RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 CMYA5Q8N3K9 4069 aa8□□□□□ -1.13
VARS2-212ENST00000542001 DNAH17Q9UFH2 4485 aa8□□□□□ -1.13
VARS2-212ENST00000542001 TPRXLQ17RH7 258 aa8□□□□□ -1.13
VARS2-212ENST00000542001 KRTAP10-4P60372 401 aaPredicted RBP7.98□□□□□ -1.13
VARS2-212ENST00000542001 KRTAP12-2P59991 146 aa7.98□□□□□ -1.13
VARS2-212ENST00000542001 DNAH6Q9C0G6 4158 aa7.97□□□□□ -1.13
VARS2-212ENST00000542001 DYNC1H1Q14204 4646 aaKnown RBP7.94□□□□□ -1.14
VARS2-212ENST00000542001 KRTAP10-6P60371 365 aaPredicted RBP7.92□□□□□ -1.14
VARS2-212ENST00000542001 A0A0A0MQY5 61 aa7.91□□□□□ -1.14
VARS2-212ENST00000542001 KRTAP4-5Q9BYR2 181 aa7.89□□□□□ -1.15
VARS2-212ENST00000542001 DNAH3Q8TD57 4116 aa7.88□□□□□ -1.15
VARS2-212ENST00000542001 VPS13BQ7Z7G8 4022 aa7.87□□□□□ -1.15
VARS2-212ENST00000542001 MT1HL1P0DM35 61 aa7.86□□□□□ -1.15
VARS2-212ENST00000542001 PLAC4Q8WY50 150 aa7.86□□□□□ -1.15
VARS2-212ENST00000542001 FAT3Q8TDW7 4589 aa7.84□□□□□ -1.16
VARS2-212ENST00000542001 KRTAP3-3Q9BYR6 98 aa7.82□□□□□ -1.16
VARS2-212ENST00000542001 KIAA1109Q2LD37 5005 aa7.82□□□□□ -1.16
VARS2-212ENST00000542001 KRTAP12-1P59990 96 aa7.8□□□□□ -1.16
VARS2-212ENST00000542001 RYR1P21817 5038 aa7.8□□□□□ -1.16
VARS2-212ENST00000542001 LRP1Q07954 4544 aaKnown RBP7.79□□□□□ -1.16
VARS2-212ENST00000542001 HECTD4Q9Y4D8 3996 aa7.77□□□□□ -1.17
VARS2-212ENST00000542001 HYDINQ4G0P3 5121 aa7.77□□□□□ -1.17
VARS2-212ENST00000542001 KRTAP3-2Q9BYR7 98 aa7.74□□□□□ -1.17
VARS2-212ENST00000542001 DYNC2H1Q8NCM8 4307 aaKnown RBP7.73□□□□□ -1.17
VARS2-212ENST00000542001 SACSQ9NZJ4 4579 aa7.73□□□□□ -1.17
VARS2-212ENST00000542001 PKHD1P08F94 4074 aa7.71□□□□□ -1.17
VARS2-212ENST00000542001 TNP1P09430 55 aa7.68□□□□□ -1.18
VARS2-212ENST00000542001 APOBP04114 4563 aaKnown RBP7.63□□□□□ -1.19
VARS2-212ENST00000542001 KRTAP10-10P60014 251 aa7.61□□□□□ -1.19
VARS2-212ENST00000542001 RYR3Q15413 4870 aa7.59□□□□□ -1.19
VARS2-212ENST00000542001 ALMS1Q8TCU4 4167 aa7.58□□□□□ -1.2
VARS2-212ENST00000542001 FAT2Q9NYQ8 4349 aa7.53□□□□□ -1.2
VARS2-212ENST00000542001 LORP23490 312 aaPredicted RBP7.5□□□□□ -1.21
VARS2-212ENST00000542001 KRTAP17-1Q9BYP8 105 aa7.48□□□□□ -1.21
VARS2-212ENST00000542001 KMT2CQ8NEZ4 4911 aaKnown RBP7.45□□□□□ -1.22
VARS2-212ENST00000542001 LRP2P98164 4655 aa7.42□□□□□ -1.22
VARS2-212ENST00000542001 KRTAP15-1Q3LI76 137 aa7.4□□□□□ -1.22
VARS2-212ENST00000542001 PP632Q6XCG6 107 aa7.37□□□□□ -1.23
VARS2-212ENST00000542001 KRTAP4-1Q9BYQ7 146 aa7.32□□□□□ -1.24
VARS2-212ENST00000542001 RYR2Q92736 4967 aa7.26□□□□□ -1.25
VARS2-212ENST00000542001 PKD1P98161 4303 aa7.22□□□□□ -1.25
VARS2-212ENST00000542001 LPAP08519 4548 aa7.15□□□□□ -1.27
VARS2-212ENST00000542001 HSPG2P98160 4391 aa7.13□□□□□ -1.27
VARS2-212ENST00000542001 HERC2O95714 4834 aa7.11□□□□□ -1.27
VARS2-212ENST00000542001 EPPK1P58107 5090 aaKnown RBP7.02□□□□□ -1.29
VARS2-212ENST00000542001 PRO2289Q9P1D8 64 aa6.92□□□□□ -1.3
VARS2-212ENST00000542001 PKHD1L1Q86WI1 4243 aa6.86□□□□□ -1.31
VARS2-212ENST00000542001 MUC2Q02817 5179 aa6.85□□□□□ -1.31
VARS2-212ENST00000542001 LCE3AQ5TA76 89 aa6.81□□□□□ -1.32
VARS2-212ENST00000542001 ABCA13Q86UQ4 5058 aa6.8□□□□□ -1.32
VARS2-212ENST00000542001 PCLOQ9Y6V0 5065 aa6.78□□□□□ -1.32
VARS2-212ENST00000542001 TNXBP22105 4242 aa6.74□□□□□ -1.33
VARS2-212ENST00000542001 RNF213Q63HN8 5207 aa6.7□□□□□ -1.34
VARS2-212ENST00000542001 KRTAP10-12P60413 245 aa6.7□□□□□ -1.34
VARS2-212ENST00000542001 MT1HP80294 61 aa6.67□□□□□ -1.34
VARS2-212ENST00000542001 HERC1Q15751 4861 aa6.64□□□□□ -1.35
VARS2-212ENST00000542001 MT2AP02795 61 aa6.63□□□□□ -1.35
VARS2-212ENST00000542001 MT1FP04733 61 aa6.63□□□□□ -1.35
VARS2-212ENST00000542001 KRTAP12-3P60328 96 aa6.61□□□□□ -1.35
VARS2-212ENST00000542001 FAT4Q6V0I7 4981 aa6.61□□□□□ -1.35
VARS2-212ENST00000542001 FSIP2Q5CZC0 6907 aa6.51□□□□□ -1.37
VARS2-212ENST00000542001 BIRC6Q9NR09 4857 aa6.49□□□□□ -1.37
VARS2-212ENST00000542001 SPRR2GQ9BYE4 73 aa6.49□□□□□ -1.37
VARS2-212ENST00000542001 KRTAP19-1Q8IUB9 90 aa6.48□□□□□ -1.37
VARS2-212ENST00000542001 CRCT1Q9UGL9 99 aa6.47□□□□□ -1.37
VARS2-212ENST00000542001 UBR4Q5T4S7 5183 aa6.44□□□□□ -1.38
VARS2-212ENST00000542001 MUC17Q685J3 4493 aa6.38□□□□□ -1.39
VARS2-212ENST00000542001 LCE2CQ5TA81 110 aa6.36□□□□□ -1.39
VARS2-212ENST00000542001 KRTAP19-2Q3LHN2 52 aa6.35□□□□□ -1.39
VARS2-212ENST00000542001 KRTAP23-1A1A580 65 aa6.32□□□□□ -1.4
VARS2-212ENST00000542001 INE1O15225 51 aa6.29□□□□□ -1.4
VARS2-212ENST00000542001 FLGP20930 4061 aaPredicted RBP6.26□□□□□ -1.41
VARS2-212ENST00000542001 KRTAP10-7P60409 375 aaPredicted RBP6.25□□□□□ -1.41
VARS2-212ENST00000542001 KRTAP9-8Q9BYQ0 159 aa6.23□□□□□ -1.41
VARS2-212ENST00000542001 HMCN2Q8NDA2 5059 aa6.17□□□□□ -1.42
VARS2-212ENST00000542001 KRTAP19-5Q3LI72 72 aa6.17□□□□□ -1.42
VARS2-212ENST00000542001 MT1BP07438 61 aa6.15□□□□□ -1.42
VARS2-212ENST00000542001 MT1XP80297 61 aa6.15□□□□□ -1.43
VARS2-212ENST00000542001 KRTAP8-1Q8IUC2 63 aa6.13□□□□□ -1.43
VARS2-212ENST00000542001 KRTAP10-5P60370 271 aa6.11□□□□□ -1.43
VARS2-212ENST00000542001 KRTAP4-8A0A0G2JLE6 195 aa6.09□□□□□ -1.43
VARS2-212ENST00000542001 KRTAP4-8Q9BYQ9 185 aa6.09□□□□□ -1.43
VARS2-212ENST00000542001 OBSCNQ5VST9 7968 aa6.08□□□□□ -1.44
VARS2-212ENST00000542001 KRTAP19-8Q3LI54 63 aa6.07□□□□□ -1.44
VARS2-212ENST00000542001 KRTAP9-3Q9BYQ3 159 aa5.97□□□□□ -1.45
VARS2-212ENST00000542001 USH2AO75445 5202 aa5.96□□□□□ -1.45
VARS2-212ENST00000542001 SYNE1Q8NF91 8797 aaKnown RBP5.91□□□□□ -1.46
VARS2-212ENST00000542001 LCE3CQ5T5A8 94 aa5.9□□□□□ -1.46
VARS2-212ENST00000542001 LCE2BO14633 110 aa5.88□□□□□ -1.47
VARS2-212ENST00000542001 SPRR5A0A1B0GTR4 108 aa5.85□□□□□ -1.47
VARS2-212ENST00000542001 KRTAP4-7Q9BYR0 210 aa5.84□□□□□ -1.47
VARS2-212ENST00000542001 KMT2DO14686 5537 aa5.81□□□□□ -1.48
VARS2-212ENST00000542001 DSTQ03001 7570 aaKnown RBP5.77□□□□□ -1.49
VARS2-212ENST00000542001 SPRR2FQ96RM1 72 aa5.74□□□□□ -1.49
VARS2-212ENST00000542001 FCGBPQ9Y6R7 5405 aaPredicted RBP5.67□□□□□ -1.5
VARS2-212ENST00000542001 MT1GP13640 62 aa5.6□□□□□ -1.51
VARS2-212ENST00000542001 KRTAP4-3Q9BYR4 195 aa5.47□□□□□ -1.53
VARS2-212ENST00000542001 LCE3BQ5TA77 95 aa5.44□□□□□ -1.54
VARS2-212ENST00000542001 LOC100996750A0A140TA64 210 aa5.42□□□□□ -1.54
VARS2-212ENST00000542001 MT1LQ93083 61 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms