RNA–Protein interactions for RNA: ENST00000555379.1

LINC00641-201, long intergenic non-protein coding RNA 641, humanhuman

Gene LINC00641, Length 5,425 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00641-201ENST00000555379 NBPF19A0A087WUL8 3843 aa3.53□□□□□ -1.84
LINC00641-201ENST00000555379 PKD1L1Q8TDX9 2849 aa3.51□□□□□ -1.85
LINC00641-201ENST00000555379 SPRR2GQ9BYE4 73 aa3.51□□□□□ -1.85
LINC00641-201ENST00000555379 MT1HP80294 61 aa3.49□□□□□ -1.85
LINC00641-201ENST00000555379 DNAH11Q96DT5 4516 aa3.45□□□□□ -1.86
LINC00641-201ENST00000555379 ZNF469Q96JG9 3925 aaPredicted RBP3.45□□□□□ -1.86
LINC00641-201ENST00000555379 LORP23490 312 aaPredicted RBP3.44□□□□□ -1.86
LINC00641-201ENST00000555379 LCE3AQ5TA76 89 aa3.44□□□□□ -1.86
LINC00641-201ENST00000555379 MEGF8Q7Z7M0 2845 aa3.44□□□□□ -1.86
LINC00641-201ENST00000555379 MYCBP2O75592 4640 aa3.43□□□□□ -1.86
LINC00641-201ENST00000555379 FBN1P35555 2871 aaKnown RBP3.43□□□□□ -1.86
LINC00641-201ENST00000555379 MT2AP02795 61 aa3.42□□□□□ -1.86
LINC00641-201ENST00000555379 CUBNO60494 3623 aa3.42□□□□□ -1.86
LINC00641-201ENST00000555379 AKAP9Q99996 3911 aa3.4□□□□□ -1.87
LINC00641-201ENST00000555379 HERC1Q15751 4861 aa3.37□□□□□ -1.87
LINC00641-201ENST00000555379 DYNC1H1Q14204 4646 aaKnown RBP3.34□□□□□ -1.87
LINC00641-201ENST00000555379 SRRM2Q9UQ35 2752 aaKnown RBP3.33□□□□□ -1.88
LINC00641-201ENST00000555379 KRTAP19-8Q3LI54 63 aa3.33□□□□□ -1.88
LINC00641-201ENST00000555379 LRP1BQ9NZR2 4599 aa3.33□□□□□ -1.88
LINC00641-201ENST00000555379 KRTAP10-7P60409 375 aaPredicted RBP3.33□□□□□ -1.88
LINC00641-201ENST00000555379 KRTAP4-1Q9BYQ7 146 aa3.31□□□□□ -1.88
LINC00641-201ENST00000555379 DNAH9Q9NYC9 4486 aa3.3□□□□□ -1.88
LINC00641-201ENST00000555379 CRCT1Q9UGL9 99 aa3.29□□□□□ -1.88
LINC00641-201ENST00000555379 HSPG2P98160 4391 aa3.28□□□□□ -1.88
LINC00641-201ENST00000555379 KRTAP10-5P60370 271 aa3.27□□□□□ -1.89
LINC00641-201ENST00000555379 MT1FP04733 61 aa3.27□□□□□ -1.89
LINC00641-201ENST00000555379 PLECQ15149 4684 aaKnown RBP3.27□□□□□ -1.89
LINC00641-201ENST00000555379 DNAH6Q9C0G6 4158 aa3.24□□□□□ -1.89
LINC00641-201ENST00000555379 DNAH5Q8TE73 4624 aa3.23□□□□□ -1.89
LINC00641-201ENST00000555379 SPRR2FQ96RM1 72 aa3.22□□□□□ -1.89
LINC00641-201ENST00000555379 DNAH17Q9UFH2 4485 aa3.22□□□□□ -1.89
LINC00641-201ENST00000555379 VPS13DQ5THJ4 4388 aa3.22□□□□□ -1.89
LINC00641-201ENST00000555379 TRRAPQ9Y4A5 3859 aa3.19□□□□□ -1.9
LINC00641-201ENST00000555379 CMYA5Q8N3K9 4069 aa3.18□□□□□ -1.9
LINC00641-201ENST00000555379 DYNC2H1Q8NCM8 4307 aaKnown RBP3.17□□□□□ -1.9
LINC00641-201ENST00000555379 LCE3CQ5T5A8 94 aa3.16□□□□□ -1.9
LINC00641-201ENST00000555379 DNAH8Q96JB1 4490 aa3.16□□□□□ -1.9
LINC00641-201ENST00000555379 COL7A1Q02388 2944 aa3.15□□□□□ -1.9
LINC00641-201ENST00000555379 ANK2Q01484 3957 aa3.14□□□□□ -1.91
LINC00641-201ENST00000555379 SPRR5A0A1B0GTR4 108 aa3.14□□□□□ -1.91
LINC00641-201ENST00000555379 KRTAP19-5Q3LI72 72 aa3.13□□□□□ -1.91
LINC00641-201ENST00000555379 FAT2Q9NYQ8 4349 aa3.12□□□□□ -1.91
LINC00641-201ENST00000555379 LRP1Q07954 4544 aaKnown RBP3.12□□□□□ -1.91
LINC00641-201ENST00000555379 SPRR2EP22531 72 aa3.12□□□□□ -1.91
LINC00641-201ENST00000555379 SPRR2BP35325 72 aa3.12□□□□□ -1.91
LINC00641-201ENST00000555379 SPRR2AP35326 72 aa3.12□□□□□ -1.91
LINC00641-201ENST00000555379 DNAH3Q8TD57 4116 aa3.11□□□□□ -1.91
LINC00641-201ENST00000555379 SACSQ9NZJ4 4579 aa3.1□□□□□ -1.91
LINC00641-201ENST00000555379 MT1GP13640 62 aa3.09□□□□□ -1.92
LINC00641-201ENST00000555379 KRTAP19-1Q8IUB9 90 aa3.08□□□□□ -1.92
LINC00641-201ENST00000555379 APOBP04114 4563 aaKnown RBP3.08□□□□□ -1.92
LINC00641-201ENST00000555379 MT3P25713 68 aa3.07□□□□□ -1.92
LINC00641-201ENST00000555379 KRTAP12-4P60329 112 aa3.06□□□□□ -1.92
LINC00641-201ENST00000555379 SPRR2DP22532 72 aa3.06□□□□□ -1.92
LINC00641-201ENST00000555379 RYR2Q92736 4967 aa3.05□□□□□ -1.92
LINC00641-201ENST00000555379 KRTAP9-8Q9BYQ0 159 aa3.03□□□□□ -1.92
LINC00641-201ENST00000555379 BIRC6Q9NR09 4857 aa3.03□□□□□ -1.92
LINC00641-201ENST00000555379 KRTAP9-3Q9BYQ3 159 aa3.02□□□□□ -1.93
LINC00641-201ENST00000555379 MT1BP07438 61 aa3.01□□□□□ -1.93
LINC00641-201ENST00000555379 RYR1P21817 5038 aa3.01□□□□□ -1.93
LINC00641-201ENST00000555379 FAT1Q14517 4588 aa3.01□□□□□ -1.93
LINC00641-201ENST00000555379 MT1XP80297 61 aa3.01□□□□□ -1.93
LINC00641-201ENST00000555379 LYSTQ99698 3801 aa3□□□□□ -1.93
LINC00641-201ENST00000555379 FAT3Q8TDW7 4589 aa2.98□□□□□ -1.93
LINC00641-201ENST00000555379 DNHD1Q96M86 4753 aa2.97□□□□□ -1.93
LINC00641-201ENST00000555379 CSMD3Q7Z407 3707 aa2.96□□□□□ -1.94
LINC00641-201ENST00000555379 DNAH7Q8WXX0 4024 aa2.94□□□□□ -1.94
LINC00641-201ENST00000555379 KRTAP19-6Q3LI70 58 aa2.94□□□□□ -1.94
LINC00641-201ENST00000555379 PKHD1L1Q86WI1 4243 aa2.93□□□□□ -1.94
LINC00641-201ENST00000555379 PRKDCP78527 4128 aaKnown RBP2.93□□□□□ -1.94
LINC00641-201ENST00000555379 FRAS1Q86XX4 4008 aa2.93□□□□□ -1.94
LINC00641-201ENST00000555379 RYR3Q15413 4870 aa2.92□□□□□ -1.94
LINC00641-201ENST00000555379 KRTAP19-3Q7Z4W3 81 aa2.9□□□□□ -1.95
LINC00641-201ENST00000555379 PCLOQ9Y6V0 5065 aa2.89□□□□□ -1.95
LINC00641-201ENST00000555379 MT1LQ93083 61 aa2.88□□□□□ -1.95
LINC00641-201ENST00000555379 VPS13BQ7Z7G8 4022 aa2.88□□□□□ -1.95
LINC00641-201ENST00000555379 STARD9Q9P2P6 4700 aa2.87□□□□□ -1.95
LINC00641-201ENST00000555379 KMT2AQ03164 3969 aa2.85□□□□□ -1.95
LINC00641-201ENST00000555379 KRTAP17-1Q9BYP8 105 aa2.83□□□□□ -1.96
LINC00641-201ENST00000555379 HERC2O95714 4834 aa2.83□□□□□ -1.96
LINC00641-201ENST00000555379 PKD1P98161 4303 aa2.82□□□□□ -1.96
LINC00641-201ENST00000555379 LRP2P98164 4655 aa2.81□□□□□ -1.96
LINC00641-201ENST00000555379 KRTAP19-2Q3LHN2 52 aa2.81□□□□□ -1.96
LINC00641-201ENST00000555379 MT1EP04732 61 aa2.8□□□□□ -1.96
LINC00641-201ENST00000555379 KMT2CQ8NEZ4 4911 aaKnown RBP2.8□□□□□ -1.96
LINC00641-201ENST00000555379 KRTAP9-2Q9BYQ4 174 aa2.79□□□□□ -1.96
LINC00641-201ENST00000555379 HECTD4Q9Y4D8 3996 aa2.78□□□□□ -1.96
LINC00641-201ENST00000555379 LCE1AQ5T7P2 110 aa2.78□□□□□ -1.96
LINC00641-201ENST00000555379 KRTAP9-6A0A140TA67 174 aa2.77□□□□□ -1.97
LINC00641-201ENST00000555379 HYDINQ4G0P3 5121 aa2.77□□□□□ -1.97
LINC00641-201ENST00000555379 LCE3DQ9BYE3 92 aa2.75□□□□□ -1.97
LINC00641-201ENST00000555379 LCE3EQ5T5B0 92 aa2.74□□□□□ -1.97
LINC00641-201ENST00000555379 MUC17Q685J3 4493 aa2.74□□□□□ -1.97
LINC00641-201ENST00000555379 LCE3BQ5TA77 95 aa2.73□□□□□ -1.97
LINC00641-201ENST00000555379 KRTAP6-3Q3LI67 103 aa2.72□□□□□ -1.97
LINC00641-201ENST00000555379 MT1MQ8N339 61 aa2.71□□□□□ -1.98
LINC00641-201ENST00000555379 LCE5AQ5TCM9 118 aa2.71□□□□□ -1.98
LINC00641-201ENST00000555379 KIAA1109Q2LD37 5005 aa2.69□□□□□ -1.98
LINC00641-201ENST00000555379 PKHD1P08F94 4074 aa2.67□□□□□ -1.98
LINC00641-201ENST00000555379 KRTAP20-1Q3LI63 56 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms