RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 A0A1B0GVY2 172 aa3.51□□□□□ -1.85
USP3-210ENST00000559192 KRTAP3-3Q9BYR6 98 aa3.47□□□□□ -1.85
USP3-210ENST00000559192 DNAH17Q9UFH2 4485 aa3.46□□□□□ -1.86
USP3-210ENST00000559192 KRTAP3-2Q9BYR7 98 aa3.45□□□□□ -1.86
USP3-210ENST00000559192 INE1O15225 51 aa3.45□□□□□ -1.86
USP3-210ENST00000559192 KRTAP15-1Q3LI76 137 aa3.44□□□□□ -1.86
USP3-210ENST00000559192 DNAH7Q8WXX0 4024 aa3.44□□□□□ -1.86
USP3-210ENST00000559192 VPS13DQ5THJ4 4388 aa3.44□□□□□ -1.86
USP3-210ENST00000559192 STARD9Q9P2P6 4700 aa3.44□□□□□ -1.86
USP3-210ENST00000559192 DNAH2Q9P225 4427 aa3.44□□□□□ -1.86
USP3-210ENST00000559192 DYNC2H1Q8NCM8 4307 aaKnown RBP3.43□□□□□ -1.86
USP3-210ENST00000559192 DNAH6Q9C0G6 4158 aa3.42□□□□□ -1.86
USP3-210ENST00000559192 KMT2AQ03164 3969 aa3.42□□□□□ -1.86
USP3-210ENST00000559192 DNAH11Q96DT5 4516 aa3.41□□□□□ -1.86
USP3-210ENST00000559192 PRO2289Q9P1D8 64 aa3.4□□□□□ -1.86
USP3-210ENST00000559192 HECTD4Q9Y4D8 3996 aa3.38□□□□□ -1.87
USP3-210ENST00000559192 KRTAP10-4P60372 401 aaPredicted RBP3.36□□□□□ -1.87
USP3-210ENST00000559192 KRTAP10-10P60014 251 aa3.33□□□□□ -1.88
USP3-210ENST00000559192 DNAH5Q8TE73 4624 aa3.32□□□□□ -1.88
USP3-210ENST00000559192 LRP1BQ9NZR2 4599 aa3.32□□□□□ -1.88
USP3-210ENST00000559192 VPS13BQ7Z7G8 4022 aa3.31□□□□□ -1.88
USP3-210ENST00000559192 PRKDCP78527 4128 aaKnown RBP3.3□□□□□ -1.88
USP3-210ENST00000559192 KRTAP17-1Q9BYP8 105 aa3.26□□□□□ -1.89
USP3-210ENST00000559192 MT1HL1P0DM35 61 aa3.26□□□□□ -1.89
USP3-210ENST00000559192 SACSQ9NZJ4 4579 aa3.25□□□□□ -1.89
USP3-210ENST00000559192 LORP23490 312 aaPredicted RBP3.24□□□□□ -1.89
USP3-210ENST00000559192 PKHD1L1Q86WI1 4243 aa3.24□□□□□ -1.89
USP3-210ENST00000559192 FAT1Q14517 4588 aa3.21□□□□□ -1.9
USP3-210ENST00000559192 DYNC1H1Q14204 4646 aaKnown RBP3.2□□□□□ -1.9
USP3-210ENST00000559192 FAT2Q9NYQ8 4349 aa3.19□□□□□ -1.9
USP3-210ENST00000559192 KRTAP4-5Q9BYR2 181 aa3.14□□□□□ -1.91
USP3-210ENST00000559192 HYDINQ4G0P3 5121 aa3.14□□□□□ -1.91
USP3-210ENST00000559192 KRTAP23-1A1A580 65 aa3.12□□□□□ -1.91
USP3-210ENST00000559192 PKHD1P08F94 4074 aa3.11□□□□□ -1.91
USP3-210ENST00000559192 PKD1P98161 4303 aa3.11□□□□□ -1.91
USP3-210ENST00000559192 DNHD1Q96M86 4753 aa3.09□□□□□ -1.91
USP3-210ENST00000559192 APOBP04114 4563 aaKnown RBP3.09□□□□□ -1.91
USP3-210ENST00000559192 LCE2AQ5TA79 106 aaPredicted RBP3.08□□□□□ -1.92
USP3-210ENST00000559192 FAT3Q8TDW7 4589 aa3.08□□□□□ -1.92
USP3-210ENST00000559192 KRTAP4-1Q9BYQ7 146 aa3.06□□□□□ -1.92
USP3-210ENST00000559192 CRCT1Q9UGL9 99 aa3.05□□□□□ -1.92
USP3-210ENST00000559192 MYCBP2O75592 4640 aa3.05□□□□□ -1.92
USP3-210ENST00000559192 LCE3AQ5TA76 89 aa3.04□□□□□ -1.92
USP3-210ENST00000559192 LRP1Q07954 4544 aaKnown RBP3.03□□□□□ -1.92
USP3-210ENST00000559192 KRTAP10-12P60413 245 aa3.01□□□□□ -1.93
USP3-210ENST00000559192 BIRC6Q9NR09 4857 aa3.01□□□□□ -1.93
USP3-210ENST00000559192 KRTAP12-3P60328 96 aa2.99□□□□□ -1.93
USP3-210ENST00000559192 LCE2BO14633 110 aa2.99□□□□□ -1.93
USP3-210ENST00000559192 KRTAP9-6A0A140TA67 174 aa2.99□□□□□ -1.93
USP3-210ENST00000559192 TNXBP22105 4242 aa2.96□□□□□ -1.94
USP3-210ENST00000559192 KRTAP10-5P60370 271 aa2.95□□□□□ -1.94
USP3-210ENST00000559192 HSPG2P98160 4391 aa2.94□□□□□ -1.94
USP3-210ENST00000559192 RYR1P21817 5038 aa2.93□□□□□ -1.94
USP3-210ENST00000559192 LPAP08519 4548 aa2.93□□□□□ -1.94
USP3-210ENST00000559192 RYR2Q92736 4967 aa2.89□□□□□ -1.95
USP3-210ENST00000559192 LRP2P98164 4655 aa2.87□□□□□ -1.95
USP3-210ENST00000559192 KMT2CQ8NEZ4 4911 aaKnown RBP2.87□□□□□ -1.95
USP3-210ENST00000559192 RYR3Q15413 4870 aa2.85□□□□□ -1.95
USP3-210ENST00000559192 KRTAP9-2Q9BYQ4 174 aa2.83□□□□□ -1.96
USP3-210ENST00000559192 SPRR2GQ9BYE4 73 aa2.82□□□□□ -1.96
USP3-210ENST00000559192 MT1HP80294 61 aa2.81□□□□□ -1.96
USP3-210ENST00000559192 KIAA1109Q2LD37 5005 aa2.8□□□□□ -1.96
USP3-210ENST00000559192 MUC17Q685J3 4493 aa2.8□□□□□ -1.96
USP3-210ENST00000559192 MT2AP02795 61 aa2.78□□□□□ -1.96
USP3-210ENST00000559192 MT1FP04733 61 aa2.78□□□□□ -1.96
USP3-210ENST00000559192 LOC100996750A0A140TA64 210 aa2.75□□□□□ -1.97
USP3-210ENST00000559192 KRTAP4-6Q9BYQ5 205 aa2.75□□□□□ -1.97
USP3-210ENST00000559192 SPRR5A0A1B0GTR4 108 aa2.74□□□□□ -1.97
USP3-210ENST00000559192 KRTAP19-1Q8IUB9 90 aa2.73□□□□□ -1.97
USP3-210ENST00000559192 KRTAP19-5Q3LI72 72 aa2.71□□□□□ -1.98
USP3-210ENST00000559192 KRTAP8-1Q8IUC2 63 aa2.7□□□□□ -1.98
USP3-210ENST00000559192 KRTAP10-7P60409 375 aaPredicted RBP2.7□□□□□ -1.98
USP3-210ENST00000559192 KRTAP19-4Q3LI73 84 aa2.69□□□□□ -1.98
USP3-210ENST00000559192 LCE2CQ5TA81 110 aa2.69□□□□□ -1.98
USP3-210ENST00000559192 LCE3CQ5T5A8 94 aa2.67□□□□□ -1.98
USP3-210ENST00000559192 KRTAP19-2Q3LHN2 52 aa2.67□□□□□ -1.98
USP3-210ENST00000559192 MT1XP80297 61 aa2.65□□□□□ -1.98
USP3-210ENST00000559192 HERC2O95714 4834 aa2.65□□□□□ -1.99
USP3-210ENST00000559192 KRTAP9-7A8MTY7 169 aa2.64□□□□□ -1.99
USP3-210ENST00000559192 ABCA13Q86UQ4 5058 aa2.62□□□□□ -1.99
USP3-210ENST00000559192 KRTAP19-8Q3LI54 63 aa2.61□□□□□ -1.99
USP3-210ENST00000559192 FLGP20930 4061 aaPredicted RBP2.61□□□□□ -1.99
USP3-210ENST00000559192 MT1BP07438 61 aa2.61□□□□□ -1.99
USP3-210ENST00000559192 PCLOQ9Y6V0 5065 aa2.61□□□□□ -1.99
USP3-210ENST00000559192 EPPK1P58107 5090 aaKnown RBP2.6□□□□□ -1.99
USP3-210ENST00000559192 KRTAP9-8Q9BYQ0 159 aa2.58□□□□□ -2
USP3-210ENST00000559192 HERC1Q15751 4861 aa2.57□□□□□ -2
USP3-210ENST00000559192 KRTAP12-4P60329 112 aa2.55□□□□□ -2
USP3-210ENST00000559192 KRTAP4-8A0A0G2JLE6 195 aa2.53□□□□□ -2
USP3-210ENST00000559192 KRTAP4-8Q9BYQ9 185 aa2.53□□□□□ -2
USP3-210ENST00000559192 MUC2Q02817 5179 aa2.5□□□□□ -2.01
USP3-210ENST00000559192 KRTAP9-3Q9BYQ3 159 aa2.49□□□□□ -2.01
USP3-210ENST00000559192 KRTAP4-12Q9BQ66 201 aa2.49□□□□□ -2.01
USP3-210ENST00000559192 KRTAP4-7Q9BYR0 210 aa2.48□□□□□ -2.01
USP3-210ENST00000559192 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.46□□□□□ -2.02
USP3-210ENST00000559192 KRTAP20-1Q3LI63 56 aa2.45□□□□□ -2.02
USP3-210ENST00000559192 LCE3BQ5TA77 95 aa2.45□□□□□ -2.02
USP3-210ENST00000559192 HMCN2Q8NDA2 5059 aa2.43□□□□□ -2.02
USP3-210ENST00000559192 MT1GP13640 62 aa2.42□□□□□ -2.02
USP3-210ENST00000559192 MT3P25713 68 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms