RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 BSNQ9UPA5 3926 aa6.98□□□□□ -1.29
SYNE3-204ENST00000555759 KRTAP10-5P60370 271 aa6.97□□□□□ -1.29
SYNE3-204ENST00000555759 DNAH11Q96DT5 4516 aa6.97□□□□□ -1.29
SYNE3-204ENST00000555759 DNAH2Q9P225 4427 aa6.95□□□□□ -1.3
SYNE3-204ENST00000555759 DNAH10Q8IVF4 4471 aa6.94□□□□□ -1.3
SYNE3-204ENST00000555759 SPRR2GQ9BYE4 73 aa6.88□□□□□ -1.31
SYNE3-204ENST00000555759 VPS13CQ709C8 3753 aa6.86□□□□□ -1.31
SYNE3-204ENST00000555759 DNAH1Q9P2D7 4330 aa6.81□□□□□ -1.32
SYNE3-204ENST00000555759 KRTAP8-1Q8IUC2 63 aa6.81□□□□□ -1.32
SYNE3-204ENST00000555759 DNAH5Q8TE73 4624 aa6.81□□□□□ -1.32
SYNE3-204ENST00000555759 KRTAP4-1Q9BYQ7 146 aa6.78□□□□□ -1.32
SYNE3-204ENST00000555759 DNAH9Q9NYC9 4486 aa6.77□□□□□ -1.33
SYNE3-204ENST00000555759 DNAH17Q9UFH2 4485 aa6.76□□□□□ -1.33
SYNE3-204ENST00000555759 KRTAP19-4Q3LI73 84 aa6.72□□□□□ -1.33
SYNE3-204ENST00000555759 LCE3CQ5T5A8 94 aa6.7□□□□□ -1.34
SYNE3-204ENST00000555759 CSMD3Q7Z407 3707 aa6.69□□□□□ -1.34
SYNE3-204ENST00000555759 DNAH8Q96JB1 4490 aa6.68□□□□□ -1.34
SYNE3-204ENST00000555759 DNHD1Q96M86 4753 aa6.63□□□□□ -1.35
SYNE3-204ENST00000555759 SPRR5A0A1B0GTR4 108 aa6.63□□□□□ -1.35
SYNE3-204ENST00000555759 MT2AP02795 61 aa6.63□□□□□ -1.35
SYNE3-204ENST00000555759 VPS13DQ5THJ4 4388 aa6.62□□□□□ -1.35
SYNE3-204ENST00000555759 PLECQ15149 4684 aaKnown RBP6.62□□□□□ -1.35
SYNE3-204ENST00000555759 AKAP9Q99996 3911 aa6.61□□□□□ -1.35
SYNE3-204ENST00000555759 MT1HP80294 61 aa6.6□□□□□ -1.35
SYNE3-204ENST00000555759 KRTAP19-5Q3LI72 72 aa6.59□□□□□ -1.35
SYNE3-204ENST00000555759 FAT1Q14517 4588 aa6.58□□□□□ -1.36
SYNE3-204ENST00000555759 ZNF469Q96JG9 3925 aaPredicted RBP6.58□□□□□ -1.36
SYNE3-204ENST00000555759 SACSQ9NZJ4 4579 aa6.52□□□□□ -1.37
SYNE3-204ENST00000555759 DNAH3Q8TD57 4116 aa6.49□□□□□ -1.37
SYNE3-204ENST00000555759 MT1FP04733 61 aa6.47□□□□□ -1.37
SYNE3-204ENST00000555759 DYNC1H1Q14204 4646 aaKnown RBP6.39□□□□□ -1.39
SYNE3-204ENST00000555759 DYNC2H1Q8NCM8 4307 aaKnown RBP6.39□□□□□ -1.39
SYNE3-204ENST00000555759 LRP1BQ9NZR2 4599 aa6.35□□□□□ -1.39
SYNE3-204ENST00000555759 KRTAP19-8Q3LI54 63 aa6.35□□□□□ -1.39
SYNE3-204ENST00000555759 RYR1P21817 5038 aa6.32□□□□□ -1.4
SYNE3-204ENST00000555759 KRTAP19-1Q8IUB9 90 aa6.31□□□□□ -1.4
SYNE3-204ENST00000555759 FAT2Q9NYQ8 4349 aa6.26□□□□□ -1.41
SYNE3-204ENST00000555759 KRTAP10-7P60409 375 aaPredicted RBP6.26□□□□□ -1.41
SYNE3-204ENST00000555759 APOBP04114 4563 aaKnown RBP6.25□□□□□ -1.41
SYNE3-204ENST00000555759 ANK2Q01484 3957 aa6.22□□□□□ -1.41
SYNE3-204ENST00000555759 STARD9Q9P2P6 4700 aa6.21□□□□□ -1.42
SYNE3-204ENST00000555759 KRTAP12-4P60329 112 aa6.19□□□□□ -1.42
SYNE3-204ENST00000555759 MT1XP80297 61 aa6.17□□□□□ -1.42
SYNE3-204ENST00000555759 CMYA5Q8N3K9 4069 aa6.17□□□□□ -1.42
SYNE3-204ENST00000555759 VPS13BQ7Z7G8 4022 aa6.11□□□□□ -1.43
SYNE3-204ENST00000555759 SPRR2FQ96RM1 72 aa6.1□□□□□ -1.43
SYNE3-204ENST00000555759 PRKDCP78527 4128 aaKnown RBP6.09□□□□□ -1.43
SYNE3-204ENST00000555759 DNAH6Q9C0G6 4158 aa6.08□□□□□ -1.44
SYNE3-204ENST00000555759 LRP1Q07954 4544 aaKnown RBP6.06□□□□□ -1.44
SYNE3-204ENST00000555759 MT1BP07438 61 aa6.03□□□□□ -1.44
SYNE3-204ENST00000555759 RYR3Q15413 4870 aa6.01□□□□□ -1.45
SYNE3-204ENST00000555759 KRTAP17-1Q9BYP8 105 aa5.98□□□□□ -1.45
SYNE3-204ENST00000555759 LCE3BQ5TA77 95 aa5.98□□□□□ -1.45
SYNE3-204ENST00000555759 KIAA1109Q2LD37 5005 aa5.95□□□□□ -1.46
SYNE3-204ENST00000555759 FAT3Q8TDW7 4589 aa5.95□□□□□ -1.46
SYNE3-204ENST00000555759 KMT2AQ03164 3969 aa5.94□□□□□ -1.46
SYNE3-204ENST00000555759 DNAH7Q8WXX0 4024 aa5.93□□□□□ -1.46
SYNE3-204ENST00000555759 LYSTQ99698 3801 aa5.91□□□□□ -1.46
SYNE3-204ENST00000555759 FRAS1Q86XX4 4008 aa5.9□□□□□ -1.46
SYNE3-204ENST00000555759 MT1GP13640 62 aa5.9□□□□□ -1.47
SYNE3-204ENST00000555759 MYCBP2O75592 4640 aa5.89□□□□□ -1.47
SYNE3-204ENST00000555759 LCE3DQ9BYE3 92 aa5.86□□□□□ -1.47
SYNE3-204ENST00000555759 KRTAP9-8Q9BYQ0 159 aa5.86□□□□□ -1.47
SYNE3-204ENST00000555759 HSPG2P98160 4391 aa5.84□□□□□ -1.47
SYNE3-204ENST00000555759 LCE3EQ5T5B0 92 aa5.83□□□□□ -1.48
SYNE3-204ENST00000555759 HECTD4Q9Y4D8 3996 aa5.81□□□□□ -1.48
SYNE3-204ENST00000555759 KRTAP4-8A0A0G2JLE6 195 aa5.75□□□□□ -1.49
SYNE3-204ENST00000555759 SPRR2EP22531 72 aa5.75□□□□□ -1.49
SYNE3-204ENST00000555759 SPRR2BP35325 72 aa5.75□□□□□ -1.49
SYNE3-204ENST00000555759 SPRR2AP35326 72 aa5.75□□□□□ -1.49
SYNE3-204ENST00000555759 KRTAP4-8Q9BYQ9 185 aa5.75□□□□□ -1.49
SYNE3-204ENST00000555759 RYR2Q92736 4967 aa5.74□□□□□ -1.49
SYNE3-204ENST00000555759 HERC1Q15751 4861 aa5.74□□□□□ -1.49
SYNE3-204ENST00000555759 KRTAP9-3Q9BYQ3 159 aa5.72□□□□□ -1.49
SYNE3-204ENST00000555759 LCE2CQ5TA81 110 aa5.71□□□□□ -1.49
SYNE3-204ENST00000555759 MT1LQ93083 61 aa5.7□□□□□ -1.5
SYNE3-204ENST00000555759 HERC2O95714 4834 aa5.69□□□□□ -1.5
SYNE3-204ENST00000555759 BIRC6Q9NR09 4857 aa5.66□□□□□ -1.5
SYNE3-204ENST00000555759 PKD1P98161 4303 aa5.59□□□□□ -1.51
SYNE3-204ENST00000555759 KRTAP19-2Q3LHN2 52 aa5.56□□□□□ -1.52
SYNE3-204ENST00000555759 PCLOQ9Y6V0 5065 aa5.56□□□□□ -1.52
SYNE3-204ENST00000555759 SPRR2DP22532 72 aa5.56□□□□□ -1.52
SYNE3-204ENST00000555759 KRTAP4-7Q9BYR0 210 aa5.55□□□□□ -1.52
SYNE3-204ENST00000555759 KRTAP19-3Q7Z4W3 81 aa5.55□□□□□ -1.52
SYNE3-204ENST00000555759 MT1EP04732 61 aa5.54□□□□□ -1.52
SYNE3-204ENST00000555759 LRP2P98164 4655 aa5.51□□□□□ -1.53
SYNE3-204ENST00000555759 LCE2BO14633 110 aa5.5□□□□□ -1.53
SYNE3-204ENST00000555759 PRM1P04553 51 aa5.46□□□□□ -1.54
SYNE3-204ENST00000555759 HYDINQ4G0P3 5121 aa5.45□□□□□ -1.54
SYNE3-204ENST00000555759 PKHD1L1Q86WI1 4243 aa5.4□□□□□ -1.54
SYNE3-204ENST00000555759 KRTAP2-3P0C7H8 128 aa5.4□□□□□ -1.54
SYNE3-204ENST00000555759 KRTAP2-4Q9BYR9 128 aa5.4□□□□□ -1.54
SYNE3-204ENST00000555759 KRTAP2-1Q9BYU5 128 aa5.4□□□□□ -1.54
SYNE3-204ENST00000555759 MUC17Q685J3 4493 aa5.38□□□□□ -1.55
SYNE3-204ENST00000555759 MT1MQ8N339 61 aa5.34□□□□□ -1.56
SYNE3-204ENST00000555759 LPAP08519 4548 aa5.32□□□□□ -1.56
SYNE3-204ENST00000555759 FLGP20930 4061 aaPredicted RBP5.3□□□□□ -1.56
SYNE3-204ENST00000555759 PKHD1P08F94 4074 aa5.3□□□□□ -1.56
SYNE3-204ENST00000555759 KMT2CQ8NEZ4 4911 aaKnown RBP5.29□□□□□ -1.56
SYNE3-204ENST00000555759 EPPK1P58107 5090 aaKnown RBP5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 462.8 ms