RNA–Protein interactions for RNA: ENST00000533667.5

CTNND1-236, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 4,990 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-236ENST00000533667 KRTAP3-2Q9BYR7 98 aa3.19□□□□□ -1.9
CTNND1-236ENST00000533667 FRAS1Q86XX4 4008 aa3.18□□□□□ -1.9
CTNND1-236ENST00000533667 MT1HL1P0DM35 61 aa3.18□□□□□ -1.9
CTNND1-236ENST00000533667 KRTAP3-3Q9BYR6 98 aa3.17□□□□□ -1.9
CTNND1-236ENST00000533667 DNAH9Q9NYC9 4486 aa3.15□□□□□ -1.91
CTNND1-236ENST00000533667 HUWE1Q7Z6Z7 4374 aaKnown RBP3.12□□□□□ -1.91
CTNND1-236ENST00000533667 KRTAP10-12P60413 245 aa3.11□□□□□ -1.91
CTNND1-236ENST00000533667 MEGF8Q7Z7M0 2845 aa3.11□□□□□ -1.91
CTNND1-236ENST00000533667 KRTAP10-4P60372 401 aaPredicted RBP3.11□□□□□ -1.91
CTNND1-236ENST00000533667 FBN3Q75N90 2809 aa3.1□□□□□ -1.91
CTNND1-236ENST00000533667 STARD9Q9P2P6 4700 aa3.1□□□□□ -1.91
CTNND1-236ENST00000533667 HYDINQ4G0P3 5121 aa3.08□□□□□ -1.92
CTNND1-236ENST00000533667 DNAH2Q9P225 4427 aa3.07□□□□□ -1.92
CTNND1-236ENST00000533667 PKD1P98161 4303 aa3.06□□□□□ -1.92
CTNND1-236ENST00000533667 DNAH6Q9C0G6 4158 aa3.06□□□□□ -1.92
CTNND1-236ENST00000533667 KMT2AQ03164 3969 aa3.05□□□□□ -1.92
CTNND1-236ENST00000533667 HECTD4Q9Y4D8 3996 aa3.05□□□□□ -1.92
CTNND1-236ENST00000533667 FAT2Q9NYQ8 4349 aa3.04□□□□□ -1.92
CTNND1-236ENST00000533667 KRTAP12-3P60328 96 aa3.04□□□□□ -1.92
CTNND1-236ENST00000533667 VPS13DQ5THJ4 4388 aa3.04□□□□□ -1.92
CTNND1-236ENST00000533667 KMT2CQ8NEZ4 4911 aaKnown RBP3.04□□□□□ -1.92
CTNND1-236ENST00000533667 PLECQ15149 4684 aaKnown RBP3.03□□□□□ -1.92
CTNND1-236ENST00000533667 DNAH10Q8IVF4 4471 aa3.02□□□□□ -1.93
CTNND1-236ENST00000533667 RYR3Q15413 4870 aa3.02□□□□□ -1.93
CTNND1-236ENST00000533667 SACSQ9NZJ4 4579 aa3□□□□□ -1.93
CTNND1-236ENST00000533667 SRRM2Q9UQ35 2752 aaKnown RBP2.99□□□□□ -1.93
CTNND1-236ENST00000533667 DNAH11Q96DT5 4516 aa2.99□□□□□ -1.93
CTNND1-236ENST00000533667 LCE3AQ5TA76 89 aa2.97□□□□□ -1.93
CTNND1-236ENST00000533667 ALMS1Q8TCU4 4167 aa2.96□□□□□ -1.94
CTNND1-236ENST00000533667 PKHD1P08F94 4074 aa2.95□□□□□ -1.94
CTNND1-236ENST00000533667 KRTAP4-5Q9BYR2 181 aa2.94□□□□□ -1.94
CTNND1-236ENST00000533667 RYR2Q92736 4967 aa2.93□□□□□ -1.94
CTNND1-236ENST00000533667 LORP23490 312 aaPredicted RBP2.92□□□□□ -1.94
CTNND1-236ENST00000533667 CRCT1Q9UGL9 99 aa2.92□□□□□ -1.94
CTNND1-236ENST00000533667 DNAH17Q9UFH2 4485 aa2.91□□□□□ -1.94
CTNND1-236ENST00000533667 DNAH5Q8TE73 4624 aa2.9□□□□□ -1.94
CTNND1-236ENST00000533667 DNAH8Q96JB1 4490 aa2.89□□□□□ -1.95
CTNND1-236ENST00000533667 VPS13BQ7Z7G8 4022 aa2.89□□□□□ -1.95
CTNND1-236ENST00000533667 FAT3Q8TDW7 4589 aa2.86□□□□□ -1.95
CTNND1-236ENST00000533667 PKHD1L1Q86WI1 4243 aa2.86□□□□□ -1.95
CTNND1-236ENST00000533667 EPPK1P58107 5090 aaKnown RBP2.84□□□□□ -1.95
CTNND1-236ENST00000533667 KRTAP8-1Q8IUC2 63 aa2.83□□□□□ -1.96
CTNND1-236ENST00000533667 LOC100996750A0A140TA64 210 aa2.82□□□□□ -1.96
CTNND1-236ENST00000533667 KRTAP4-6Q9BYQ5 205 aa2.82□□□□□ -1.96
CTNND1-236ENST00000533667 SPRR2GQ9BYE4 73 aa2.8□□□□□ -1.96
CTNND1-236ENST00000533667 LCE2BO14633 110 aa2.8□□□□□ -1.96
CTNND1-236ENST00000533667 KRTAP10-5P60370 271 aa2.79□□□□□ -1.96
CTNND1-236ENST00000533667 APOBP04114 4563 aaKnown RBP2.78□□□□□ -1.96
CTNND1-236ENST00000533667 KRTAP19-4Q3LI73 84 aa2.78□□□□□ -1.96
CTNND1-236ENST00000533667 DYNC1H1Q14204 4646 aaKnown RBP2.77□□□□□ -1.97
CTNND1-236ENST00000533667 MT1HP80294 61 aa2.76□□□□□ -1.97
CTNND1-236ENST00000533667 KRTAP4-1Q9BYQ7 146 aa2.76□□□□□ -1.97
CTNND1-236ENST00000533667 HSPG2P98160 4391 aa2.75□□□□□ -1.97
CTNND1-236ENST00000533667 LCE2AQ5TA79 106 aaPredicted RBP2.75□□□□□ -1.97
CTNND1-236ENST00000533667 MT2AP02795 61 aa2.74□□□□□ -1.97
CTNND1-236ENST00000533667 LRP1BQ9NZR2 4599 aa2.72□□□□□ -1.97
CTNND1-236ENST00000533667 PCLOQ9Y6V0 5065 aa2.69□□□□□ -1.98
CTNND1-236ENST00000533667 TNXBP22105 4242 aa2.68□□□□□ -1.98
CTNND1-236ENST00000533667 ABCA13Q86UQ4 5058 aa2.68□□□□□ -1.98
CTNND1-236ENST00000533667 SPRR5A0A1B0GTR4 108 aa2.67□□□□□ -1.98
CTNND1-236ENST00000533667 MT1FP04733 61 aa2.67□□□□□ -1.98
CTNND1-236ENST00000533667 LCE3CQ5T5A8 94 aa2.67□□□□□ -1.98
CTNND1-236ENST00000533667 KRTAP19-5Q3LI72 72 aa2.65□□□□□ -1.98
CTNND1-236ENST00000533667 RYR1P21817 5038 aa2.64□□□□□ -1.99
CTNND1-236ENST00000533667 HERC2O95714 4834 aa2.64□□□□□ -1.99
CTNND1-236ENST00000533667 KRTAP10-7P60409 375 aaPredicted RBP2.63□□□□□ -1.99
CTNND1-236ENST00000533667 FAT1Q14517 4588 aa2.61□□□□□ -1.99
CTNND1-236ENST00000533667 KRTAP19-8Q3LI54 63 aa2.6□□□□□ -1.99
CTNND1-236ENST00000533667 MYCBP2O75592 4640 aa2.59□□□□□ -1.99
CTNND1-236ENST00000533667 KIAA1109Q2LD37 5005 aa2.59□□□□□ -2
CTNND1-236ENST00000533667 SPRR2FQ96RM1 72 aa2.58□□□□□ -2
CTNND1-236ENST00000533667 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.57□□□□□ -2
CTNND1-236ENST00000533667 BIRC6Q9NR09 4857 aa2.57□□□□□ -2
CTNND1-236ENST00000533667 LRP1Q07954 4544 aaKnown RBP2.56□□□□□ -2
CTNND1-236ENST00000533667 KRTAP19-1Q8IUB9 90 aa2.54□□□□□ -2
CTNND1-236ENST00000533667 MT3P25713 68 aa2.53□□□□□ -2
CTNND1-236ENST00000533667 HERC1Q15751 4861 aa2.5□□□□□ -2.01
CTNND1-236ENST00000533667 LPAP08519 4548 aa2.49□□□□□ -2.01
CTNND1-236ENST00000533667 MT1XP80297 61 aa2.49□□□□□ -2.01
CTNND1-236ENST00000533667 MT1BP07438 61 aa2.45□□□□□ -2.02
CTNND1-236ENST00000533667 HMCN2Q8NDA2 5059 aa2.45□□□□□ -2.02
CTNND1-236ENST00000533667 KRTAP12-4P60329 112 aa2.43□□□□□ -2.02
CTNND1-236ENST00000533667 SPRR2EP22531 72 aa2.42□□□□□ -2.02
CTNND1-236ENST00000533667 SPRR2BP35325 72 aa2.42□□□□□ -2.02
CTNND1-236ENST00000533667 SPRR2AP35326 72 aa2.42□□□□□ -2.02
CTNND1-236ENST00000533667 LCE2CQ5TA81 110 aa2.42□□□□□ -2.02
CTNND1-236ENST00000533667 MT1GP13640 62 aa2.42□□□□□ -2.02
CTNND1-236ENST00000533667 KRTAP9-8Q9BYQ0 159 aa2.42□□□□□ -2.02
CTNND1-236ENST00000533667 KRTAP9-2Q9BYQ4 174 aa2.42□□□□□ -2.02
CTNND1-236ENST00000533667 KRTAP4-8Q9BYQ9 185 aa2.4□□□□□ -2.03
CTNND1-236ENST00000533667 MUC17Q685J3 4493 aa2.4□□□□□ -2.03
CTNND1-236ENST00000533667 LCE3BQ5TA77 95 aa2.4□□□□□ -2.03
CTNND1-236ENST00000533667 KRTAP4-12Q9BQ66 201 aa2.39□□□□□ -2.03
CTNND1-236ENST00000533667 SPRR2DP22532 72 aa2.38□□□□□ -2.03
CTNND1-236ENST00000533667 KRTAP9-3Q9BYQ3 159 aa2.38□□□□□ -2.03
CTNND1-236ENST00000533667 MUC2Q02817 5179 aa2.37□□□□□ -2.03
CTNND1-236ENST00000533667 FLGP20930 4061 aaPredicted RBP2.37□□□□□ -2.03
CTNND1-236ENST00000533667 KRTAP9-9Q9BYP9 154 aa2.37□□□□□ -2.03
CTNND1-236ENST00000533667 KRTAP9-4Q9BYQ2 154 aa2.37□□□□□ -2.03
CTNND1-236ENST00000533667 LCE3DQ9BYE3 92 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms