RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 CLASP1Q7Z460 1538 aa-1.85□□□□□ -2.71
SMCHD1-204ENST00000581226 FCER1GP30273 86 aa-1.85□□□□□ -2.71
SMCHD1-204ENST00000581226 CLPSL2Q6UWE3 100 aa-1.86□□□□□ -2.71
SMCHD1-204ENST00000581226 MAST1Q9Y2H9 1570 aa-1.86□□□□□ -2.71
SMCHD1-204ENST00000581226 TRRAPQ9Y4A5 3859 aa-1.86□□□□□ -2.71
SMCHD1-204ENST00000581226 UGGT2Q9NYU1 1516 aa-1.86□□□□□ -2.71
SMCHD1-204ENST00000581226 COL6A5A8TX70 2615 aa-1.87□□□□□ -2.71
SMCHD1-204ENST00000581226 MT1XP80297 61 aa-1.87□□□□□ -2.71
SMCHD1-204ENST00000581226 ATXN8Q156A1 80 aa-1.87□□□□□ -2.71
SMCHD1-204ENST00000581226 EYSQ5T1H1 3165 aa-1.88□□□□□ -2.71
SMCHD1-204ENST00000581226 H3BUA1 57 aa-1.89□□□□□ -2.71
SMCHD1-204ENST00000581226 CROCC2H7BZ55 1655 aa-1.9□□□□□ -2.71
SMCHD1-204ENST00000581226 MADDQ8WXG6 1647 aa-1.91□□□□□ -2.72
SMCHD1-204ENST00000581226 DNAH5Q8TE73 4624 aa-1.93□□□□□ -2.72
SMCHD1-204ENST00000581226 A0A1B0GUL6 1792 aa-1.94□□□□□ -2.72
SMCHD1-204ENST00000581226 NOP10Q9NPE3 64 aaKnown RBP-1.94□□□□□ -2.72
SMCHD1-204ENST00000581226 CFAP46Q8IYW2 2715 aa-1.95□□□□□ -2.72
SMCHD1-204ENST00000581226 TIAM1Q13009 1591 aa-1.96□□□□□ -2.72
SMCHD1-204ENST00000581226 MT1EP04732 61 aa-1.96□□□□□ -2.72
SMCHD1-204ENST00000581226 DUOX2Q9NRD8 1548 aa-1.96□□□□□ -2.72
SMCHD1-204ENST00000581226 GLI2P10070 1586 aa-2.02□□□□□ -2.73
SMCHD1-204ENST00000581226 SMG1Q96Q15 3661 aaKnown RBP-2.02□□□□□ -2.73
SMCHD1-204ENST00000581226 GNG13Q9P2W3 67 aa-2.02□□□□□ -2.73
SMCHD1-204ENST00000581226 LINC01549A6NIU2 74 aa-2.04□□□□□ -2.74
SMCHD1-204ENST00000581226 MT1LQ93083 61 aa-2.04□□□□□ -2.74
SMCHD1-204ENST00000581226 SMCO4Q9NRQ5 59 aa-2.05□□□□□ -2.74
SMCHD1-204ENST00000581226 FAM208AQ9UK61 1670 aaKnown RBP-2.06□□□□□ -2.74
SMCHD1-204ENST00000581226 M0QY20 66 aa-2.06□□□□□ -2.74
SMCHD1-204ENST00000581226 ALS2Q96Q42 1657 aa-2.06□□□□□ -2.74
SMCHD1-204ENST00000581226 SCRIBQ14160 1630 aa-2.07□□□□□ -2.74
SMCHD1-204ENST00000581226 M0QZ58 72 aa-2.08□□□□□ -2.74
SMCHD1-204ENST00000581226 ABCA6Q8N139 1617 aa-2.09□□□□□ -2.74
SMCHD1-204ENST00000581226 K7EMI3 77 aa-2.09□□□□□ -2.74
SMCHD1-204ENST00000581226 PDCD5O14737 125 aa-2.09□□□□□ -2.74
SMCHD1-204ENST00000581226 M0R1W7 72 aa-2.11□□□□□ -2.75
SMCHD1-204ENST00000581226 ZFHX4Q86UP3 3567 aa-2.13□□□□□ -2.75
SMCHD1-204ENST00000581226 ITPR2Q14571 2701 aa-2.13□□□□□ -2.75
SMCHD1-204ENST00000581226 CSMD2Q7Z408 3487 aa-2.14□□□□□ -2.75
SMCHD1-204ENST00000581226 A8MTW9 85 aa-2.15□□□□□ -2.75
SMCHD1-204ENST00000581226 KAAG1Q9UBP8 84 aa-2.15□□□□□ -2.75
SMCHD1-204ENST00000581226 ABCA13Q86UQ4 5058 aa-2.16□□□□□ -2.75
SMCHD1-204ENST00000581226 DMXL2Q8TDJ6 3036 aa-2.16□□□□□ -2.76
SMCHD1-204ENST00000581226 LINC00308Q8TCZ7 52 aa-2.18□□□□□ -2.76
SMCHD1-204ENST00000581226 EEA1Q15075 1411 aa-2.18□□□□□ -2.76
SMCHD1-204ENST00000581226 EFCAB5A4FU69 1503 aa-2.19□□□□□ -2.76
SMCHD1-204ENST00000581226 IGIPA6NJ69 53 aa-2.2□□□□□ -2.76
SMCHD1-204ENST00000581226 MT1HL1P0DM35 61 aa-2.2□□□□□ -2.76
SMCHD1-204ENST00000581226 MT1GP13640 62 aa-2.2□□□□□ -2.76
SMCHD1-204ENST00000581226 PREX2Q70Z35 1606 aa-2.2□□□□□ -2.76
SMCHD1-204ENST00000581226 CCDC180Q9P1Z9 1646 aa-2.2□□□□□ -2.76
SMCHD1-204ENST00000581226 KIF21BO75037 1637 aa-2.23□□□□□ -2.77
SMCHD1-204ENST00000581226 LINC01546A6NGU7 62 aa-2.23□□□□□ -2.77
SMCHD1-204ENST00000581226 CRYBG3Q68DQ2 2970 aa-2.23□□□□□ -2.77
SMCHD1-204ENST00000581226 ATMQ13315 3056 aa-2.23□□□□□ -2.77
SMCHD1-204ENST00000581226 TMEM167BQ9NRX6 74 aa-2.24□□□□□ -2.77
SMCHD1-204ENST00000581226 ABRACLQ9P1F3 81 aa-2.24□□□□□ -2.77
SMCHD1-204ENST00000581226 EFCAB6Q5THR3 1501 aa-2.26□□□□□ -2.77
SMCHD1-204ENST00000581226 CFAP54Q96N23 3096 aa-2.27□□□□□ -2.77
SMCHD1-204ENST00000581226 SMIM27A0A1W2PRY6 76 aa-2.28□□□□□ -2.77
SMCHD1-204ENST00000581226 NMES1Q9C002 83 aa-2.28□□□□□ -2.77
SMCHD1-204ENST00000581226 TLN1Q9Y490 2541 aaKnown RBP-2.28□□□□□ -2.77
SMCHD1-204ENST00000581226 LMO7Q8WWI1 1683 aa-2.3□□□□□ -2.78
SMCHD1-204ENST00000581226 SPART-AS1P0CW21 52 aa-2.3□□□□□ -2.78
SMCHD1-204ENST00000581226 SERF2P84101 59 aa-2.3□□□□□ -2.78
SMCHD1-204ENST00000581226 WFDC10BQ8IUB3 73 aa-2.3□□□□□ -2.78
SMCHD1-204ENST00000581226 PRUNE2Q8WUY3 3088 aa-2.3□□□□□ -2.78
SMCHD1-204ENST00000581226 UGGT1Q9NYU2 1555 aa-2.31□□□□□ -2.78
SMCHD1-204ENST00000581226 MT1MQ8N339 61 aa-2.33□□□□□ -2.78
SMCHD1-204ENST00000581226 A0A087WWC5 75 aa-2.36□□□□□ -2.79
SMCHD1-204ENST00000581226 MT2AP02795 61 aa-2.36□□□□□ -2.79
SMCHD1-204ENST00000581226 ABCA10Q8WWZ4 1543 aa-2.37□□□□□ -2.79
SMCHD1-204ENST00000581226 VPS13CQ709C8 3753 aa-2.39□□□□□ -2.79
SMCHD1-204ENST00000581226 MYO15AQ9UKN7 3530 aa-2.4□□□□□ -2.79
SMCHD1-204ENST00000581226 AGLP35573 1532 aa-2.41□□□□□ -2.79
SMCHD1-204ENST00000581226 FREM2Q5SZK8 3169 aa-2.42□□□□□ -2.8
SMCHD1-204ENST00000581226 CPS1P31327 1500 aa-2.43□□□□□ -2.8
SMCHD1-204ENST00000581226 H0YGX0 51 aa-2.44□□□□□ -2.8
SMCHD1-204ENST00000581226 SYCP2Q9BX26 1530 aa-2.45□□□□□ -2.8
SMCHD1-204ENST00000581226 DEFB4AO15263 64 aa-2.46□□□□□ -2.8
SMCHD1-204ENST00000581226 POLR2KP53803 58 aaKnown RBP-2.49□□□□□ -2.81
SMCHD1-204ENST00000581226 FRYLO94915 3013 aa-2.5□□□□□ -2.81
SMCHD1-204ENST00000581226 LEAP2Q969E1 77 aa-2.51□□□□□ -2.81
SMCHD1-204ENST00000581226 DEFB131AP59861 70 aa-2.52□□□□□ -2.81
SMCHD1-204ENST00000581226 TFF3Q07654 80 aa-2.53□□□□□ -2.81
SMCHD1-204ENST00000581226 MROH2AA6NES4 1674 aa-2.53□□□□□ -2.82
SMCHD1-204ENST00000581226 PRXQ9BXM0 1461 aa-2.54□□□□□ -2.82
SMCHD1-204ENST00000581226 MT1BP07438 61 aa-2.56□□□□□ -2.82
SMCHD1-204ENST00000581226 DDX60Q8IY21 1712 aaKnown RBP-2.57□□□□□ -2.82
SMCHD1-204ENST00000581226 IQGAP1P46940 1657 aa-2.57□□□□□ -2.82
SMCHD1-204ENST00000581226 ABCA5Q8WWZ7 1642 aa-2.57□□□□□ -2.82
SMCHD1-204ENST00000581226 BOD1L1Q8NFC6 3051 aa-2.57□□□□□ -2.82
SMCHD1-204ENST00000581226 S100ZQ8WXG8 99 aa-2.58□□□□□ -2.82
SMCHD1-204ENST00000581226 NRXN3Q9Y4C0 1643 aa-2.58□□□□□ -2.82
SMCHD1-204ENST00000581226 WDFY3Q8IZQ1 3526 aa-2.61□□□□□ -2.83
SMCHD1-204ENST00000581226 PLNP26678 52 aa-2.64□□□□□ -2.83
SMCHD1-204ENST00000581226 KRTAP20-1Q3LI63 56 aa-2.64□□□□□ -2.83
SMCHD1-204ENST00000581226 SMIM5Q71RC9 77 aa-2.64□□□□□ -2.83
SMCHD1-204ENST00000581226 DEFB136Q30KP8 78 aa-2.65□□□□□ -2.83
SMCHD1-204ENST00000581226 PCNTO95613 3336 aa-2.66□□□□□ -2.83
SMCHD1-204ENST00000581226 NFAT5O94916 1531 aa-2.68□□□□□ -2.84
Retrieved 100 of 20,778 RNA–protein pairs in 120.2 ms