RNA–Protein interactions for RNA: ENST00000527299.1

CLNS1A-209, Transcript of chloride nucleotide-sensitive channel 1A, humanhuman

TSL 2

Gene CLNS1A, Length 387 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLNS1A-209ENST00000527299 SETD2Q9BYW2 2564 aaPredicted RBP1.81□□□□□ -2.12
CLNS1A-209ENST00000527299 ITPR3Q14573 2671 aa1.81□□□□□ -2.12
CLNS1A-209ENST00000527299 KRTAP13-4Q3LI77 160 aa1.81□□□□□ -2.12
CLNS1A-209ENST00000527299 APLNQ9ULZ1 77 aa1.81□□□□□ -2.12
CLNS1A-209ENST00000527299 JMJD1CQ15652 2540 aa1.81□□□□□ -2.12
CLNS1A-209ENST00000527299 DNAH1Q9P2D7 4330 aa1.81□□□□□ -2.12
CLNS1A-209ENST00000527299 A0A0D9SG42 100 aa1.8□□□□□ -2.12
CLNS1A-209ENST00000527299 DNHD1Q96M86 4753 aa1.8□□□□□ -2.12
CLNS1A-209ENST00000527299 CENPEQ02224 2701 aa1.8□□□□□ -2.12
CLNS1A-209ENST00000527299 VWFP04275 2813 aa1.8□□□□□ -2.12
CLNS1A-209ENST00000527299 ITPR2Q14571 2701 aa1.79□□□□□ -2.12
CLNS1A-209ENST00000527299 FBN1P35555 2871 aaKnown RBP1.79□□□□□ -2.12
CLNS1A-209ENST00000527299 SPRR5A0A1B0GTR4 108 aa1.79□□□□□ -2.12
CLNS1A-209ENST00000527299 KRTAP12-1P59990 96 aa1.79□□□□□ -2.12
CLNS1A-209ENST00000527299 NIPBLQ6KC79 2804 aaeCLIP1.78□□□□□ -2.123e-6■□□□□ 9.5
CLNS1A-209ENST00000527299 PDZD2O15018 2839 aa1.77□□□□□ -2.13
CLNS1A-209ENST00000527299 MEGF8Q7Z7M0 2845 aa1.77□□□□□ -2.13
CLNS1A-209ENST00000527299 ADGRG4Q8IZF6 3080 aa1.77□□□□□ -2.13
CLNS1A-209ENST00000527299 SMR3AQ99954 134 aa1.77□□□□□ -2.13
CLNS1A-209ENST00000527299 HIVEP1P15822 2718 aa1.77□□□□□ -2.13
CLNS1A-209ENST00000527299 MTORP42345 2549 aa1.77□□□□□ -2.13
CLNS1A-209ENST00000527299 COL6A5A8TX70 2615 aa1.76□□□□□ -2.13
CLNS1A-209ENST00000527299 KRTAP21-2Q3LI59 83 aa1.76□□□□□ -2.13
CLNS1A-209ENST00000527299 SRRM2Q9UQ35 2752 aaKnown RBP1.76□□□□□ -2.13
CLNS1A-209ENST00000527299 NBEAL1Q6ZS30 2694 aa1.75□□□□□ -2.13
CLNS1A-209ENST00000527299 BSNQ9UPA5 3926 aa1.75□□□□□ -2.13
CLNS1A-209ENST00000527299 CSMD2Q7Z408 3487 aa1.75□□□□□ -2.13
CLNS1A-209ENST00000527299 DNAH11Q96DT5 4516 aa1.74□□□□□ -2.13
CLNS1A-209ENST00000527299 M0QZ58 72 aa1.73□□□□□ -2.13
CLNS1A-209ENST00000527299 FRAS1Q86XX4 4008 aa1.73□□□□□ -2.13
CLNS1A-209ENST00000527299 DNAH8Q96JB1 4490 aa1.73□□□□□ -2.13
CLNS1A-209ENST00000527299 ANK3Q12955 4377 aaKnown RBP1.72□□□□□ -2.13
CLNS1A-209ENST00000527299 NBEAL2Q6ZNJ1 2754 aa1.71□□□□□ -2.14
CLNS1A-209ENST00000527299 STAB1Q9NY15 2570 aa1.71□□□□□ -2.14
CLNS1A-209ENST00000527299 TRRAPQ9Y4A5 3859 aa1.7□□□□□ -2.14
CLNS1A-209ENST00000527299 DMBT1Q9UGM3 2413 aaPredicted RBP1.7□□□□□ -2.14
CLNS1A-209ENST00000527299 DYNC2H1Q8NCM8 4307 aaKnown RBP1.68□□□□□ -2.14
CLNS1A-209ENST00000527299 KRTAP10-10P60014 251 aa1.68□□□□□ -2.14
CLNS1A-209ENST00000527299 ATRQ13535 2644 aa1.68□□□□□ -2.14
CLNS1A-209ENST00000527299 DNAH17Q9UFH2 4485 aa1.67□□□□□ -2.14
CLNS1A-209ENST00000527299 RPS29P62273 56 aaKnown RBP1.67□□□□□ -2.14
CLNS1A-209ENST00000527299 KRTAP13-2Q52LG2 175 aa1.67□□□□□ -2.14
CLNS1A-209ENST00000527299 Q5VSD8 79 aa1.67□□□□□ -2.14
CLNS1A-209ENST00000527299 VPS13CQ709C8 3753 aa1.67□□□□□ -2.14
CLNS1A-209ENST00000527299 DNAH10Q8IVF4 4471 aa1.67□□□□□ -2.14
CLNS1A-209ENST00000527299 TGP01266 2768 aa1.66□□□□□ -2.14
CLNS1A-209ENST00000527299 DNAH2Q9P225 4427 aa1.66□□□□□ -2.14
CLNS1A-209ENST00000527299 ACANP16112 2415 aa1.66□□□□□ -2.14
CLNS1A-209ENST00000527299 SVEP1Q4LDE5 3571 aa1.65□□□□□ -2.14
CLNS1A-209ENST00000527299 ZNF469Q96JG9 3925 aaPredicted RBP1.65□□□□□ -2.14
CLNS1A-209ENST00000527299 MXRA5Q9NR99 2828 aa1.65□□□□□ -2.14
CLNS1A-209ENST00000527299 MYCBP2O75592 4640 aa1.65□□□□□ -2.15
CLNS1A-209ENST00000527299 DNAH9Q9NYC9 4486 aa1.65□□□□□ -2.15
CLNS1A-209ENST00000527299 ANK2Q01484 3957 aa1.65□□□□□ -2.15
CLNS1A-209ENST00000527299 DNAH6Q9C0G6 4158 aa1.64□□□□□ -2.15
CLNS1A-209ENST00000527299 CMYA5Q8N3K9 4069 aa1.64□□□□□ -2.15
CLNS1A-209ENST00000527299 PRKDCP78527 4128 aaKnown RBP1.63□□□□□ -2.15
CLNS1A-209ENST00000527299 PKD1L1Q8TDX9 2849 aa1.63□□□□□ -2.15
CLNS1A-209ENST00000527299 CSMD3Q7Z407 3707 aa1.63□□□□□ -2.15
CLNS1A-209ENST00000527299 LYSTQ99698 3801 aa1.63□□□□□ -2.15
CLNS1A-209ENST00000527299 HUWE1Q7Z6Z7 4374 aaKnown RBP1.62□□□□□ -2.15
CLNS1A-209ENST00000527299 FLNAP21333 2647 aaKnown RBP1.62□□□□□ -2.15
CLNS1A-209ENST00000527299 COL7A1Q02388 2944 aa1.62□□□□□ -2.15
CLNS1A-209ENST00000527299 NSD1Q96L73 2696 aaPredicted RBP1.62□□□□□ -2.15
CLNS1A-209ENST00000527299 CUBNO60494 3623 aa1.61□□□□□ -2.15
CLNS1A-209ENST00000527299 DNAH3Q8TD57 4116 aa1.61□□□□□ -2.15
CLNS1A-209ENST00000527299 NOTCH1P46531 2555 aa1.61□□□□□ -2.15
CLNS1A-209ENST00000527299 DNAH7Q8WXX0 4024 aa1.61□□□□□ -2.15
CLNS1A-209ENST00000527299 STAB2Q8WWQ8 2551 aa1.6□□□□□ -2.15
CLNS1A-209ENST00000527299 MGAM2Q2M2H8 2515 aa1.59□□□□□ -2.15
CLNS1A-209ENST00000527299 ZANQ9Y493 2812 aa1.58□□□□□ -2.16
CLNS1A-209ENST00000527299 SACSQ9NZJ4 4579 aa1.57□□□□□ -2.16
CLNS1A-209ENST00000527299 RYR3Q15413 4870 aa1.57□□□□□ -2.16
CLNS1A-209ENST00000527299 KMT2CQ8NEZ4 4911 aaKnown RBP1.56□□□□□ -2.16
CLNS1A-209ENST00000527299 TENM1Q9UKZ4 2725 aa1.56□□□□□ -2.16
CLNS1A-209ENST00000527299 APOBP04114 4563 aaKnown RBP1.56□□□□□ -2.16
CLNS1A-209ENST00000527299 C9orf92A6NGG3 77 aa1.55□□□□□ -2.16
CLNS1A-209ENST00000527299 TENM3Q9P273 2699 aa1.54□□□□□ -2.16
CLNS1A-209ENST00000527299 HECTD4Q9Y4D8 3996 aa1.53□□□□□ -2.16
CLNS1A-209ENST00000527299 TNP1P09430 55 aa1.53□□□□□ -2.16
CLNS1A-209ENST00000527299 PKD1P98161 4303 aa1.53□□□□□ -2.16
CLNS1A-209ENST00000527299 BIRC6Q9NR09 4857 aa1.52□□□□□ -2.17
CLNS1A-209ENST00000527299 EPPK1P58107 5090 aaKnown RBP1.52□□□□□ -2.17
CLNS1A-209ENST00000527299 DNAH5Q8TE73 4624 aa1.49□□□□□ -2.17
CLNS1A-209ENST00000527299 HSPG2P98160 4391 aa1.49□□□□□ -2.17
CLNS1A-209ENST00000527299 PKHD1L1Q86WI1 4243 aa1.49□□□□□ -2.17
CLNS1A-209ENST00000527299 FLGP20930 4061 aaPredicted RBP1.49□□□□□ -2.17
CLNS1A-209ENST00000527299 KMT2AQ03164 3969 aa1.49□□□□□ -2.17
CLNS1A-209ENST00000527299 LRP1Q07954 4544 aaKnown RBP1.48□□□□□ -2.17
CLNS1A-209ENST00000527299 FAT3Q8TDW7 4589 aa1.48□□□□□ -2.17
CLNS1A-209ENST00000527299 HYDINQ4G0P3 5121 aa1.48□□□□□ -2.17
CLNS1A-209ENST00000527299 CRCT1Q9UGL9 99 aa1.48□□□□□ -2.17
CLNS1A-209ENST00000527299 DYNC1H1Q14204 4646 aaKnown RBP1.46□□□□□ -2.18
CLNS1A-209ENST00000527299 RYR2Q92736 4967 aa1.46□□□□□ -2.18
CLNS1A-209ENST00000527299 PCLOQ9Y6V0 5065 aa1.46□□□□□ -2.18
CLNS1A-209ENST00000527299 FAT2Q9NYQ8 4349 aa1.46□□□□□ -2.18
CLNS1A-209ENST00000527299 VPS13BQ7Z7G8 4022 aa1.45□□□□□ -2.18
CLNS1A-209ENST00000527299 HERC2O95714 4834 aa1.45□□□□□ -2.18
CLNS1A-209ENST00000527299 KRTAP4-1Q9BYQ7 146 aa1.45□□□□□ -2.18
CLNS1A-209ENST00000527299 RYR1P21817 5038 aa1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms