RNA–Protein interactions for RNA: ENST00000531709.6

NXF1-211, Transcript of nuclear RNA export factor 1, humanhuman

TSL 1 (best) BASIC

Gene NXF1, Length 4,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-211ENST00000531709 KRTAP10-8P60410 259 aa5.79□□□□□ -1.48
NXF1-211ENST00000531709 PKHD1P08F94 4074 aa5.77□□□□□ -1.49
NXF1-211ENST00000531709 DYNC1H1Q14204 4646 aaKnown RBP5.77□□□□□ -1.49
NXF1-211ENST00000531709 KRTAP13-4Q3LI77 160 aa5.76□□□□□ -1.49
NXF1-211ENST00000531709 KRTAP10-4P60372 401 aaPredicted RBP5.76□□□□□ -1.49
NXF1-211ENST00000531709 LUZP6Q538Z0 58 aa5.75□□□□□ -1.49
NXF1-211ENST00000531709 R4GN34 69 aa5.75□□□□□ -1.49
NXF1-211ENST00000531709 M0QZ58 72 aa5.75□□□□□ -1.49
NXF1-211ENST00000531709 KRTAP10-6P60371 365 aaPredicted RBP5.73□□□□□ -1.49
NXF1-211ENST00000531709 MYCBP2O75592 4640 aa5.73□□□□□ -1.49
NXF1-211ENST00000531709 SEC61BP60468 96 aaKnown RBP5.7□□□□□ -1.5
NXF1-211ENST00000531709 FAT2Q9NYQ8 4349 aa5.69□□□□□ -1.5
NXF1-211ENST00000531709 KRTAP3-3Q9BYR6 98 aa5.69□□□□□ -1.5
NXF1-211ENST00000531709 SACSQ9NZJ4 4579 aa5.69□□□□□ -1.5
NXF1-211ENST00000531709 KRTAP12-2P59991 146 aa5.67□□□□□ -1.5
NXF1-211ENST00000531709 PKD1P98161 4303 aa5.66□□□□□ -1.5
NXF1-211ENST00000531709 NDUFAF8A1L188 74 aa5.66□□□□□ -1.5
NXF1-211ENST00000531709 TPRXLQ17RH7 258 aa5.65□□□□□ -1.51
NXF1-211ENST00000531709 LRP1Q07954 4544 aaKnown RBP5.64□□□□□ -1.51
NXF1-211ENST00000531709 KRTAP3-2Q9BYR7 98 aa5.63□□□□□ -1.51
NXF1-211ENST00000531709 CAMK2N1Q7Z7J9 78 aa5.61□□□□□ -1.51
NXF1-211ENST00000531709 APOBP04114 4563 aaKnown RBP5.59□□□□□ -1.51
NXF1-211ENST00000531709 KRTAP12-1P59990 96 aa5.57□□□□□ -1.52
NXF1-211ENST00000531709 KMT2CQ8NEZ4 4911 aaKnown RBP5.56□□□□□ -1.52
NXF1-211ENST00000531709 FAT3Q8TDW7 4589 aa5.52□□□□□ -1.53
NXF1-211ENST00000531709 MT1HL1P0DM35 61 aa5.5□□□□□ -1.53
NXF1-211ENST00000531709 RYR3Q15413 4870 aa5.46□□□□□ -1.54
NXF1-211ENST00000531709 KIAA1109Q2LD37 5005 aa5.45□□□□□ -1.54
NXF1-211ENST00000531709 RYR2Q92736 4967 aa5.44□□□□□ -1.54
NXF1-211ENST00000531709 M0R2T5 61 aa5.43□□□□□ -1.54
NXF1-211ENST00000531709 HSPG2P98160 4391 aa5.42□□□□□ -1.54
NXF1-211ENST00000531709 RYR1P21817 5038 aa5.41□□□□□ -1.54
NXF1-211ENST00000531709 LRP2P98164 4655 aa5.37□□□□□ -1.55
NXF1-211ENST00000531709 PLAC4Q8WY50 150 aa5.35□□□□□ -1.55
NXF1-211ENST00000531709 KRTAP17-1Q9BYP8 105 aa5.35□□□□□ -1.55
NXF1-211ENST00000531709 KRTAP4-5Q9BYR2 181 aa5.34□□□□□ -1.55
NXF1-211ENST00000531709 PKHD1L1Q86WI1 4243 aa5.34□□□□□ -1.56
NXF1-211ENST00000531709 KRTAP15-1Q3LI76 137 aa5.31□□□□□ -1.56
NXF1-211ENST00000531709 LORP23490 312 aaPredicted RBP5.29□□□□□ -1.56
NXF1-211ENST00000531709 TNXBP22105 4242 aa5.25□□□□□ -1.57
NXF1-211ENST00000531709 EPPK1P58107 5090 aaKnown RBP5.24□□□□□ -1.57
NXF1-211ENST00000531709 LPAP08519 4548 aa5.23□□□□□ -1.57
NXF1-211ENST00000531709 TNP1P09430 55 aa5.21□□□□□ -1.58
NXF1-211ENST00000531709 PP632Q6XCG6 107 aa5.18□□□□□ -1.58
NXF1-211ENST00000531709 KRTAP4-1Q9BYQ7 146 aa5.16□□□□□ -1.58
NXF1-211ENST00000531709 ABCA13Q86UQ4 5058 aa5.06□□□□□ -1.6
NXF1-211ENST00000531709 KRTAP10-10P60014 251 aa4.98□□□□□ -1.61
NXF1-211ENST00000531709 HERC2O95714 4834 aa4.97□□□□□ -1.61
NXF1-211ENST00000531709 MUC2Q02817 5179 aa4.96□□□□□ -1.62
NXF1-211ENST00000531709 PCLOQ9Y6V0 5065 aa4.84□□□□□ -1.63
NXF1-211ENST00000531709 BIRC6Q9NR09 4857 aa4.81□□□□□ -1.64
NXF1-211ENST00000531709 MUC17Q685J3 4493 aa4.77□□□□□ -1.65
NXF1-211ENST00000531709 KRTAP19-2Q3LHN2 52 aa4.76□□□□□ -1.65
NXF1-211ENST00000531709 LCE3AQ5TA76 89 aa4.74□□□□□ -1.65
NXF1-211ENST00000531709 FAT4Q6V0I7 4981 aa4.74□□□□□ -1.65
NXF1-211ENST00000531709 HERC1Q15751 4861 aa4.7□□□□□ -1.66
NXF1-211ENST00000531709 KRTAP23-1A1A580 65 aa4.68□□□□□ -1.66
NXF1-211ENST00000531709 LCE2DQ5TA82 110 aaPredicted RBP4.67□□□□□ -1.66
NXF1-211ENST00000531709 FLGP20930 4061 aaPredicted RBP4.67□□□□□ -1.66
NXF1-211ENST00000531709 SPRR2GQ9BYE4 73 aa4.65□□□□□ -1.66
NXF1-211ENST00000531709 PRO2289Q9P1D8 64 aa4.64□□□□□ -1.67
NXF1-211ENST00000531709 RNF213Q63HN8 5207 aa4.64□□□□□ -1.67
NXF1-211ENST00000531709 KRTAP19-1Q8IUB9 90 aa4.64□□□□□ -1.67
NXF1-211ENST00000531709 MT1HP80294 61 aa4.63□□□□□ -1.67
NXF1-211ENST00000531709 MT1FP04733 61 aa4.61□□□□□ -1.67
NXF1-211ENST00000531709 MT2AP02795 61 aa4.6□□□□□ -1.67
NXF1-211ENST00000531709 KRTAP10-12P60413 245 aa4.58□□□□□ -1.68
NXF1-211ENST00000531709 LCE2CQ5TA81 110 aa4.58□□□□□ -1.68
NXF1-211ENST00000531709 KRTAP12-3P60328 96 aa4.56□□□□□ -1.68
NXF1-211ENST00000531709 HMCN2Q8NDA2 5059 aa4.53□□□□□ -1.68
NXF1-211ENST00000531709 UBR4Q5T4S7 5183 aa4.49□□□□□ -1.69
NXF1-211ENST00000531709 SPRR5A0A1B0GTR4 108 aa4.46□□□□□ -1.69
NXF1-211ENST00000531709 KRTAP9-8Q9BYQ0 159 aa4.44□□□□□ -1.7
NXF1-211ENST00000531709 KRTAP8-1Q8IUC2 63 aa4.43□□□□□ -1.7
NXF1-211ENST00000531709 KRTAP10-7P60409 375 aaPredicted RBP4.39□□□□□ -1.71
NXF1-211ENST00000531709 MT1XP80297 61 aa4.39□□□□□ -1.71
NXF1-211ENST00000531709 KRTAP10-5P60370 271 aa4.39□□□□□ -1.71
NXF1-211ENST00000531709 MT1BP07438 61 aa4.38□□□□□ -1.71
NXF1-211ENST00000531709 INE1O15225 51 aa4.38□□□□□ -1.71
NXF1-211ENST00000531709 KRTAP19-8Q3LI54 63 aa4.37□□□□□ -1.71
NXF1-211ENST00000531709 KRTAP19-5Q3LI72 72 aa4.28□□□□□ -1.72
NXF1-211ENST00000531709 KRTAP9-3Q9BYQ3 159 aa4.24□□□□□ -1.73
NXF1-211ENST00000531709 USH2AO75445 5202 aa4.19□□□□□ -1.74
NXF1-211ENST00000531709 LCE2BO14633 110 aa4.19□□□□□ -1.74
NXF1-211ENST00000531709 KRTAP4-8A0A0G2JLE6 195 aa4.19□□□□□ -1.74
NXF1-211ENST00000531709 LCE3CQ5T5A8 94 aa4.19□□□□□ -1.74
NXF1-211ENST00000531709 KRTAP4-8Q9BYQ9 185 aa4.19□□□□□ -1.74
NXF1-211ENST00000531709 FSIP2Q5CZC0 6907 aa4.15□□□□□ -1.74
NXF1-211ENST00000531709 KMT2DO14686 5537 aa4.15□□□□□ -1.74
NXF1-211ENST00000531709 LCE2AQ5TA79 106 aaPredicted RBP4.14□□□□□ -1.75
NXF1-211ENST00000531709 CRCT1Q9UGL9 99 aa4.09□□□□□ -1.75
NXF1-211ENST00000531709 KRTAP4-7Q9BYR0 210 aa4.05□□□□□ -1.76
NXF1-211ENST00000531709 KRTAP9-6A8MVA2 160 aa3.89□□□□□ -1.79
NXF1-211ENST00000531709 KRTAP19-7Q3SYF9 63 aa3.86□□□□□ -1.79
NXF1-211ENST00000531709 MT1LQ93083 61 aa3.84□□□□□ -1.8
NXF1-211ENST00000531709 DSTQ03001 7570 aaKnown RBP3.83□□□□□ -1.8
NXF1-211ENST00000531709 MT1EP04732 61 aa3.81□□□□□ -1.8
NXF1-211ENST00000531709 MT1GP13640 62 aa3.81□□□□□ -1.8
NXF1-211ENST00000531709 KRTAP9-2Q9BYQ4 174 aa3.79□□□□□ -1.8
NXF1-211ENST00000531709 SYNE1Q8NF91 8797 aaKnown RBP3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms