RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 MMP24-AS1A0A0U1RRL7 71 aa-0.31□□□□□ -2.46
SCFD1-208ENST00000553278 MT2AP02795 61 aa-0.31□□□□□ -2.46
SCFD1-208ENST00000553278 MT1BP07438 61 aa-0.31□□□□□ -2.46
SCFD1-208ENST00000553278 KRTAP20-1Q3LI63 56 aa-0.31□□□□□ -2.46
SCFD1-208ENST00000553278 MT1LQ93083 61 aa-0.31□□□□□ -2.46
SCFD1-208ENST00000553278 ITPR1Q14643 2758 aa-0.31□□□□□ -2.46
SCFD1-208ENST00000553278 PKHD1L1Q86WI1 4243 aa-0.31□□□□□ -2.46
SCFD1-208ENST00000553278 COL6A5A8TX70 2615 aa-0.32□□□□□ -2.46
SCFD1-208ENST00000553278 A0A0C4DFX4 3053 aa-0.32□□□□□ -2.46
SCFD1-208ENST00000553278 LINC01546A6NGU7 62 aa-0.32□□□□□ -2.46
SCFD1-208ENST00000553278 SMR3BP02814 79 aaPredicted RBP-0.32□□□□□ -2.46
SCFD1-208ENST00000553278 MT1GP13640 62 aa-0.32□□□□□ -2.46
SCFD1-208ENST00000553278 LINC00308Q8TCZ7 52 aa-0.32□□□□□ -2.46
SCFD1-208ENST00000553278 RYR2Q92736 4967 aa-0.32□□□□□ -2.46
SCFD1-208ENST00000553278 CEP295Q9C0D2 2601 aa-0.32□□□□□ -2.46
SCFD1-208ENST00000553278 FRYQ5TBA9 3013 aa-0.32□□□□□ -2.46
SCFD1-208ENST00000553278 DNAH3Q8TD57 4116 aa-0.32□□□□□ -2.46
SCFD1-208ENST00000553278 EYSQ5T1H1 3165 aa-0.33□□□□□ -2.46
SCFD1-208ENST00000553278 CHD7Q9P2D1 2997 aa-0.33□□□□□ -2.46
SCFD1-208ENST00000553278 MYO9AB2RTY4 2548 aa-0.33□□□□□ -2.46
SCFD1-208ENST00000553278 KRTAP8-1Q8IUC2 63 aa-0.33□□□□□ -2.46
SCFD1-208ENST00000553278 MUC17Q685J3 4493 aa-0.33□□□□□ -2.46
SCFD1-208ENST00000553278 CFAP46Q8IYW2 2715 aa-0.33□□□□□ -2.46
SCFD1-208ENST00000553278 RNF213Q63HN8 5207 aa-0.33□□□□□ -2.46
SCFD1-208ENST00000553278 TLN1Q9Y490 2541 aaKnown RBP-0.34□□□□□ -2.46
SCFD1-208ENST00000553278 TLN2Q9Y4G6 2542 aa-0.34□□□□□ -2.46
SCFD1-208ENST00000553278 DEFB4AO15263 64 aa-0.34□□□□□ -2.46
SCFD1-208ENST00000553278 SPART-AS1P0CW21 52 aa-0.34□□□□□ -2.46
SCFD1-208ENST00000553278 C5orf42Q9H799 3197 aa-0.34□□□□□ -2.46
SCFD1-208ENST00000553278 LRBAP50851 2863 aa-0.34□□□□□ -2.46
SCFD1-208ENST00000553278 ITPR2Q14571 2701 aa-0.35□□□□□ -2.46
SCFD1-208ENST00000553278 ANK3Q12955 4377 aaKnown RBP-0.35□□□□□ -2.46
SCFD1-208ENST00000553278 RELNP78509 3460 aa-0.35□□□□□ -2.47
SCFD1-208ENST00000553278 H0YGX0 51 aa-0.35□□□□□ -2.47
SCFD1-208ENST00000553278 M0QZ58 72 aa-0.35□□□□□ -2.47
SCFD1-208ENST00000553278 RPS29P62273 56 aaKnown RBP-0.35□□□□□ -2.47
SCFD1-208ENST00000553278 SPTAN1Q13813 2472 aaKnown RBP-0.35□□□□□ -2.47
SCFD1-208ENST00000553278 PLECQ15149 4684 aaKnown RBP-0.35□□□□□ -2.47
SCFD1-208ENST00000553278 SRCAPQ6ZRS2 3230 aa-0.35□□□□□ -2.47
SCFD1-208ENST00000553278 RANBP2P49792 3224 aaKnown RBP-0.36□□□□□ -2.47
SCFD1-208ENST00000553278 A8MTW9 85 aa-0.36□□□□□ -2.47
SCFD1-208ENST00000553278 M0QY20 66 aa-0.36□□□□□ -2.47
SCFD1-208ENST00000553278 DEFB136Q30KP8 78 aa-0.36□□□□□ -2.47
SCFD1-208ENST00000553278 KRTAP19-6Q3LI70 58 aa-0.36□□□□□ -2.47
SCFD1-208ENST00000553278 ABRACLQ9P1F3 81 aa-0.36□□□□□ -2.47
SCFD1-208ENST00000553278 VPS13DQ5THJ4 4388 aa-0.36□□□□□ -2.47
SCFD1-208ENST00000553278 DNHD1Q96M86 4753 aa-0.37□□□□□ -2.47
SCFD1-208ENST00000553278 DMXL2Q8TDJ6 3036 aa-0.37□□□□□ -2.47
SCFD1-208ENST00000553278 CSMD1Q96PZ7 3565 aa-0.37□□□□□ -2.47
SCFD1-208ENST00000553278 MT1FP04733 61 aa-0.37□□□□□ -2.47
SCFD1-208ENST00000553278 CMYA5Q8N3K9 4069 aa-0.37□□□□□ -2.47
SCFD1-208ENST00000553278 DNAH2Q9P225 4427 aa-0.37□□□□□ -2.47
SCFD1-208ENST00000553278 SACSQ9NZJ4 4579 aa-0.38□□□□□ -2.47
SCFD1-208ENST00000553278 LEAP2Q969E1 77 aa-0.38□□□□□ -2.47
SCFD1-208ENST00000553278 A0A1B0GUL6 1792 aa-0.38□□□□□ -2.47
SCFD1-208ENST00000553278 ADGRG4Q8IZF6 3080 aa-0.39□□□□□ -2.47
SCFD1-208ENST00000553278 TRRAPQ9Y4A5 3859 aa-0.39□□□□□ -2.47
SCFD1-208ENST00000553278 DNAH1Q9P2D7 4330 aa-0.39□□□□□ -2.47
SCFD1-208ENST00000553278 ATMQ13315 3056 aa-0.39□□□□□ -2.47
SCFD1-208ENST00000553278 BOD1L1Q8NFC6 3051 aa-0.39□□□□□ -2.47
SCFD1-208ENST00000553278 DNAH7Q8WXX0 4024 aa-0.39□□□□□ -2.47
SCFD1-208ENST00000553278 MGAQ8IWI9 3026 aa-0.4□□□□□ -2.47
SCFD1-208ENST00000553278 ABCA13Q86UQ4 5058 aa-0.4□□□□□ -2.47
SCFD1-208ENST00000553278 SMG1Q96Q15 3661 aaKnown RBP-0.4□□□□□ -2.47
SCFD1-208ENST00000553278 FREM2Q5SZK8 3169 aa-0.41□□□□□ -2.47
SCFD1-208ENST00000553278 SMIM27A0A1W2PRY6 76 aa-0.41□□□□□ -2.48
SCFD1-208ENST00000553278 DNAH11Q96DT5 4516 aa-0.41□□□□□ -2.48
SCFD1-208ENST00000553278 PRUNE2Q8WUY3 3088 aa-0.41□□□□□ -2.48
SCFD1-208ENST00000553278 SPENQ96T58 3664 aaKnown RBP-0.42□□□□□ -2.48
SCFD1-208ENST00000553278 EFCAB6Q5THR3 1501 aa-0.42□□□□□ -2.48
SCFD1-208ENST00000553278 SYCP2Q9BX26 1530 aa-0.42□□□□□ -2.48
SCFD1-208ENST00000553278 TTTY10Q9BZA0 68 aa-0.42□□□□□ -2.48
SCFD1-208ENST00000553278 KAAG1Q9UBP8 84 aa-0.42□□□□□ -2.48
SCFD1-208ENST00000553278 CSMD2Q7Z408 3487 aa-0.42□□□□□ -2.48
SCFD1-208ENST00000553278 PREX2Q70Z35 1606 aa-0.42□□□□□ -2.48
SCFD1-208ENST00000553278 APOBP04114 4563 aaKnown RBP-0.43□□□□□ -2.48
SCFD1-208ENST00000553278 WFDC10BQ8IUB3 73 aa-0.43□□□□□ -2.48
SCFD1-208ENST00000553278 DYNC1H1Q14204 4646 aaKnown RBP-0.43□□□□□ -2.48
SCFD1-208ENST00000553278 SPTBN5Q9NRC6 3674 aaKnown RBP-0.43□□□□□ -2.48
SCFD1-208ENST00000553278 CENPEQ02224 2701 aa-0.44□□□□□ -2.48
SCFD1-208ENST00000553278 CFAP54Q96N23 3096 aa-0.44□□□□□ -2.48
SCFD1-208ENST00000553278 POLR2KP53803 58 aaKnown RBP-0.44□□□□□ -2.48
SCFD1-208ENST00000553278 MROH2AA6NES4 1674 aa-0.44□□□□□ -2.48
SCFD1-208ENST00000553278 DNAH8Q96JB1 4490 aa-0.44□□□□□ -2.48
SCFD1-208ENST00000553278 KIF21BO75037 1637 aa-0.45□□□□□ -2.48
SCFD1-208ENST00000553278 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.45□□□□□ -2.48
SCFD1-208ENST00000553278 ZFHX4Q86UP3 3567 aa-0.45□□□□□ -2.48
SCFD1-208ENST00000553278 PLNP26678 52 aa-0.45□□□□□ -2.48
SCFD1-208ENST00000553278 DEFB131AP59861 70 aa-0.45□□□□□ -2.48
SCFD1-208ENST00000553278 AGLP35573 1532 aa-0.45□□□□□ -2.48
SCFD1-208ENST00000553278 MYO15AQ9UKN7 3530 aa-0.45□□□□□ -2.48
SCFD1-208ENST00000553278 CEP350Q5VT06 3117 aa-0.45□□□□□ -2.48
SCFD1-208ENST00000553278 CRYBG3Q68DQ2 2970 aa-0.45□□□□□ -2.48
SCFD1-208ENST00000553278 ADCY10Q96PN6 1610 aa-0.46□□□□□ -2.48
SCFD1-208ENST00000553278 SPEGQ15772 3267 aa-0.46□□□□□ -2.48
SCFD1-208ENST00000553278 CD52P31358 61 aa-0.46□□□□□ -2.48
SCFD1-208ENST00000553278 FAM208AQ9UK61 1670 aaKnown RBP-0.46□□□□□ -2.48
SCFD1-208ENST00000553278 CEP250Q9BV73 2442 aa-0.47□□□□□ -2.48
SCFD1-208ENST00000553278 DNAH5Q8TE73 4624 aa-0.47□□□□□ -2.48
SCFD1-208ENST00000553278 DEFB133Q30KQ1 61 aa-0.47□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 997.4 ms