RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 KAAG1Q9UBP8 84 aa0.52□□□□□ -2.33
VRK1-205ENST00000555402 MUC2Q02817 5179 aa0.52□□□□□ -2.33
VRK1-205ENST00000555402 NIPBLQ6KC79 2804 aaeCLIP0.52□□□□□ -2.33
VRK1-205ENST00000555402 ZZEF1O43149 2961 aa0.52□□□□□ -2.33
VRK1-205ENST00000555402 MUC5BQ9HC84 5762 aaPredicted RBP0.52□□□□□ -2.33
VRK1-205ENST00000555402 ACANP16112 2415 aa0.52□□□□□ -2.33
VRK1-205ENST00000555402 HYDINQ4G0P3 5121 aa0.51□□□□□ -2.33
VRK1-205ENST00000555402 WDFY3Q8IZQ1 3526 aa0.51□□□□□ -2.33
VRK1-205ENST00000555402 EPPK1P58107 5090 aaKnown RBP0.51□□□□□ -2.33
VRK1-205ENST00000555402 ATMQ13315 3056 aa0.51□□□□□ -2.33
VRK1-205ENST00000555402 WFDC10BQ8IUB3 73 aa0.51□□□□□ -2.33
VRK1-205ENST00000555402 SPENQ96T58 3664 aaKnown RBP0.51□□□□□ -2.33
VRK1-205ENST00000555402 PRRC2CQ9Y520 2896 aaKnown RBP0.51□□□□□ -2.33
VRK1-205ENST00000555402 KMT2CQ8NEZ4 4911 aaKnown RBP0.5□□□□□ -2.33
VRK1-205ENST00000555402 HIVEP1P15822 2718 aa0.5□□□□□ -2.33
VRK1-205ENST00000555402 DMDP11532 3685 aa0.49□□□□□ -2.33
VRK1-205ENST00000555402 MAP1AP78559 2803 aaPredicted RBP0.49□□□□□ -2.33
VRK1-205ENST00000555402 HERC2O95714 4834 aa0.49□□□□□ -2.33
VRK1-205ENST00000555402 KRTAP20-1Q3LI63 56 aa0.49□□□□□ -2.33
VRK1-205ENST00000555402 RYR2Q92736 4967 aa0.49□□□□□ -2.33
VRK1-205ENST00000555402 FAT2Q9NYQ8 4349 aa0.49□□□□□ -2.33
VRK1-205ENST00000555402 TRIOO75962 3097 aa0.49□□□□□ -2.33
VRK1-205ENST00000555402 CLTCL1P53675 1640 aa0.49□□□□□ -2.33
VRK1-205ENST00000555402 MROH2BQ7Z745 1585 aa0.49□□□□□ -2.33
VRK1-205ENST00000555402 ATP7AQ04656 1500 aa0.48□□□□□ -2.33
VRK1-205ENST00000555402 OTOGQ6ZRI0 2925 aa0.48□□□□□ -2.33
VRK1-205ENST00000555402 ABCA13Q86UQ4 5058 aa0.48□□□□□ -2.33
VRK1-205ENST00000555402 KMT2AQ03164 3969 aa0.48□□□□□ -2.33
VRK1-205ENST00000555402 ADGRG4Q8IZF6 3080 aa0.48□□□□□ -2.33
VRK1-205ENST00000555402 AKAP9Q99996 3911 aa0.48□□□□□ -2.33
VRK1-205ENST00000555402 DMXL2Q8TDJ6 3036 aa0.48□□□□□ -2.33
VRK1-205ENST00000555402 SMIM2Q9BVW6 85 aa0.48□□□□□ -2.33
VRK1-205ENST00000555402 NOP10Q9NPE3 64 aaKnown RBP0.48□□□□□ -2.33
VRK1-205ENST00000555402 ACACAQ13085 2346 aa0.48□□□□□ -2.33
VRK1-205ENST00000555402 CSMD2Q7Z408 3487 aa0.48□□□□□ -2.33
VRK1-205ENST00000555402 LRP1Q07954 4544 aaKnown RBP0.48□□□□□ -2.33
VRK1-205ENST00000555402 NEBP20929 6669 aa0.48□□□□□ -2.33
VRK1-205ENST00000555402 SRRM2Q9UQ35 2752 aaKnown RBP0.47□□□□□ -2.33
VRK1-205ENST00000555402 VPS13CQ709C8 3753 aa0.47□□□□□ -2.33
VRK1-205ENST00000555402 HECTD4Q9Y4D8 3996 aa0.47□□□□□ -2.33
VRK1-205ENST00000555402 SYNE1Q8NF91 8797 aaKnown RBP0.47□□□□□ -2.33
VRK1-205ENST00000555402 SYNE2Q8WXH0 6885 aaKnown RBP0.47□□□□□ -2.33
VRK1-205ENST00000555402 MACF1Q9UPN3 7388 aaKnown RBP0.47□□□□□ -2.33
VRK1-205ENST00000555402 MGAQ8IWI9 3026 aa0.46□□□□□ -2.34
VRK1-205ENST00000555402 SAMD9LQ8IVG5 1584 aa0.46□□□□□ -2.34
VRK1-205ENST00000555402 PRKDCP78527 4128 aaKnown RBP0.46□□□□□ -2.34
VRK1-205ENST00000555402 IGLV5-48A0A075B6I7 105 aa0.46□□□□□ -2.34
VRK1-205ENST00000555402 DYNC2H1Q8NCM8 4307 aaKnown RBP0.46□□□□□ -2.34
VRK1-205ENST00000555402 LAMA5O15230 3695 aa0.45□□□□□ -2.34
VRK1-205ENST00000555402 CUBNO60494 3623 aa0.45□□□□□ -2.34
VRK1-205ENST00000555402 DNAH7Q8WXX0 4024 aa0.45□□□□□ -2.34
VRK1-205ENST00000555402 MUC5ACP98088 5654 aa0.45□□□□□ -2.34
VRK1-205ENST00000555402 COL7A1Q02388 2944 aa0.45□□□□□ -2.34
VRK1-205ENST00000555402 FSIP2Q5CZC0 6907 aa0.45□□□□□ -2.34
VRK1-205ENST00000555402 HUWE1Q7Z6Z7 4374 aaKnown RBP0.45□□□□□ -2.34
VRK1-205ENST00000555402 TACC2O95359 2948 aa0.44□□□□□ -2.34
VRK1-205ENST00000555402 LAMA1P25391 3075 aa0.44□□□□□ -2.34
VRK1-205ENST00000555402 SVEP1Q4LDE5 3571 aa0.44□□□□□ -2.34
VRK1-205ENST00000555402 MDN1Q9NU22 5596 aa0.44□□□□□ -2.34
VRK1-205ENST00000555402 SPRR2BP35325 72 aa0.44□□□□□ -2.34
VRK1-205ENST00000555402 RNF213Q63HN8 5207 aa0.44□□□□□ -2.34
VRK1-205ENST00000555402 FAT4Q6V0I7 4981 aa0.44□□□□□ -2.34
VRK1-205ENST00000555402 TRPM2O94759 1503 aa0.43□□□□□ -2.34
VRK1-205ENST00000555402 C9orf92A6NGG3 77 aa0.43□□□□□ -2.34
VRK1-205ENST00000555402 H3BNG1 76 aa0.43□□□□□ -2.34
VRK1-205ENST00000555402 DEFB124Q8NES8 71 aa0.43□□□□□ -2.34
VRK1-205ENST00000555402 FAT3Q8TDW7 4589 aa0.43□□□□□ -2.34
VRK1-205ENST00000555402 CMYA5Q8N3K9 4069 aa0.42□□□□□ -2.34
VRK1-205ENST00000555402 DNAH1Q9P2D7 4330 aa0.42□□□□□ -2.34
VRK1-205ENST00000555402 MYCBP2O75592 4640 aa0.41□□□□□ -2.34
VRK1-205ENST00000555402 PKHD1P08F94 4074 aa0.41□□□□□ -2.34
VRK1-205ENST00000555402 HMCN2Q8NDA2 5059 aa0.41□□□□□ -2.34
VRK1-205ENST00000555402 TRRAPQ9Y4A5 3859 aa0.4□□□□□ -2.35
VRK1-205ENST00000555402 PKHD1L1Q86WI1 4243 aa0.4□□□□□ -2.35
VRK1-205ENST00000555402 NDUFA1O15239 70 aa0.4□□□□□ -2.35
VRK1-205ENST00000555402 SSPOA2VEC9 5147 aa0.4□□□□□ -2.35
VRK1-205ENST00000555402 PKD1P98161 4303 aa0.4□□□□□ -2.35
VRK1-205ENST00000555402 DSTQ03001 7570 aaKnown RBP0.4□□□□□ -2.35
VRK1-205ENST00000555402 KMT2DO14686 5537 aa0.39□□□□□ -2.35
VRK1-205ENST00000555402 SACSQ9NZJ4 4579 aa0.39□□□□□ -2.35
VRK1-205ENST00000555402 MMP24-AS1A0A0U1RRL7 71 aa0.39□□□□□ -2.35
VRK1-205ENST00000555402 M0QY20 66 aa0.39□□□□□ -2.35
VRK1-205ENST00000555402 LPAP08519 4548 aa0.38□□□□□ -2.35
VRK1-205ENST00000555402 DNAH6Q9C0G6 4158 aa0.37□□□□□ -2.35
VRK1-205ENST00000555402 DNAH9Q9NYC9 4486 aa0.37□□□□□ -2.35
VRK1-205ENST00000555402 DEFB131AP59861 70 aa0.37□□□□□ -2.35
VRK1-205ENST00000555402 LRP1BQ9NZR2 4599 aa0.37□□□□□ -2.35
VRK1-205ENST00000555402 DNAH3Q8TD57 4116 aa0.36□□□□□ -2.35
VRK1-205ENST00000555402 HRNRQ86YZ3 2850 aaPredicted RBP0.36□□□□□ -2.35
VRK1-205ENST00000555402 HSPG2P98160 4391 aa0.36□□□□□ -2.35
VRK1-205ENST00000555402 SMR3BP02814 79 aaPredicted RBP0.36□□□□□ -2.35
VRK1-205ENST00000555402 LYSTQ99698 3801 aa0.36□□□□□ -2.35
VRK1-205ENST00000555402 DNAH10Q8IVF4 4471 aa0.36□□□□□ -2.35
VRK1-205ENST00000555402 DYNC1H1Q14204 4646 aaKnown RBP0.36□□□□□ -2.35
VRK1-205ENST00000555402 ANK3Q12955 4377 aaKnown RBP0.36□□□□□ -2.35
VRK1-205ENST00000555402 MUC12Q9UKN1 5478 aa0.35□□□□□ -2.35
VRK1-205ENST00000555402 DUOX1Q9NRD9 1551 aa0.35□□□□□ -2.35
VRK1-205ENST00000555402 PLECQ15149 4684 aaKnown RBP0.34□□□□□ -2.35
VRK1-205ENST00000555402 USH2AO75445 5202 aa0.33□□□□□ -2.36
VRK1-205ENST00000555402 VPS13BQ7Z7G8 4022 aa0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms