARCA4-216ENST00000591545 BCANQ96GW7 911 aa18.78■□□□□ 0.6
SMARCA4-216ENST00000591545 RB1CC1Q8TDY2 1594 aa18.78■□□□□ 0.6
SMARCA4-216ENST00000591545 ZNF777Q9ULD5 760 aaPredicted RBP18.72■□□□□ 0.59
SMARCA4-216ENST00000591545 ZNF316A6NFI3 1004 aaPredicted RBP18.7■□□□□ 0.58
SMARCA4-216ENST00000591545 ZNF326Q5BKZ1 582 aaKnown RBP18.69■□□□□ 0.58
SMARCA4-216ENST00000591545 NEUROD1Q13562 356 aa18.67■□□□□ 0.58
SMARCA4-216ENST00000591545 CHMP7Q8WUX9 453 aaPredicted RBP18.62■□□□□ 0.57
SMARCA4-216ENST00000591545 CLSPNQ9HAW4 1339 aa18.61■□□□□ 0.57
SMARCA4-216ENST00000591545 STAG3Q9UJ98 1225 aa18.55■□□□□ 0.56
SMARCA4-216ENST00000591545 DCAF1Q9Y4B6 1507 aa18.52■□□□□ 0.56
SMARCA4-216ENST00000591545 MYO15BQ96JP2 1530 aa18.51■□□□□ 0.55
SMARCA4-216ENST00000591545 NACADO15069 1562 aa18.51■□□□□ 0.55
SMARCA4-216ENST00000591545 PLPPR3Q6T4P5 718 aa18.5■□□□□ 0.55
SMARCA4-216ENST00000591545 ANP32CO43423 234 aa18.47■□□□□ 0.55
SMARCA4-216ENST00000591545 NEFMP07197 916 aa18.46■□□□□ 0.55
SMARCA4-216ENST00000591545 CHGAP10645 457 aaKnown RBP18.45■□□□□ 0.54
SMARCA4-216ENST00000591545 GTF3C3Q9Y5Q9 886 aa18.45■□□□□ 0.54
SMARCA4-216ENST00000591545 RSF1Q96T23 1441 aaPredicted RBP18.44■□□□□ 0.54
SMARCA4-216ENST00000591545 SLC24A1O60721 1099 aa18.39■□□□□ 0.54
SMARCA4-216ENST00000591545 ERCC6Q03468 1493 aa18.36■□□□□ 0.53
SMARCA4-216ENST00000591545 TSPY4P0CV99 314 aa18.35■□□□□ 0.53
SMARCA4-216ENST00000591545 TSPY10P0CW01 314 aa18.35■□□□□ 0.53
SMARCA4-216ENST00000591545 BAZ1BQ9UIG0 1483 aaKnown RBP18.34■□□□□ 0.53
SMARCA4-216ENST00000591545 ZBTB47Q9UFB7 747 aaPredicted RBP18.31■□□□□ 0.52
SMARCA4-216ENST00000591545 ACIN1Q9UKV3 1341 aaKnown RBP18.27■□□□□ 0.52
SMARCA4-216ENST00000591545 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.27■□□□□ 0.523e-8■■■□□ 19.1
SMARCA4-216ENST00000591545 MTUS2Q5JR59 1369 aa18.25■□□□□ 0.51
SMARCA4-216ENST00000591545 KCNH8Q96L42 1107 aa18.23■□□□□ 0.51
SMARCA4-216ENST00000591545 PLEKHD1A6NEE1 506 aa18.23■□□□□ 0.51
SMARCA4-216ENST00000591545 CHIC2Q9UKJ5 165 aa18.19■□□□□ 0.5
SMARCA4-216ENST00000591545 ANP32AP39687 249 aaKnown RBP18.18■□□□□ 0.5
SMARCA4-216ENST00000591545 TONSLQ96HA7 1378 aa18.16■□□□□ 0.5
SMARCA4-216ENST00000591545 CANXP27824 592 aaKnown RBP18.16■□□□□ 0.5
SMARCA4-216ENST00000591545 CECR2Q9BXF3 1484 aa18.16■□□□□ 0.5
SMARCA4-216ENST00000591545 ARID4BQ4LE39 1312 aaPredicted RBP18.12■□□□□ 0.49
SMARCA4-216ENST00000591545 WRNQ14191 1432 aaPredicted RBP eCLIP18.09■□□□□ 0.495e-6■■□□□ 12.5
SMARCA4-216ENST00000591545 KIF27Q86VH2 1401 aa18.08■□□□□ 0.48
SMARCA4-216ENST00000591545 PPP1R15AO75807 674 aaPredicted RBP18.07■□□□□ 0.48
SMARCA4-216ENST00000591545 EEA1Q15075 1411 aa18.07■□□□□ 0.48
SMARCA4-216ENST00000591545 BAZ1AQ9NRL2 1556 aaPredicted RBP18.06■□□□□ 0.48
SMARCA4-216ENST00000591545 CLIP1P30622 1438 aa18.05■□□□□ 0.48
SMARCA4-216ENST00000591545 TRHP20396 242 aaPredicted RBP18.02■□□□□ 0.48
SMARCA4-216ENST00000591545 SCAF1Q9H7N4 1312 aaKnown RBP18.02■□□□□ 0.47
SMARCA4-216ENST00000591545 C14orf37Q86TY3 774 aa18■□□□□ 0.47
SMARCA4-216ENST00000591545 MROH2BQ7Z745 1585 aa17.99■□□□□ 0.47
SMARCA4-216ENST00000591545 BCL11AQ9H165 835 aa17.98■□□□□ 0.47
SMARCA4-216ENST00000591545 CFDP1Q9UEE9 299 aaPredicted RBP17.97■□□□□ 0.47
SMARCA4-216ENST00000591545 KDM2AQ9Y2K7 1162 aa17.96■□□□□ 0.47
SMARCA4-216ENST00000591545 GOLGA3Q08378 1498 aa17.95■□□□□ 0.46
SMARCA4-216ENST00000591545 ANP32BQ92688 251 aaKnown RBP17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 192.6 ms