RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 PKHD1L1Q86WI1 4243 aa4.65□□□□□ -1.66
VPS13D-212ENST00000543766 PKD1P98161 4303 aa4.65□□□□□ -1.66
VPS13D-212ENST00000543766 DNAH2Q9P225 4427 aa4.64□□□□□ -1.67
VPS13D-212ENST00000543766 PLECQ15149 4684 aaKnown RBP4.63□□□□□ -1.67
VPS13D-212ENST00000543766 Q6ZRN7 208 aaPredicted RBP4.63□□□□□ -1.67
VPS13D-212ENST00000543766 ANAPC11Q9NYG5 84 aa4.61□□□□□ -1.67
VPS13D-212ENST00000543766 KRTAP1-5Q9BYS1 174 aa4.61□□□□□ -1.67
VPS13D-212ENST00000543766 BIRC6Q9NR09 4857 aa4.6□□□□□ -1.67
VPS13D-212ENST00000543766 KMT2AQ03164 3969 aa4.59□□□□□ -1.67
VPS13D-212ENST00000543766 VPS13BQ7Z7G8 4022 aa4.59□□□□□ -1.67
VPS13D-212ENST00000543766 EPPK1P58107 5090 aaKnown RBP4.58□□□□□ -1.68
VPS13D-212ENST00000543766 DYNC1H1Q14204 4646 aaKnown RBP4.57□□□□□ -1.68
VPS13D-212ENST00000543766 HERC2O95714 4834 aa4.56□□□□□ -1.68
VPS13D-212ENST00000543766 PKHD1P08F94 4074 aa4.55□□□□□ -1.68
VPS13D-212ENST00000543766 DNAH11Q96DT5 4516 aa4.55□□□□□ -1.68
VPS13D-212ENST00000543766 S4R3F8 94 aa4.53□□□□□ -1.68
VPS13D-212ENST00000543766 FAT3Q8TDW7 4589 aa4.53□□□□□ -1.68
VPS13D-212ENST00000543766 XP32Q5T750 250 aa4.51□□□□□ -1.69
VPS13D-212ENST00000543766 INE1O15225 51 aa4.5□□□□□ -1.69
VPS13D-212ENST00000543766 PP632Q6XCG6 107 aa4.46□□□□□ -1.7
VPS13D-212ENST00000543766 KIAA1109Q2LD37 5005 aa4.42□□□□□ -1.7
VPS13D-212ENST00000543766 KRTAP3-1Q9BYR8 98 aa4.41□□□□□ -1.7
VPS13D-212ENST00000543766 HSPG2P98160 4391 aa4.36□□□□□ -1.71
VPS13D-212ENST00000543766 RYR1P21817 5038 aa4.36□□□□□ -1.71
VPS13D-212ENST00000543766 KRTAP12-2P59991 146 aa4.36□□□□□ -1.71
VPS13D-212ENST00000543766 DNAH5Q8TE73 4624 aa4.36□□□□□ -1.71
VPS13D-212ENST00000543766 PCLOQ9Y6V0 5065 aa4.36□□□□□ -1.71
VPS13D-212ENST00000543766 APOBP04114 4563 aaKnown RBP4.35□□□□□ -1.71
VPS13D-212ENST00000543766 ABCA13Q86UQ4 5058 aa4.33□□□□□ -1.72
VPS13D-212ENST00000543766 SMR3BP02814 79 aaPredicted RBP4.33□□□□□ -1.72
VPS13D-212ENST00000543766 KRTAP13-4Q3LI77 160 aa4.33□□□□□ -1.72
VPS13D-212ENST00000543766 KRTAP13-2Q52LG2 175 aa4.31□□□□□ -1.72
VPS13D-212ENST00000543766 KRTAP10-6P60371 365 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-212ENST00000543766 KRTAP10-2P60368 255 aa4.29□□□□□ -1.72
VPS13D-212ENST00000543766 LRP1BQ9NZR2 4599 aa4.26□□□□□ -1.73
VPS13D-212ENST00000543766 FAT1Q14517 4588 aa4.26□□□□□ -1.73
VPS13D-212ENST00000543766 KRTAP4-5Q9BYR2 181 aa4.25□□□□□ -1.73
VPS13D-212ENST00000543766 KRTAP10-1P60331 282 aa4.22□□□□□ -1.73
VPS13D-212ENST00000543766 KRTAP17-1Q9BYP8 105 aa4.21□□□□□ -1.74
VPS13D-212ENST00000543766 MYCBP2O75592 4640 aa4.2□□□□□ -1.74
VPS13D-212ENST00000543766 KRTAP1-4P0C5Y4 121 aa4.2□□□□□ -1.74
VPS13D-212ENST00000543766 KRTAP12-1P59990 96 aa4.19□□□□□ -1.74
VPS13D-212ENST00000543766 TNXBP22105 4242 aa4.18□□□□□ -1.74
VPS13D-212ENST00000543766 HERC1Q15751 4861 aa4.17□□□□□ -1.74
VPS13D-212ENST00000543766 A0A1B0GVY2 172 aa4.17□□□□□ -1.74
VPS13D-212ENST00000543766 C9orf92A6NGG3 77 aa4.16□□□□□ -1.74
VPS13D-212ENST00000543766 RPS29P62273 56 aaKnown RBP4.15□□□□□ -1.74
VPS13D-212ENST00000543766 Q5VSD8 79 aa4.12□□□□□ -1.75
VPS13D-212ENST00000543766 LRP1Q07954 4544 aaKnown RBP4.09□□□□□ -1.76
VPS13D-212ENST00000543766 KRTAP10-4P60372 401 aaPredicted RBP4.09□□□□□ -1.76
VPS13D-212ENST00000543766 UBR4Q5T4S7 5183 aa4.01□□□□□ -1.77
VPS13D-212ENST00000543766 HMCN2Q8NDA2 5059 aa4.01□□□□□ -1.77
VPS13D-212ENST00000543766 LPAP08519 4548 aa3.99□□□□□ -1.77
VPS13D-212ENST00000543766 RNF213Q63HN8 5207 aa3.98□□□□□ -1.77
VPS13D-212ENST00000543766 M0QZ58 72 aa3.98□□□□□ -1.77
VPS13D-212ENST00000543766 MUC17Q685J3 4493 aa3.97□□□□□ -1.77
VPS13D-212ENST00000543766 LRP2P98164 4655 aa3.93□□□□□ -1.78
VPS13D-212ENST00000543766 SPRR5A0A1B0GTR4 108 aa3.89□□□□□ -1.79
VPS13D-212ENST00000543766 LCE4AQ5TA78 99 aa3.87□□□□□ -1.79
VPS13D-212ENST00000543766 MUC2Q02817 5179 aa3.86□□□□□ -1.79
VPS13D-212ENST00000543766 MT1HL1P0DM35 61 aa3.79□□□□□ -1.8
VPS13D-212ENST00000543766 TNP1P09430 55 aa3.75□□□□□ -1.81
VPS13D-212ENST00000543766 FSIP2Q5CZC0 6907 aa3.71□□□□□ -1.82
VPS13D-212ENST00000543766 KRTAP9-4Q9BYQ2 154 aa3.69□□□□□ -1.82
VPS13D-212ENST00000543766 FAT4Q6V0I7 4981 aa3.68□□□□□ -1.82
VPS13D-212ENST00000543766 FLGP20930 4061 aaPredicted RBP3.65□□□□□ -1.83
VPS13D-212ENST00000543766 KRTAP9-9Q9BYP9 154 aa3.64□□□□□ -1.83
VPS13D-212ENST00000543766 KRTAP9-6A0A140TA67 174 aa3.64□□□□□ -1.83
VPS13D-212ENST00000543766 KRTAP9-7A8MTY7 169 aa3.64□□□□□ -1.83
VPS13D-212ENST00000543766 LCE5AQ5TCM9 118 aa3.57□□□□□ -1.84
VPS13D-212ENST00000543766 KRTAP10-10P60014 251 aa3.54□□□□□ -1.84
VPS13D-212ENST00000543766 LCE1EQ5T753 118 aa3.5□□□□□ -1.85
VPS13D-212ENST00000543766 KRTAP19-4Q3LI73 84 aa3.49□□□□□ -1.85
VPS13D-212ENST00000543766 KRTAP19-2Q3LHN2 52 aa3.48□□□□□ -1.85
VPS13D-212ENST00000543766 M0R2T5 61 aa3.46□□□□□ -1.86
VPS13D-212ENST00000543766 LCE1AQ5T7P2 110 aa3.45□□□□□ -1.86
VPS13D-212ENST00000543766 KRTAP4-1Q9BYQ7 146 aa3.45□□□□□ -1.86
VPS13D-212ENST00000543766 LCE3CQ5T5A8 94 aa3.45□□□□□ -1.86
VPS13D-212ENST00000543766 KRTAP2-2Q9BYT5 123 aa3.43□□□□□ -1.86
VPS13D-212ENST00000543766 LCE1FQ5T754 118 aa3.41□□□□□ -1.86
VPS13D-212ENST00000543766 USH2AO75445 5202 aa3.34□□□□□ -1.87
VPS13D-212ENST00000543766 KRTAP19-1Q8IUB9 90 aa3.34□□□□□ -1.88
VPS13D-212ENST00000543766 KRTAP9-2Q9BYQ4 174 aa3.3□□□□□ -1.88
VPS13D-212ENST00000543766 KRTAP10-5P60370 271 aa3.29□□□□□ -1.88
VPS13D-212ENST00000543766 LCE3AQ5TA76 89 aa3.28□□□□□ -1.88
VPS13D-212ENST00000543766 LCE1DQ5T752 114 aa3.27□□□□□ -1.89
VPS13D-212ENST00000543766 KRTAP10-12P60413 245 aa3.27□□□□□ -1.89
VPS13D-212ENST00000543766 KRTAP8-1Q8IUC2 63 aa3.27□□□□□ -1.89
VPS13D-212ENST00000543766 KRTAP9-3Q9BYQ3 159 aa3.24□□□□□ -1.89
VPS13D-212ENST00000543766 MT1HP80294 61 aa3.24□□□□□ -1.89
VPS13D-212ENST00000543766 KRTAP6-3Q3LI67 103 aa3.23□□□□□ -1.89
VPS13D-212ENST00000543766 LCE3EQ5T5B0 92 aa3.21□□□□□ -1.9
VPS13D-212ENST00000543766 SYNE1Q8NF91 8797 aaKnown RBP3.2□□□□□ -1.9
VPS13D-212ENST00000543766 LCE3BQ5TA77 95 aa3.2□□□□□ -1.9
VPS13D-212ENST00000543766 OBSCNQ5VST9 7968 aa3.19□□□□□ -1.9
VPS13D-212ENST00000543766 KRTAP12-4P60329 112 aa3.18□□□□□ -1.9
VPS13D-212ENST00000543766 SPRR2GQ9BYE4 73 aa3.18□□□□□ -1.9
VPS13D-212ENST00000543766 MUC19Q7Z5P9 8384 aa3.17□□□□□ -1.9
VPS13D-212ENST00000543766 KMT2DO14686 5537 aa3.16□□□□□ -1.9
VPS13D-212ENST00000543766 CRCT1Q9UGL9 99 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms