RNA–Protein interactions for RNA: ENST00000562836.5

CDH1-205, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 2,759 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-205ENST00000562836 VPS13DQ5THJ4 4388 aa4.42□□□□□ -1.7
CDH1-205ENST00000562836 LORP23490 312 aaPredicted RBP4.41□□□□□ -1.7
CDH1-205ENST00000562836 PP632Q6XCG6 107 aa4.4□□□□□ -1.71
CDH1-205ENST00000562836 DNAH8Q96JB1 4490 aa4.4□□□□□ -1.71
CDH1-205ENST00000562836 SPRR5A0A1B0GTR4 108 aa4.39□□□□□ -1.71
CDH1-205ENST00000562836 FBN3Q75N90 2809 aa4.37□□□□□ -1.71
CDH1-205ENST00000562836 KRTAP13-2Q52LG2 175 aa4.35□□□□□ -1.71
CDH1-205ENST00000562836 DNAH2Q9P225 4427 aa4.34□□□□□ -1.71
CDH1-205ENST00000562836 HECTD4Q9Y4D8 3996 aa4.34□□□□□ -1.72
CDH1-205ENST00000562836 HYDINQ4G0P3 5121 aa4.32□□□□□ -1.72
CDH1-205ENST00000562836 DNAH17Q9UFH2 4485 aa4.3□□□□□ -1.72
CDH1-205ENST00000562836 DNAH11Q96DT5 4516 aa4.29□□□□□ -1.72
CDH1-205ENST00000562836 DNAH6Q9C0G6 4158 aa4.28□□□□□ -1.73
CDH1-205ENST00000562836 KRTAP1-4P0C5Y4 121 aa4.27□□□□□ -1.73
CDH1-205ENST00000562836 RPS29P62273 56 aaKnown RBP4.23□□□□□ -1.73
CDH1-205ENST00000562836 KRTAP10-2P60368 255 aa4.22□□□□□ -1.73
CDH1-205ENST00000562836 DNAH5Q8TE73 4624 aa4.21□□□□□ -1.74
CDH1-205ENST00000562836 MYCBP2O75592 4640 aa4.19□□□□□ -1.74
CDH1-205ENST00000562836 M0QZ58 72 aa4.18□□□□□ -1.74
CDH1-205ENST00000562836 KRTAP10-1P60331 282 aa4.18□□□□□ -1.74
CDH1-205ENST00000562836 FAT2Q9NYQ8 4349 aa4.17□□□□□ -1.74
CDH1-205ENST00000562836 PKD1P98161 4303 aa4.16□□□□□ -1.74
CDH1-205ENST00000562836 PKHD1P08F94 4074 aa4.16□□□□□ -1.74
CDH1-205ENST00000562836 LRP1BQ9NZR2 4599 aa4.16□□□□□ -1.74
CDH1-205ENST00000562836 SACSQ9NZJ4 4579 aa4.14□□□□□ -1.75
CDH1-205ENST00000562836 KRTAP21-3Q3LHN1 58 aa4.13□□□□□ -1.75
CDH1-205ENST00000562836 C9orf92A6NGG3 77 aa4.12□□□□□ -1.75
CDH1-205ENST00000562836 A0A1B0GVY2 172 aa4.11□□□□□ -1.75
CDH1-205ENST00000562836 KMT2CQ8NEZ4 4911 aaKnown RBP4.1□□□□□ -1.75
CDH1-205ENST00000562836 VPS13BQ7Z7G8 4022 aa4.1□□□□□ -1.75
CDH1-205ENST00000562836 Q5VSD8 79 aa4.05□□□□□ -1.76
CDH1-205ENST00000562836 RYR2Q92736 4967 aa4.04□□□□□ -1.76
CDH1-205ENST00000562836 DYNC1H1Q14204 4646 aaKnown RBP4.02□□□□□ -1.77
CDH1-205ENST00000562836 FAT1Q14517 4588 aa4.02□□□□□ -1.77
CDH1-205ENST00000562836 SMR3BP02814 79 aaPredicted RBP3.99□□□□□ -1.77
CDH1-205ENST00000562836 RYR3Q15413 4870 aa3.99□□□□□ -1.77
CDH1-205ENST00000562836 APOBP04114 4563 aaKnown RBP3.97□□□□□ -1.77
CDH1-205ENST00000562836 PKHD1L1Q86WI1 4243 aa3.95□□□□□ -1.78
CDH1-205ENST00000562836 KRTAP10-4P60372 401 aaPredicted RBP3.94□□□□□ -1.78
CDH1-205ENST00000562836 KRTAP10-10P60014 251 aa3.91□□□□□ -1.78
CDH1-205ENST00000562836 LRP1Q07954 4544 aaKnown RBP3.88□□□□□ -1.79
CDH1-205ENST00000562836 EPPK1P58107 5090 aaKnown RBP3.86□□□□□ -1.79
CDH1-205ENST00000562836 KIAA1109Q2LD37 5005 aa3.86□□□□□ -1.79
CDH1-205ENST00000562836 HSPG2P98160 4391 aa3.86□□□□□ -1.79
CDH1-205ENST00000562836 RYR1P21817 5038 aa3.82□□□□□ -1.8
CDH1-205ENST00000562836 TNP1P09430 55 aa3.82□□□□□ -1.8
CDH1-205ENST00000562836 KRTAP17-1Q9BYP8 105 aa3.81□□□□□ -1.8
CDH1-205ENST00000562836 TNXBP22105 4242 aa3.79□□□□□ -1.8
CDH1-205ENST00000562836 FAT3Q8TDW7 4589 aa3.79□□□□□ -1.8
CDH1-205ENST00000562836 KRTAP2-2Q9BYT5 123 aa3.77□□□□□ -1.81
CDH1-205ENST00000562836 LCE5AQ5TCM9 118 aa3.72□□□□□ -1.81
CDH1-205ENST00000562836 ABCA13Q86UQ4 5058 aa3.71□□□□□ -1.82
CDH1-205ENST00000562836 KRTAP4-5Q9BYR2 181 aa3.66□□□□□ -1.82
CDH1-205ENST00000562836 LPAP08519 4548 aa3.65□□□□□ -1.83
CDH1-205ENST00000562836 MT1HL1P0DM35 61 aa3.63□□□□□ -1.83
CDH1-205ENST00000562836 LCE1AQ5T7P2 110 aa3.62□□□□□ -1.83
CDH1-205ENST00000562836 LRP2P98164 4655 aa3.62□□□□□ -1.83
CDH1-205ENST00000562836 HERC2O95714 4834 aa3.59□□□□□ -1.84
CDH1-205ENST00000562836 LCE1EQ5T753 118 aa3.56□□□□□ -1.84
CDH1-205ENST00000562836 PCLOQ9Y6V0 5065 aa3.54□□□□□ -1.84
CDH1-205ENST00000562836 KRTAP6-3Q3LI67 103 aa3.53□□□□□ -1.84
CDH1-205ENST00000562836 BIRC6Q9NR09 4857 aa3.52□□□□□ -1.85
CDH1-205ENST00000562836 LCE3AQ5TA76 89 aa3.52□□□□□ -1.85
CDH1-205ENST00000562836 KRTAP10-12P60413 245 aa3.51□□□□□ -1.85
CDH1-205ENST00000562836 MUC2Q02817 5179 aa3.5□□□□□ -1.85
CDH1-205ENST00000562836 KRTAP9-4Q9BYQ2 154 aa3.49□□□□□ -1.85
CDH1-205ENST00000562836 HERC1Q15751 4861 aa3.48□□□□□ -1.85
CDH1-205ENST00000562836 LCE1FQ5T754 118 aa3.48□□□□□ -1.85
CDH1-205ENST00000562836 KRTAP19-2Q3LHN2 52 aa3.41□□□□□ -1.86
CDH1-205ENST00000562836 KRTAP19-4Q3LI73 84 aa3.41□□□□□ -1.86
CDH1-205ENST00000562836 MUC17Q685J3 4493 aa3.41□□□□□ -1.86
CDH1-205ENST00000562836 KRTAP4-1Q9BYQ7 146 aa3.4□□□□□ -1.87
CDH1-205ENST00000562836 LCE1DQ5T752 114 aa3.39□□□□□ -1.87
CDH1-205ENST00000562836 HMCN2Q8NDA2 5059 aa3.36□□□□□ -1.87
CDH1-205ENST00000562836 RNF213Q63HN8 5207 aa3.35□□□□□ -1.87
CDH1-205ENST00000562836 KRTAP9-6A0A140TA67 174 aa3.34□□□□□ -1.87
CDH1-205ENST00000562836 KRTAP8-1Q8IUC2 63 aa3.34□□□□□ -1.87
CDH1-205ENST00000562836 KRTAP2-3P0C7H8 128 aa3.33□□□□□ -1.88
CDH1-205ENST00000562836 KRTAP2-4Q9BYR9 128 aa3.33□□□□□ -1.88
CDH1-205ENST00000562836 KRTAP2-1Q9BYU5 128 aa3.33□□□□□ -1.88
CDH1-205ENST00000562836 UBR4Q5T4S7 5183 aa3.32□□□□□ -1.88
CDH1-205ENST00000562836 FAT4Q6V0I7 4981 aa3.32□□□□□ -1.88
CDH1-205ENST00000562836 KRTAP9-9Q9BYP9 154 aa3.3□□□□□ -1.88
CDH1-205ENST00000562836 KRTAP12-4P60329 112 aa3.29□□□□□ -1.88
CDH1-205ENST00000562836 KRTAP12-3P60328 96 aa3.28□□□□□ -1.88
CDH1-205ENST00000562836 KRTAP10-5P60370 271 aa3.27□□□□□ -1.89
CDH1-205ENST00000562836 M0R2T5 61 aa3.27□□□□□ -1.89
CDH1-205ENST00000562836 FLGP20930 4061 aaPredicted RBP3.24□□□□□ -1.89
CDH1-205ENST00000562836 LCE3CQ5T5A8 94 aa3.23□□□□□ -1.89
CDH1-205ENST00000562836 SPRR2GQ9BYE4 73 aa3.22□□□□□ -1.89
CDH1-205ENST00000562836 KRTAP9-7A8MTY7 169 aa3.17□□□□□ -1.9
CDH1-205ENST00000562836 KRTAP9-6A8MVA2 160 aa3.17□□□□□ -1.9
CDH1-205ENST00000562836 KRTAP10-7P60409 375 aaPredicted RBP3.17□□□□□ -1.9
CDH1-205ENST00000562836 KRTAP19-1Q8IUB9 90 aa3.17□□□□□ -1.9
CDH1-205ENST00000562836 LCE4AQ5TA78 99 aa3.13□□□□□ -1.91
CDH1-205ENST00000562836 MT1HP80294 61 aa3.06□□□□□ -1.92
CDH1-205ENST00000562836 KRTAP19-8Q3LI54 63 aa3.05□□□□□ -1.92
CDH1-205ENST00000562836 MT3P25713 68 aa3.04□□□□□ -1.92
CDH1-205ENST00000562836 LCE3EQ5T5B0 92 aa3.04□□□□□ -1.92
CDH1-205ENST00000562836 PRM1P04553 51 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms