RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 TPRXLQ17RH7 258 aa5.87□□□□□ -1.47
CDH1-210ENST00000566612 HECTD4Q9Y4D8 3996 aa5.82□□□□□ -1.48
CDH1-210ENST00000566612 C10orf95Q9H7T3 257 aa5.82□□□□□ -1.48
CDH1-210ENST00000566612 DYNC1H1Q14204 4646 aaKnown RBP5.81□□□□□ -1.48
CDH1-210ENST00000566612 DYNC2H1Q8NCM8 4307 aaKnown RBP5.79□□□□□ -1.48
CDH1-210ENST00000566612 ALMS1Q8TCU4 4167 aa5.77□□□□□ -1.49
CDH1-210ENST00000566612 VPS13BQ7Z7G8 4022 aa5.77□□□□□ -1.49
CDH1-210ENST00000566612 H3BS24 57 aa5.76□□□□□ -1.49
CDH1-210ENST00000566612 MT1HL1P0DM35 61 aa5.75□□□□□ -1.49
CDH1-210ENST00000566612 HYDINQ4G0P3 5121 aa5.75□□□□□ -1.49
CDH1-210ENST00000566612 KRTAP13-4Q3LI77 160 aa5.71□□□□□ -1.5
CDH1-210ENST00000566612 KRTAP10-6P60371 365 aaPredicted RBP5.71□□□□□ -1.5
CDH1-210ENST00000566612 KRTAP12-2P59991 146 aa5.67□□□□□ -1.5
CDH1-210ENST00000566612 MYCBP2O75592 4640 aa5.67□□□□□ -1.5
CDH1-210ENST00000566612 KRTAP4-5Q9BYR2 181 aa5.67□□□□□ -1.5
CDH1-210ENST00000566612 KRTAP3-3Q9BYR6 98 aa5.67□□□□□ -1.5
CDH1-210ENST00000566612 PKHD1P08F94 4074 aa5.65□□□□□ -1.5
CDH1-210ENST00000566612 LUZP6Q538Z0 58 aa5.65□□□□□ -1.5
CDH1-210ENST00000566612 KIAA1109Q2LD37 5005 aa5.6□□□□□ -1.51
CDH1-210ENST00000566612 PLAC4Q8WY50 150 aa5.6□□□□□ -1.51
CDH1-210ENST00000566612 KRTAP3-2Q9BYR7 98 aa5.6□□□□□ -1.51
CDH1-210ENST00000566612 SACSQ9NZJ4 4579 aa5.59□□□□□ -1.51
CDH1-210ENST00000566612 KRTAP12-1P59990 96 aa5.59□□□□□ -1.51
CDH1-210ENST00000566612 LRP1Q07954 4544 aaKnown RBP5.59□□□□□ -1.52
CDH1-210ENST00000566612 FAT2Q9NYQ8 4349 aa5.58□□□□□ -1.52
CDH1-210ENST00000566612 APOBP04114 4563 aaKnown RBP5.58□□□□□ -1.52
CDH1-210ENST00000566612 RYR1P21817 5038 aa5.56□□□□□ -1.52
CDH1-210ENST00000566612 NDUFAF8A1L188 74 aa5.56□□□□□ -1.52
CDH1-210ENST00000566612 FAT3Q8TDW7 4589 aa5.52□□□□□ -1.53
CDH1-210ENST00000566612 RYR3Q15413 4870 aa5.5□□□□□ -1.53
CDH1-210ENST00000566612 TNP1P09430 55 aa5.47□□□□□ -1.53
CDH1-210ENST00000566612 KRTAP17-1Q9BYP8 105 aa5.44□□□□□ -1.54
CDH1-210ENST00000566612 PKD1P98161 4303 aa5.44□□□□□ -1.54
CDH1-210ENST00000566612 KMT2CQ8NEZ4 4911 aaKnown RBP5.43□□□□□ -1.54
CDH1-210ENST00000566612 RYR2Q92736 4967 aa5.42□□□□□ -1.54
CDH1-210ENST00000566612 KRTAP10-10P60014 251 aa5.4□□□□□ -1.54
CDH1-210ENST00000566612 PP632Q6XCG6 107 aa5.33□□□□□ -1.56
CDH1-210ENST00000566612 LORP23490 312 aaPredicted RBP5.33□□□□□ -1.56
CDH1-210ENST00000566612 LRP2P98164 4655 aa5.29□□□□□ -1.56
CDH1-210ENST00000566612 KRTAP4-1Q9BYQ7 146 aa5.29□□□□□ -1.56
CDH1-210ENST00000566612 A0A0A0MQY5 61 aa5.27□□□□□ -1.57
CDH1-210ENST00000566612 HSPG2P98160 4391 aa5.25□□□□□ -1.57
CDH1-210ENST00000566612 LPAP08519 4548 aa5.16□□□□□ -1.58
CDH1-210ENST00000566612 HERC2O95714 4834 aa5.15□□□□□ -1.58
CDH1-210ENST00000566612 PKHD1L1Q86WI1 4243 aa5.14□□□□□ -1.59
CDH1-210ENST00000566612 EPPK1P58107 5090 aaKnown RBP5.1□□□□□ -1.59
CDH1-210ENST00000566612 KRTAP15-1Q3LI76 137 aa5.09□□□□□ -1.59
CDH1-210ENST00000566612 TNXBP22105 4242 aa5.06□□□□□ -1.6
CDH1-210ENST00000566612 PRO2289Q9P1D8 64 aa5□□□□□ -1.61
CDH1-210ENST00000566612 ABCA13Q86UQ4 5058 aa5□□□□□ -1.61
CDH1-210ENST00000566612 MUC2Q02817 5179 aa4.96□□□□□ -1.62
CDH1-210ENST00000566612 MT1HP80294 61 aa4.87□□□□□ -1.63
CDH1-210ENST00000566612 BIRC6Q9NR09 4857 aa4.85□□□□□ -1.63
CDH1-210ENST00000566612 LCE3AQ5TA76 89 aa4.84□□□□□ -1.63
CDH1-210ENST00000566612 MT2AP02795 61 aa4.82□□□□□ -1.64
CDH1-210ENST00000566612 KRTAP10-12P60413 245 aa4.8□□□□□ -1.64
CDH1-210ENST00000566612 MT1FP04733 61 aa4.79□□□□□ -1.64
CDH1-210ENST00000566612 SPRR2GQ9BYE4 73 aa4.78□□□□□ -1.64
CDH1-210ENST00000566612 HERC1Q15751 4861 aa4.76□□□□□ -1.65
CDH1-210ENST00000566612 PCLOQ9Y6V0 5065 aa4.74□□□□□ -1.65
CDH1-210ENST00000566612 FAT4Q6V0I7 4981 aa4.73□□□□□ -1.65
CDH1-210ENST00000566612 KRTAP19-2Q3LHN2 52 aa4.73□□□□□ -1.65
CDH1-210ENST00000566612 KRTAP23-1A1A580 65 aa4.73□□□□□ -1.65
CDH1-210ENST00000566612 KRTAP12-3P60328 96 aa4.72□□□□□ -1.65
CDH1-210ENST00000566612 KRTAP19-1Q8IUB9 90 aa4.72□□□□□ -1.65
CDH1-210ENST00000566612 RNF213Q63HN8 5207 aa4.72□□□□□ -1.65
CDH1-210ENST00000566612 LCE2CQ5TA81 110 aa4.7□□□□□ -1.66
CDH1-210ENST00000566612 MUC17Q685J3 4493 aa4.69□□□□□ -1.66
CDH1-210ENST00000566612 FLGP20930 4061 aaPredicted RBP4.64□□□□□ -1.67
CDH1-210ENST00000566612 UBR4Q5T4S7 5183 aa4.58□□□□□ -1.68
CDH1-210ENST00000566612 KRTAP9-8Q9BYQ0 159 aa4.58□□□□□ -1.68
CDH1-210ENST00000566612 HMCN2Q8NDA2 5059 aa4.52□□□□□ -1.69
CDH1-210ENST00000566612 KRTAP19-8Q3LI54 63 aa4.51□□□□□ -1.69
CDH1-210ENST00000566612 MT1BP07438 61 aa4.49□□□□□ -1.69
CDH1-210ENST00000566612 KRTAP10-7P60409 375 aaPredicted RBP4.48□□□□□ -1.69
CDH1-210ENST00000566612 KRTAP8-1Q8IUC2 63 aa4.48□□□□□ -1.69
CDH1-210ENST00000566612 MT1XP80297 61 aa4.47□□□□□ -1.69
CDH1-210ENST00000566612 KRTAP10-5P60370 271 aa4.45□□□□□ -1.7
CDH1-210ENST00000566612 KRTAP19-5Q3LI72 72 aa4.41□□□□□ -1.7
CDH1-210ENST00000566612 CRCT1Q9UGL9 99 aa4.41□□□□□ -1.7
CDH1-210ENST00000566612 KRTAP9-3Q9BYQ3 159 aa4.4□□□□□ -1.71
CDH1-210ENST00000566612 FSIP2Q5CZC0 6907 aa4.37□□□□□ -1.71
CDH1-210ENST00000566612 KRTAP4-8A0A0G2JLE6 195 aa4.3□□□□□ -1.72
CDH1-210ENST00000566612 KRTAP4-8Q9BYQ9 185 aa4.3□□□□□ -1.72
CDH1-210ENST00000566612 INE1O15225 51 aa4.3□□□□□ -1.72
CDH1-210ENST00000566612 LCE2BO14633 110 aa4.28□□□□□ -1.72
CDH1-210ENST00000566612 SPRR5A0A1B0GTR4 108 aa4.27□□□□□ -1.73
CDH1-210ENST00000566612 LCE3CQ5T5A8 94 aa4.27□□□□□ -1.73
CDH1-210ENST00000566612 USH2AO75445 5202 aa4.24□□□□□ -1.73
CDH1-210ENST00000566612 KMT2DO14686 5537 aa4.15□□□□□ -1.74
CDH1-210ENST00000566612 KRTAP4-7Q9BYR0 210 aa4.09□□□□□ -1.75
CDH1-210ENST00000566612 SPRR2FQ96RM1 72 aa4.07□□□□□ -1.76
CDH1-210ENST00000566612 LCE2AQ5TA79 106 aaPredicted RBP4.05□□□□□ -1.76
CDH1-210ENST00000566612 MT1GP13640 62 aa3.96□□□□□ -1.78
CDH1-210ENST00000566612 DSTQ03001 7570 aaKnown RBP3.94□□□□□ -1.78
CDH1-210ENST00000566612 OBSCNQ5VST9 7968 aa3.94□□□□□ -1.78
CDH1-210ENST00000566612 MT1LQ93083 61 aa3.93□□□□□ -1.78
CDH1-210ENST00000566612 MT1EP04732 61 aa3.92□□□□□ -1.78
CDH1-210ENST00000566612 KRTAP19-7Q3SYF9 63 aa3.91□□□□□ -1.78
CDH1-210ENST00000566612 KRTAP19-4Q3LI73 84 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms