RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 DCAF8L2P0C7V8 631 aa28.47■■■□□ 2.15
SYNE3-204ENST00000555759 PELP1Q8IZL8 1130 aaKnown RBP28.27■■■□□ 2.12
SYNE3-204ENST00000555759 SUPT5HO00267 1087 aaKnown RBP28.17■■■□□ 2.1
SYNE3-204ENST00000555759 NISCHQ9Y2I1 1504 aa27.9■■■□□ 2.06
SYNE3-204ENST00000555759 MYT1Q01538 1121 aa27.82■■■□□ 2.04
SYNE3-204ENST00000555759 CENPBP07199 599 aaPredicted RBP27.37■■□□□ 1.97
SYNE3-204ENST00000555759 ZEB1P37275 1124 aaPredicted RBP27.34■■□□□ 1.97
SYNE3-204ENST00000555759 PCGF6Q9BYE7 350 aa27.34■■□□□ 1.97
SYNE3-204ENST00000555759 SHROOM4Q9ULL8 1493 aa27.34■■□□□ 1.97
SYNE3-204ENST00000555759 ERICH6Q7L0X2 663 aa26.92■■□□□ 1.9
SYNE3-204ENST00000555759 CCER1Q8TC90 406 aaPredicted RBP26.9■■□□□ 1.9
SYNE3-204ENST00000555759 EHMT2Q96KQ7 1210 aa26.9■■□□□ 1.9
SYNE3-204ENST00000555759 APLP2Q06481 763 aa26.85■■□□□ 1.89
SYNE3-204ENST00000555759 HRCP23327 699 aa26.64■■□□□ 1.85
SYNE3-204ENST00000555759 FAM9AQ8IZU1 332 aaPredicted RBP26.46■■□□□ 1.83
SYNE3-204ENST00000555759 NEFLP07196 543 aa26.37■■□□□ 1.81
SYNE3-204ENST00000555759 TRIM26Q12899 539 aaPredicted RBP26.29■■□□□ 1.8
SYNE3-204ENST00000555759 TTBK1Q5TCY1 1321 aaPredicted RBP26.23■■□□□ 1.79
SYNE3-204ENST00000555759 YTHDC1Q96MU7 727 aaKnown RBP26.22■■□□□ 1.79
SYNE3-204ENST00000555759 TRIM41Q8WV44 630 aa26.18■■□□□ 1.78
SYNE3-204ENST00000555759 PPARGC1BQ86YN6 1023 aaKnown RBP25.72■■□□□ 1.71
SYNE3-204ENST00000555759 UBTFP17480 764 aaKnown RBP25.68■■□□□ 1.7
SYNE3-204ENST00000555759 CHIC1Q5VXU3 224 aa25.54■■□□□ 1.68
SYNE3-204ENST00000555759 DIEXFQ68CQ4 756 aaKnown RBP25.53■■□□□ 1.68
SYNE3-204ENST00000555759 RANGAP1P46060 587 aaPredicted RBP25.51■■□□□ 1.67
SYNE3-204ENST00000555759 DAXXQ9UER7 740 aaPredicted RBP25.48■■□□□ 1.67
SYNE3-204ENST00000555759 GTF3C3Q9Y5Q9 886 aa25.38■■□□□ 1.65
SYNE3-204ENST00000555759 LOC105371045A0A1W2PR82 267 aa25.36■■□□□ 1.65
SYNE3-204ENST00000555759 RTL5Q5HYW3 569 aaPredicted RBP25.36■■□□□ 1.65
SYNE3-204ENST00000555759 ATP1B4Q9UN42 357 aaPredicted RBP25.27■■□□□ 1.64
SYNE3-204ENST00000555759 ACIN1Q9UKV3 1341 aaKnown RBP25.17■■□□□ 1.62
SYNE3-204ENST00000555759 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.15■■□□□ 1.62
SYNE3-204ENST00000555759 HNRNPUL2Q1KMD3 747 aaKnown RBP25.06■■□□□ 1.6
SYNE3-204ENST00000555759 ZNF316A6NFI3 1004 aaPredicted RBP24.93■■□□□ 1.58
SYNE3-204ENST00000555759 CLSPNQ9HAW4 1339 aa24.91■■□□□ 1.58
SYNE3-204ENST00000555759 CDK11AQ9UQ88 783 aaPredicted RBP24.89■■□□□ 1.57
SYNE3-204ENST00000555759 ITGAEP38570 1179 aa24.85■■□□□ 1.57
SYNE3-204ENST00000555759 BCANQ96GW7 911 aa24.78■■□□□ 1.56
SYNE3-204ENST00000555759 POLR3GLQ9BT43 218 aa24.71■■□□□ 1.55
SYNE3-204ENST00000555759 MYT1LQ9UL68 1186 aa24.68■■□□□ 1.54
SYNE3-204ENST00000555759 ANP32CO43423 234 aa24.62■■□□□ 1.53
SYNE3-204ENST00000555759 DCAF1Q9Y4B6 1507 aa24.51■■□□□ 1.51
SYNE3-204ENST00000555759 SCAF1Q9H7N4 1312 aaKnown RBP24.5■■□□□ 1.51
SYNE3-204ENST00000555759 ANP32AP39687 249 aaKnown RBP24.48■■□□□ 1.51
SYNE3-204ENST00000555759 CNGB1Q14028 1251 aaPredicted RBP24.42■■□□□ 1.5
SYNE3-204ENST00000555759 NEUROD1Q13562 356 aa24.41■■□□□ 1.5
SYNE3-204ENST00000555759 GLIPR1L2Q4G1C9 344 aa24.3■■□□□ 1.48
SYNE3-204ENST00000555759 FKBP8Q14318 412 aa24.26■■□□□ 1.47
SYNE3-204ENST00000555759 FAM50AQ14320 339 aaKnown RBP24.26■■□□□ 1.47
SYNE3-204ENST00000555759 EIF5BO60841 1220 aaKnown RBP24.24■■□□□ 1.47
SYNE3-204ENST00000555759 TRIM52Q96A61 297 aa24.1■■□□□ 1.45
SYNE3-204ENST00000555759 ANP32EQ9BTT0 268 aa24.07■■□□□ 1.44
SYNE3-204ENST00000555759 NPM2Q86SE8 214 aaKnown RBP24.01■■□□□ 1.43
SYNE3-204ENST00000555759 ZBTB47Q9UFB7 747 aaPredicted RBP23.97■■□□□ 1.43
SYNE3-204ENST00000555759 ANP32BQ92688 251 aaKnown RBP23.94■■□□□ 1.42
SYNE3-204ENST00000555759 SLC4A1APQ9BWU0 796 aaKnown RBP23.92■■□□□ 1.42
SYNE3-204ENST00000555759 HNRNPUQ00839 825 aaKnown RBP eCLIP23.88■■□□□ 1.41
SYNE3-204ENST00000555759 NBR1Q14596 966 aa23.87■■□□□ 1.41
SYNE3-204ENST00000555759 CANXP27824 592 aaKnown RBP23.87■■□□□ 1.41
SYNE3-204ENST00000555759 MIER1Q8N108 512 aa23.86■■□□□ 1.41
SYNE3-204ENST00000555759 CSRNP3Q8WYN3 585 aa23.85■■□□□ 1.41
SYNE3-204ENST00000555759 ZNF326Q5BKZ1 582 aaKnown RBP23.77■■□□□ 1.4
SYNE3-204ENST00000555759 CCDC136Q96JN2 1154 aa23.76■■□□□ 1.39
SYNE3-204ENST00000555759 DDX10Q13206 875 aaKnown RBP23.76■■□□□ 1.39
SYNE3-204ENST00000555759 UPF2Q9HAU5 1272 aaKnown RBP23.75■■□□□ 1.39
SYNE3-204ENST00000555759 CCDC180Q9P1Z9 1646 aa23.73■■□□□ 1.39
SYNE3-204ENST00000555759 TONSLQ96HA7 1378 aa23.71■■□□□ 1.39
SYNE3-204ENST00000555759 BCL11AQ9H165 835 aa23.61■■□□□ 1.37
SYNE3-204ENST00000555759 FAM9BQ8IZU0 186 aa23.61■■□□□ 1.37
SYNE3-204ENST00000555759 DDRGK1Q96HY6 314 aa23.58■■□□□ 1.37
SYNE3-204ENST00000555759 HSP90AA1P07900 732 aaKnown RBP23.58■■□□□ 1.37
SYNE3-204ENST00000555759 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.52■■□□□ 1.36
SYNE3-204ENST00000555759 NEFMP07197 916 aa23.49■■□□□ 1.35
SYNE3-204ENST00000555759 PPM1GO15355 546 aaPredicted RBP23.47■■□□□ 1.35
SYNE3-204ENST00000555759 MYO15BQ96JP2 1530 aa23.47■■□□□ 1.35
SYNE3-204ENST00000555759 MRS2Q9HD23 443 aa23.45■■□□□ 1.34
SYNE3-204ENST00000555759 SUPT16HQ9Y5B9 1047 aaKnown RBP23.45■■□□□ 1.34
SYNE3-204ENST00000555759 ERICH6BQ5W0A0 696 aa23.44■■□□□ 1.34
SYNE3-204ENST00000555759 TMC1Q8TDI8 760 aa23.42■■□□□ 1.34
SYNE3-204ENST00000555759 IRX6P78412 446 aaPredicted RBP23.41■■□□□ 1.34
SYNE3-204ENST00000555759 BECN1Q14457 450 aa23.37■■□□□ 1.33
SYNE3-204ENST00000555759 NOP58Q9Y2X3 529 aaKnown RBP23.34■■□□□ 1.33
SYNE3-204ENST00000555759 TRIM44Q96DX7 344 aaPredicted RBP23.33■■□□□ 1.33
SYNE3-204ENST00000555759 PPP4R2Q9NY27 417 aa23.31■■□□□ 1.32
SYNE3-204ENST00000555759 ARXQ96QS3 562 aa23.29■■□□□ 1.32
SYNE3-204ENST00000555759 TNNT2P45379 298 aaPredicted RBP23.28■■□□□ 1.32
SYNE3-204ENST00000555759 ZCCHC6Q5VYS8 1495 aaKnown RBP23.25■■□□□ 1.31
SYNE3-204ENST00000555759 P3H3Q8IVL6 736 aa23.22■■□□□ 1.31
SYNE3-204ENST00000555759 DEKP35659 375 aaKnown RBP23.21■■□□□ 1.31
SYNE3-204ENST00000555759 SALL2Q9Y467 1007 aaPredicted RBP23.21■■□□□ 1.31
SYNE3-204ENST00000555759 EIF4G2P78344 907 aaKnown RBP eCLIP23.2■■□□□ 1.31
SYNE3-204ENST00000555759 WDR43Q15061 677 aaKnown RBP eCLIP23.16■■□□□ 1.3
SYNE3-204ENST00000555759 RBM19Q9Y4C8 960 aaKnown RBP23.16■■□□□ 1.3
SYNE3-204ENST00000555759 GOLGA6L22H0YM25 854 aa23.15■■□□□ 1.3
SYNE3-204ENST00000555759 CLIP1P30622 1438 aa23.14■■□□□ 1.3
SYNE3-204ENST00000555759 RTN4Q9NQC3 1192 aaKnown RBP23.13■■□□□ 1.29
SYNE3-204ENST00000555759 EEA1Q15075 1411 aa23.12■■□□□ 1.29
SYNE3-204ENST00000555759 NAP1L5Q96NT1 182 aaPredicted RBP23.12■■□□□ 1.29
SYNE3-204ENST00000555759 CEP162Q5TB80 1403 aa23.09■■□□□ 1.29
SYNE3-204ENST00000555759 LAS1LQ9Y4W2 734 aaKnown RBP23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms