RNA–Protein interactions for RNA: ENST00000553612.5

GTF2A1-203, Transcript of general transcription factor IIA subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2A1, Length 6,306 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-203ENST00000553612 CRCT1Q9UGL9 99 aa3.86□□□□□ -1.79
GTF2A1-203ENST00000553612 ANK2Q01484 3957 aa3.84□□□□□ -1.8
GTF2A1-203ENST00000553612 LCE3AQ5TA76 89 aa3.83□□□□□ -1.8
GTF2A1-203ENST00000553612 DNAH2Q9P225 4427 aa3.81□□□□□ -1.8
GTF2A1-203ENST00000553612 DNAH17Q9UFH2 4485 aa3.79□□□□□ -1.8
GTF2A1-203ENST00000553612 CMYA5Q8N3K9 4069 aa3.76□□□□□ -1.81
GTF2A1-203ENST00000553612 DNAH1Q9P2D7 4330 aa3.75□□□□□ -1.81
GTF2A1-203ENST00000553612 DNAH9Q9NYC9 4486 aa3.73□□□□□ -1.81
GTF2A1-203ENST00000553612 DNAH11Q96DT5 4516 aa3.66□□□□□ -1.82
GTF2A1-203ENST00000553612 KRTAP12-3P60328 96 aa3.66□□□□□ -1.82
GTF2A1-203ENST00000553612 KRTAP10-5P60370 271 aa3.65□□□□□ -1.83
GTF2A1-203ENST00000553612 SPRR5A0A1B0GTR4 108 aa3.63□□□□□ -1.83
GTF2A1-203ENST00000553612 PLECQ15149 4684 aaKnown RBP3.63□□□□□ -1.83
GTF2A1-203ENST00000553612 KMT2AQ03164 3969 aa3.62□□□□□ -1.83
GTF2A1-203ENST00000553612 DNAH7Q8WXX0 4024 aa3.61□□□□□ -1.83
GTF2A1-203ENST00000553612 APOBP04114 4563 aaKnown RBP3.61□□□□□ -1.83
GTF2A1-203ENST00000553612 KRTAP10-12P60413 245 aa3.61□□□□□ -1.83
GTF2A1-203ENST00000553612 VPS13BQ7Z7G8 4022 aa3.58□□□□□ -1.84
GTF2A1-203ENST00000553612 VPS13DQ5THJ4 4388 aa3.55□□□□□ -1.84
GTF2A1-203ENST00000553612 MYCBP2O75592 4640 aa3.55□□□□□ -1.84
GTF2A1-203ENST00000553612 DNAH6Q9C0G6 4158 aa3.54□□□□□ -1.84
GTF2A1-203ENST00000553612 HECTD4Q9Y4D8 3996 aa3.53□□□□□ -1.85
GTF2A1-203ENST00000553612 DNAH3Q8TD57 4116 aa3.51□□□□□ -1.85
GTF2A1-203ENST00000553612 FAT1Q14517 4588 aa3.5□□□□□ -1.85
GTF2A1-203ENST00000553612 LRP1BQ9NZR2 4599 aa3.48□□□□□ -1.85
GTF2A1-203ENST00000553612 STARD9Q9P2P6 4700 aa3.47□□□□□ -1.85
GTF2A1-203ENST00000553612 DNAH5Q8TE73 4624 aa3.43□□□□□ -1.86
GTF2A1-203ENST00000553612 SACSQ9NZJ4 4579 aa3.42□□□□□ -1.86
GTF2A1-203ENST00000553612 LRP1Q07954 4544 aaKnown RBP3.4□□□□□ -1.86
GTF2A1-203ENST00000553612 FAT3Q8TDW7 4589 aa3.37□□□□□ -1.87
GTF2A1-203ENST00000553612 KRTAP12-4P60329 112 aa3.37□□□□□ -1.87
GTF2A1-203ENST00000553612 DYNC2H1Q8NCM8 4307 aaKnown RBP3.36□□□□□ -1.87
GTF2A1-203ENST00000553612 MT1HL1P0DM35 61 aa3.35□□□□□ -1.87
GTF2A1-203ENST00000553612 KRTAP10-4P60372 401 aaPredicted RBP3.34□□□□□ -1.87
GTF2A1-203ENST00000553612 KRTAP4-1Q9BYQ7 146 aa3.33□□□□□ -1.88
GTF2A1-203ENST00000553612 DYNC1H1Q14204 4646 aaKnown RBP3.28□□□□□ -1.88
GTF2A1-203ENST00000553612 KRTAP19-5Q3LI72 72 aa3.28□□□□□ -1.89
GTF2A1-203ENST00000553612 KRTAP4-5Q9BYR2 181 aa3.28□□□□□ -1.89
GTF2A1-203ENST00000553612 PRKDCP78527 4128 aaKnown RBP3.27□□□□□ -1.89
GTF2A1-203ENST00000553612 LCE3CQ5T5A8 94 aa3.27□□□□□ -1.89
GTF2A1-203ENST00000553612 LPAP08519 4548 aa3.24□□□□□ -1.89
GTF2A1-203ENST00000553612 FAT2Q9NYQ8 4349 aa3.23□□□□□ -1.89
GTF2A1-203ENST00000553612 HSPG2P98160 4391 aa3.22□□□□□ -1.89
GTF2A1-203ENST00000553612 KRTAP8-1Q8IUC2 63 aa3.21□□□□□ -1.9
GTF2A1-203ENST00000553612 KRTAP10-7P60409 375 aaPredicted RBP3.18□□□□□ -1.9
GTF2A1-203ENST00000553612 PKHD1P08F94 4074 aa3.17□□□□□ -1.9
GTF2A1-203ENST00000553612 LRP2P98164 4655 aa3.16□□□□□ -1.9
GTF2A1-203ENST00000553612 LCE3BQ5TA77 95 aa3.15□□□□□ -1.9
GTF2A1-203ENST00000553612 KRTAP4-7Q9BYR0 210 aa3.14□□□□□ -1.91
GTF2A1-203ENST00000553612 LCE2CQ5TA81 110 aa3.14□□□□□ -1.91
GTF2A1-203ENST00000553612 PKD1P98161 4303 aa3.11□□□□□ -1.91
GTF2A1-203ENST00000553612 PRM1P04553 51 aa3.09□□□□□ -1.91
GTF2A1-203ENST00000553612 MT1GP13640 62 aa3.04□□□□□ -1.92
GTF2A1-203ENST00000553612 RYR1P21817 5038 aa3.03□□□□□ -1.92
GTF2A1-203ENST00000553612 MT1FP04733 61 aa3.03□□□□□ -1.92
GTF2A1-203ENST00000553612 KRTAP4-8A0A0G2JLE6 195 aa3.02□□□□□ -1.93
GTF2A1-203ENST00000553612 KRTAP4-8Q9BYQ9 185 aa3.02□□□□□ -1.93
GTF2A1-203ENST00000553612 HYDINQ4G0P3 5121 aa3.02□□□□□ -1.93
GTF2A1-203ENST00000553612 SPRR2GQ9BYE4 73 aa3.02□□□□□ -1.93
GTF2A1-203ENST00000553612 TNXBP22105 4242 aa2.99□□□□□ -1.93
GTF2A1-203ENST00000553612 MT2AP02795 61 aa2.99□□□□□ -1.93
GTF2A1-203ENST00000553612 KMT2CQ8NEZ4 4911 aaKnown RBP2.98□□□□□ -1.93
GTF2A1-203ENST00000553612 PKHD1L1Q86WI1 4243 aa2.98□□□□□ -1.93
GTF2A1-203ENST00000553612 LCE1AQ5T7P2 110 aa2.97□□□□□ -1.93
GTF2A1-203ENST00000553612 KRTAP19-1Q8IUB9 90 aa2.96□□□□□ -1.94
GTF2A1-203ENST00000553612 LCE1EQ5T753 118 aa2.96□□□□□ -1.94
GTF2A1-203ENST00000553612 MT1XP80297 61 aa2.94□□□□□ -1.94
GTF2A1-203ENST00000553612 LOC100996750A0A140TA64 210 aa2.94□□□□□ -1.94
GTF2A1-203ENST00000553612 FLGP20930 4061 aaPredicted RBP2.94□□□□□ -1.94
GTF2A1-203ENST00000553612 MT1HP80294 61 aa2.94□□□□□ -1.94
GTF2A1-203ENST00000553612 DNHD1Q96M86 4753 aa2.93□□□□□ -1.94
GTF2A1-203ENST00000553612 KRTAP4-9Q9BYQ8 210 aa2.93□□□□□ -1.94
GTF2A1-203ENST00000553612 LCE2AQ5TA79 106 aaPredicted RBP2.93□□□□□ -1.94
GTF2A1-203ENST00000553612 KRTAP17-1Q9BYP8 105 aa2.91□□□□□ -1.94
GTF2A1-203ENST00000553612 OBSCNQ5VST9 7968 aa2.87□□□□□ -1.95
GTF2A1-203ENST00000553612 LCE3DQ9BYE3 92 aa2.87□□□□□ -1.95
GTF2A1-203ENST00000553612 KRTAP2-3P0C7H8 128 aa2.86□□□□□ -1.95
GTF2A1-203ENST00000553612 KRTAP2-4Q9BYR9 128 aa2.86□□□□□ -1.95
GTF2A1-203ENST00000553612 KRTAP2-1Q9BYU5 128 aa2.86□□□□□ -1.95
GTF2A1-203ENST00000553612 LCE3EQ5T5B0 92 aa2.85□□□□□ -1.95
GTF2A1-203ENST00000553612 KRTAP9-7A8MTY7 169 aa2.83□□□□□ -1.96
GTF2A1-203ENST00000553612 LCE2BO14633 110 aa2.83□□□□□ -1.96
GTF2A1-203ENST00000553612 KRTAP4-3Q9BYR4 195 aa2.82□□□□□ -1.96
GTF2A1-203ENST00000553612 SYNE1Q8NF91 8797 aaKnown RBP2.82□□□□□ -1.96
GTF2A1-203ENST00000553612 KRTAP9-6A8MVA2 160 aa2.8□□□□□ -1.96
GTF2A1-203ENST00000553612 MT1BP07438 61 aa2.79□□□□□ -1.96
GTF2A1-203ENST00000553612 LCE1DQ5T752 114 aa2.78□□□□□ -1.96
GTF2A1-203ENST00000553612 SPRR2FQ96RM1 72 aa2.76□□□□□ -1.97
GTF2A1-203ENST00000553612 MUC17Q685J3 4493 aa2.74□□□□□ -1.97
GTF2A1-203ENST00000553612 KRTAP9-6A0A140TA67 174 aa2.74□□□□□ -1.97
GTF2A1-203ENST00000553612 RYR3Q15413 4870 aa2.73□□□□□ -1.97
GTF2A1-203ENST00000553612 MUC2Q02817 5179 aa2.71□□□□□ -1.97
GTF2A1-203ENST00000553612 KRTAP6-3Q3LI67 103 aa2.71□□□□□ -1.98
GTF2A1-203ENST00000553612 KMT2DO14686 5537 aa2.71□□□□□ -1.98
GTF2A1-203ENST00000553612 LCE1FQ5T754 118 aa2.7□□□□□ -1.98
GTF2A1-203ENST00000553612 DSTQ03001 7570 aaKnown RBP2.69□□□□□ -1.98
GTF2A1-203ENST00000553612 SYNE2Q8WXH0 6885 aaKnown RBP2.67□□□□□ -1.98
GTF2A1-203ENST00000553612 KIAA1109Q2LD37 5005 aa2.67□□□□□ -1.98
GTF2A1-203ENST00000553612 KRTAP19-8Q3LI54 63 aa2.67□□□□□ -1.98
GTF2A1-203ENST00000553612 RYR2Q92736 4967 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms